mRNA_S-firma_M_contig943.20410.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig943.20410.1
Unique NamemRNA_S-firma_M_contig943.20410.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 3.400e-90
Identity = 154/235 (65.53%), Postives = 166/235 (70.64%), Query Frame = 1 
Query:  118 MCTAGKVGRYGSSLPVPVPDPSEVFQTRRGGATDPHTRLPGYTCSTMLGVTQVWFAAHHVGHVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAERRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAXXXXXXXXXXXXXXXSGLTRRSSRTWSLPPLTAG----GGSQGLLGVSSGGGRAPCHGGEV------RRRMSVHLDEAAILSRIYEFL 792
            M  AG  GR        VPDPSEVFQTRRGGA DPHTRLPGYTCSTMLGVTQVWF AHHVGHV+KTLRSGRLD+LHRRMKRNPHVLDARVCRAV+WWSIL EAMEAAK+AERRRA  RE RRLVV LAVSQRR + G+                        SG++R SSRTWSLPPLT      GG +     S GGGRAPCHGG V      R   +VHLDEAAIL++IYEFL
Sbjct:    1 MRQAGSAGR--------VPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGT------RRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.440e-67
Identity = 128/217 (58.99%), Postives = 141/217 (64.98%), Query Frame = 1 
Query:  217 DPHTRLPGYTCSTMLGVTQV---------------WFAAHHVGHVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAERRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAXXXXXXXXXXXXXXXSGLTRRSSRTWSLPPLTAGG---GSQGLLGVSSGGG-RAPCHGGEV------RRRMSVHLDEAAILSRIYEFL 792
            DPHTRLPGYTCSTMLGVTQV               WF AHHVGHV+KTLRSGRLD+LHRRMKRNPHVLDARVCRAV+WWSIL EAMEAAK+         E RRLVV LAVSQRR + G+                        SG++R SSRTWSLPPLT      G +   GVSSGGG RAPCHGG V      R   +VHLDEAAIL+++YEFL
Sbjct:    2 DPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGT-----RRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGWRAPCHGGAVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig943.20410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI3.400e-9065.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE1.440e-6758.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig943contigS-firma_M_contig943:4103..7140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Exons5
Model size797
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig943.20410.1prot_S-firma_M_contig943.20410.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig943 4103..7140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828776.1307633-CDS-S-firma_M_contig943:4102..43061622828776.1307633-CDS-S-firma_M_contig943:4102..4306Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 4103..4306 -
