prot_S-firma_M_contig9403.20391.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9403.20391.1
Unique Nameprot_S-firma_M_contig9403.20391.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length74
Homology
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BLAST of mRNA_S-firma_M_contig9403.20391.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.490e-15
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0 
Query:    5 EAEPETNGAAXXXXXXXXXXXXXXXXXXXXXXXXXMSHEEQQKADVEGKIFLGGLTWQTTEEMLKTHFGK 74
            EAE ETNG  XXXXXXXXXXXXXXXXXXXXX    +SHEEQQKADVEGKIFLGGLTWQTTE+MLKTHFGK
Sbjct:   14 EAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGK 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9403.20391.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQT7_ECTSI4.490e-1587.14RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..74
e-value: 2.6E-6
score: 29.5
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 42..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9403contigS-firma_M_contig9403:1591..2319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9403.20391.1mRNA_S-firma_M_contig9403.20391.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9403 1591..2319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9403.20391.1 ID=prot_S-firma_M_contig9403.20391.1|Name=mRNA_S-firma_M_contig9403.20391.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=74bp
MLQTEAEPETNGAAETNGAAAATPAADGEAATEGEKAKEMSHEEQQKADV
EGKIFLGGLTWQTTEEMLKTHFGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf