prot_S-firma_M_contig943.20410.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig943.20410.1
Unique Nameprot_S-firma_M_contig943.20410.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length265
Homology
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BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 3.400e-90
Identity = 154/235 (65.53%), Postives = 166/235 (70.64%), Query Frame = 0 
Query:   40 MCTAGKVGRYGSSLPVPVPDPSEVFQTRRGGATDPHTRLPGYTCSTMLGVTQVWFAAHHVGHVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAERRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAXXXXXXXXXXXXXXXSGLTRRSSRTWSLPPLTAG----GGSQGLLGVSSGGGRAPCHGGEV------RRRMSVHLDEAAILSRIYEFL 264
            M  AG  GR        VPDPSEVFQTRRGGA DPHTRLPGYTCSTMLGVTQVWF AHHVGHV+KTLRSGRLD+LHRRMKRNPHVLDARVCRAV+WWSIL EAMEAAK+AERRRA  RE RRLVV LAVSQRR + G+                        SG++R SSRTWSLPPLT      GG +     S GGGRAPCHGG V      R   +VHLDEAAIL++IYEFL
Sbjct:    1 MRQAGSAGR--------VPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGT------RRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.440e-67
Identity = 128/217 (58.99%), Postives = 141/217 (64.98%), Query Frame = 0 
Query:   73 DPHTRLPGYTCSTMLGVTQV---------------WFAAHHVGHVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAERRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAXXXXXXXXXXXXXXXSGLTRRSSRTWSLPPLTAGG---GSQGLLGVSSGGG-RAPCHGGEV------RRRMSVHLDEAAILSRIYEFL 264
            DPHTRLPGYTCSTMLGVTQV               WF AHHVGHV+KTLRSGRLD+LHRRMKRNPHVLDARVCRAV+WWSIL EAMEAAK+         E RRLVV LAVSQRR + G+                        SG++R SSRTWSLPPLT      G +   GVSSGGG RAPCHGG V      R   +VHLDEAAIL+++YEFL
Sbjct:    2 DPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGT-----RRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGWRAPCHGGAVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI3.400e-9065.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE1.440e-6758.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.771

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig943contigS-firma_M_contig943:4103..7140 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig943.20410.1mRNA_S-firma_M_contig943.20410.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig943 4103..7140 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig943.20410.1 ID=prot_S-firma_M_contig943.20410.1|Name=mRNA_S-firma_M_contig943.20410.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=265bp
PIGRGVGVTHKIPALFVLLCVHLRACVSAATASVQPVKAMCTAGKVGRYG
SSLPVPVPDPSEVFQTRRGGATDPHTRLPGYTCSTMLGVTQVWFAAHHVG
HVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAE
RRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAQQRGNGHSSSSGRP
SSGLTRRSSRTWSLPPLTAGGGSQGLLGVSSGGGRAPCHGGEVRRRMSVH
LDEAAILSRIYEFL*
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