1697105155.353427-CDS-S-firma_M_contig943:4102..43061697105155.353427-CDS-S-firma_M_contig943:4102..4306Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 4103..4306 -
1622828776.1463535-CDS-S-firma_M_contig943:4345..45891622828776.1463535-CDS-S-firma_M_contig943:4345..4589Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 4346..4589 -
1697105155.3622897-CDS-S-firma_M_contig943:4345..45891697105155.3622897-CDS-S-firma_M_contig943:4345..4589Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 4346..4589 -
1622828776.1591752-CDS-S-firma_M_contig943:5080..51541622828776.1591752-CDS-S-firma_M_contig943:5080..5154Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 5081..5154 -
1697105155.3716118-CDS-S-firma_M_contig943:5080..51541697105155.3716118-CDS-S-firma_M_contig943:5080..5154Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 5081..5154 -
1622828776.1772208-CDS-S-firma_M_contig943:5891..60491622828776.1772208-CDS-S-firma_M_contig943:5891..6049Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 5892..6049 -
1697105155.3810515-CDS-S-firma_M_contig943:5891..60491697105155.3810515-CDS-S-firma_M_contig943:5891..6049Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 5892..6049 -
1622828776.18961-CDS-S-firma_M_contig943:7025..71401622828776.18961-CDS-S-firma_M_contig943:7025..7140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 7026..7140 -
1697105155.390304-CDS-S-firma_M_contig943:7025..71401697105155.390304-CDS-S-firma_M_contig943:7025..7140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig943 7026..7140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig943.20410.1

>prot_S-firma_M_contig943.20410.1 ID=prot_S-firma_M_contig943.20410.1|Name=mRNA_S-firma_M_contig943.20410.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=265bp
PIGRGVGVTHKIPALFVLLCVHLRACVSAATASVQPVKAMCTAGKVGRYG
SSLPVPVPDPSEVFQTRRGGATDPHTRLPGYTCSTMLGVTQVWFAAHHVG
HVMKTLRSGRLDELHRRMKRNPHVLDARVCRAVLWWSILGEAMEAAKQAE
RRRAERRESRRLVVVLAVSQRRGNSGSCGCDKPSAAQQRGNGHSSSSGRP
SSGLTRRSSRTWSLPPLTAGGGSQGLLGVSSGGGRAPCHGGEVRRRMSVH
LDEAAILSRIYEFL*
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mRNA from alignment at S-firma_M_contig943:4103..7140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig943.20410.1 ID=mRNA_S-firma_M_contig943.20410.1|Name=mRNA_S-firma_M_contig943.20410.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3038bp|location=Sequence derived from alignment at S-firma_M_contig943:4103..7140- (Sphaerotrichia firma Sfir_13m male)
CCGATTGGACGGGGCGTGGGTGTGACACATAAAATACCCGCTCTCTTCGT
CCTGCTTTGTGTTCATCTGCGCGCGTGCGTCTCCGCGGCCACCGCCAGCG
TGCAGCCTGTCAAAGGTGAGTTGAAAGCTTTCTTCTCAGTGTGGGGCATG
CGTCATCAAGGAGACGATCGGCTGTGGGATTCAAAGTTGACCTTCGCTCC
CGATTCAATTTCCAGCCAAAGCTTCATCCAGATTGTGTCACGTTTGCTTT
GCAAAACTCACACCCTCCTAACCCCAACCAAGACGAAAGAGTGCACAGCT
GATGATCACGTATGCTGGAGCCAATAGCGCTTCGTGTTGTTGTCTAGTAG
CGTAGGGGAAGAAAAGGAAGAGGGACAACAGCAGCAGCAGCGACGCGGGC
GTGTGTGTGTGTGCGATTTTTGAATGTGGTGCGCCGATCTTACAAAACGC
GGACGCGTTTCGGTCTTCCTTTTTCGGGGCTGTACCTCCGCGTCATGCCC
GCACAGGGCACCGAAACACAACCACGACTCTACCGAGTACCAGGTTGGAG
GTTCCTGTTGCTCTTTGGCGGGTGTCGGTGCTAGTTTCGTGGGGCTTGTT
GCTCTGAATCGAGAGCGGTGTTGGTAGGGTCGTCCGTATGAGCGTCCAGC
ACCTCAAGACTGCCCGCATACAAACGCGGCGCACGCCCTCCGCGCGGGAT
CTCGGATGTGACGTATTCCGCCCCTGCTCTTCGGGTTATGTACGGCGATG
CCTATCACGCCGTGCTTTCACTGAGCTCGCTCTGCGTTTGAATGCGCTGC
CGAAGTCAGAAACCATTCTGGAAAGATCTGCGGCACCACACACGTGAAAA
AAAAAAATCGGCAGAGACTAGTCTACGTCTACAGCGCTCTTTGTGGGCAG
GTTCGAGTTGTTGGTGCCCGAGAACACACAGCCCCCAGGCAGCGTGGACT
ACATCATTAAAACTGCTGCCCCCGTTCCCCGAGGAGAGGGGATTTCCCGC
GTGTTTGCGTTCCTCATAATGTTTCAGCTTACTCATGTTGATATCTGCTT
CGTTTCTCTCCCGTCCTTTCGCTACTGCTGTCCTGAGGTAGCCATGTGCA
CAGCGGGGAAAGTTGGCCGCTATGGATCCTCCCTGCCCGTGCCCGTGCCC
GACCCTAGCGAGGTCTTTCAGACGAGGAGAGGCGGAGCGACGGACCCGCA
CACACGGTTACCGGGGTACACGTGCTCAACAATGCTGGGCGTCACACAGG
TGATTTTGAGAAGTAGCAAGGAGCGGCGAGGACGTTTGGATATCGCATGG
GCTGCTTTGTTCTGTTGGTGTAATTTACAGCAGTGGTCTAGCTGAGCGTG
TGCGATCGCTGGTGCTCCCTCCATGCCCGACGAACTCGCGGTGCCGAGCA
CGGGCACCTCTGACCTCTTACACGCCCTCGAAACATGCTTTGCTGATGTT
TGAGAGGGTGACCCACGCGCACACACAAAAGGTTGGGATGCTGACATCAA
TGGCGGAAATATGGGAAGGTTGAAGTTTTGAAGTTTTGAAACTACAGCAC
AGCTTGTTTCTTTCGTTCAAGGCCTGCATATTTGCACGTACTGTAGTCGT
AGGAGGCCAAAGCACACGCACCAGAGCGCTCCGATACTAAAGTCGACTAG
AGGAATACGACTTAGCAGGTGTAGGTGGTAAAACGCGTTGCGGAAATTCG
ACAGCTACGATCGGGGCTTCCACCGCTGCAGCGCGGACAACTCCAGCTGT
TGTATCTGCATCTCGCAGCAAGCTCGTCGTGCCGCAGATTGTTGACATCC
CTTCGTCAGCGGAATATCGCATACAGCCTGGCTCTTGCACGCCGGAGCTG
TCGCTGCATCGATAGGCTCCTGCCTCCAACAACCCCCAAAGGTGACCAAC
AGCACGGAGTAACCCCGCCGCCACCCCGCCCCCCCCTTGTCGTGCGGCGT
CCCTGCGTTCTGGAATCACCCGGCTGTGCCCCCCAGGTGTGGTTCGCGGC
GCATCATGTCGGCCATGTCATGAAAACGCTGCGCTCGGGTCGACTCGACG
AGCTTCACAGGTACGTGGCAGAGCTTACCACCGCCACTACGTAGCACAAA
CTTATGTGCTGCTGCTGTTGGATGCATGCATGACGCCGTCTGCTTTCACG
CTCTTGTCCAGCGTTGAACCGGGTTGACTGACGCCTCTGGGAAAGGCGGA
AGGCACGGTGACTGCGCGGAGGTGCACAGAGCGTTGGGAAGACGGGTCAG
CTCGGCGGGGTTGATCTCCGCGCGCTCTCTCGGTCTCTGTTGTATCTGCC
TGCCTGTTTGTCTGCCTGTCTCCCGTATAAGAGGCTGTGTGCATCGCTGC
CACTGCTCAACCCCATCTCCTCACCCCCAACCACTGGCACAACGTTGCTA
CCGTGAATGCTCGCTCCTCATGCCCCGTGTCCAGGTCTAACGGATAACCC
TGGTGAACAGCAAATAGCTTCACACGTGTACAGTACGACAAGCACCAATC
AACCAACCCCGCCCACACATACACATGCACAACCCCCGATCGGTCCAACA
GGAGAATGAAGCGGAACCCGCACGTGCTTGACGCCCGAGTGTGCCGGGCC
GTTCTCTGGTGGAGCATTCTCGGGGAGGCGATGGAGGCCGCGAAGCAGGC
GGAGCGGCGGCGGGCGGAGCGGCGCGAGTCCCGCCGCCTGGTTGTCGTTC
TGGCTGTCTCGCAGCGGCGGGGTAATAGCGGCAGCTGTGGATGCGACAAG
CCTTCCGCCGCGCAGCAGCGGGGCAACGGCCACAGCAGTAGTAGCGTCCA
ACCCCAGTCCCAACAACAGCGGCCGGGGGAGGAGGGACGGCCCAGCTCGG
GGCTGACCCGCCGGTCTTCCCGGACGTGGTCATTGCCGCCATTAACGGCA
GGCGGCGGGAGCCAAGGCCTTCTGGGGGTTTCCAGTGGGGGTGGTCGGGC
TCCCTGCCACGGCGGAGAGGTGCGACGGAGGATGAGCGTGCACCTCGACG
AGGCTGCGATCCTCAGCAGGATCTACGAGTTTTTGTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig943:4103..7140-

>mRNA_S-firma_M_contig943.20410.1 ID=mRNA_S-firma_M_contig943.20410.1|Name=mRNA_S-firma_M_contig943.20410.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1590bp|location=Sequence derived from alignment at S-firma_M_contig943:4103..7140- (Sphaerotrichia firma Sfir_13m male)
CCGATTGGACGGGGCGTGGGTGTGACACATAAAATACCCGCTCTCTTCGT
CCTGCTTTGTGTTCATCTGCGCGCGTGCGTCTCCGCGGCCACCGCCAGCG
TGCAGCCTGTCAAAGCCGATTGGACGGGGCGTGGGTGTGACACATAAAAT
ACCCGCTCTCTTCGTCCTGCTTTGTGTTCATCTGCGCGCGTGCGTCTCCG
CGGCCACCGCCAGCGTGCAGCCTGTCAAAGCCATGTGCACAGCGGGGAAA
GTTGGCCGCTATGGATCCTCCCTGCCCGTGCCCGTGCCCGACCCTAGCGA
GGTCTTTCAGACGAGGAGAGGCGGAGCGACGGACCCGCACACACGGTTAC
CGGGGTACACGTGCTCAACAATGCTGGGCGTCACACAGCCATGTGCACAG
CGGGGAAAGTTGGCCGCTATGGATCCTCCCTGCCCGTGCCCGTGCCCGAC
CCTAGCGAGGTCTTTCAGACGAGGAGAGGCGGAGCGACGGACCCGCACAC
ACGGTTACCGGGGTACACGTGCTCAACAATGCTGGGCGTCACACAGGTGT
GGTTCGCGGCGCATCATGTCGGCCATGTCATGAAAACGCTGCGCTCGGGT
CGACTCGACGAGCTTCACAGGTGTGGTTCGCGGCGCATCATGTCGGCCAT
GTCATGAAAACGCTGCGCTCGGGTCGACTCGACGAGCTTCACAGGAGAAT
GAAGCGGAACCCGCACGTGCTTGACGCCCGAGTGTGCCGGGCCGTTCTCT
GGTGGAGCATTCTCGGGGAGGCGATGGAGGCCGCGAAGCAGGCGGAGCGG
CGGCGGGCGGAGCGGCGCGAGTCCCGCCGCCTGGTTGTCGTTCTGGCTGT
CTCGCAGCGGCGGGGTAATAGCGGCAGCTGTGGATGCGACAAGCCTTCCG
CCGCGCAGCAGCGGGGCAACGGCCACAGCAGTAGTAGCGAGAATGAAGCG
GAACCCGCACGTGCTTGACGCCCGAGTGTGCCGGGCCGTTCTCTGGTGGA
GCATTCTCGGGGAGGCGATGGAGGCCGCGAAGCAGGCGGAGCGGCGGCGG
GCGGAGCGGCGCGAGTCCCGCCGCCTGGTTGTCGTTCTGGCTGTCTCGCA
GCGGCGGGGTAATAGCGGCAGCTGTGGATGCGACAAGCCTTCCGCCGCGC
AGCAGCGGGGCAACGGCCACAGCAGTAGTAGCGGACGGCCCAGCTCGGGG
CTGACCCGCCGGTCTTCCCGGACGTGGTCATTGCCGCCATTAACGGCAGG
CGGCGGGAGCCAAGGCCTTCTGGGGGTTTCCAGTGGGGGTGGTCGGGCTC
CCTGCCACGGCGGAGAGGTGCGACGGAGGATGAGCGTGCACCTCGACGAG
GCTGCGATCCTCAGCAGGATCTACGAGTTTTTGTGAGGACGGCCCAGCTC
GGGGCTGACCCGCCGGTCTTCCCGGACGTGGTCATTGCCGCCATTAACGG
CAGGCGGCGGGAGCCAAGGCCTTCTGGGGGTTTCCAGTGGGGGTGGTCGG
GCTCCCTGCCACGGCGGAGAGGTGCGACGGAGGATGAGCGTGCACCTCGA
CGAGGCTGCGATCCTCAGCAGGATCTACGAGTTTTTGTGA
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