prot_S-firma_M_contig9394.20373.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9394.20373.1
Unique Nameprot_S-firma_M_contig9394.20373.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length93
Homology
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A6H5K4A6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A6_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.760e-50
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0
Query:    1 MRRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            MRRSL KVVKIRRDRASLPIAA+QD IVRAVAS+PCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA
Sbjct:  387 MRRSLTKVVKIRRDRASLPIAAFQDAIVRAVASNPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 479          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 6.200e-50
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0
Query:    1 MRRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            MRRSLAKVVKIRRDRASLPIAA+Q+ IVRAVAS+PCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA
Sbjct:  352 MRRSLAKVVKIRRDRASLPIAAFQNAIVRAVASNPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 444          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A7S0PS31_MICPS (RNA helicase (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PS31_MICPS)

HSP 1 Score: 133 bits (335), Expect = 2.700e-34
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            RRSLAK+VK+ +D+A LPIAA  D IVR+V  HP  L+AGDTGCGKSTQVPQYLL+AG+ RVACTQPRR++A  L RRVS+ETL+E G E+A
Sbjct:  155 RRSLAKLVKLAKDKAQLPIAAEMDAIVRSVTEHPVTLIAGDTGCGKSTQVPQYLLRAGFNRVACTQPRRVAATALARRVSHETLNEWGGEIA 246          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: UPI001C66DFB4 (probable ATP-dependent RNA helicase DHX34 n=1 Tax=Lagopus leucura TaxID=30410 RepID=UPI001C66DFB4)

HSP 1 Score: 125 bits (315), Expect = 2.760e-34
Identity = 59/90 (65.56%), Postives = 77/90 (85.56%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSE 91
            ++S +K+ KIRRDRA+LPIA +++ I+RAVA H  VLVAGDTGCGKSTQVPQ+LL+AGY  VACTQPRRI+ + L +RV+YE+L +HGS+
Sbjct:  128 KQSFSKLAKIRRDRAALPIARFREPILRAVARHRVVLVAGDTGCGKSTQVPQFLLEAGYQNVACTQPRRIACIALAKRVAYESLQQHGSQ 217          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A7S0IG38_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IG38_MICPS)

HSP 1 Score: 131 bits (330), Expect = 1.250e-33
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            RRSLAK+VK+ +D++ LPIAA  D IVR+V  HP  L+AGDTGCGKSTQVPQYLL+AG+ RVACTQPRR++A  L RRVS+ETL+E G E+A
Sbjct:  154 RRSLAKLVKLAKDKSKLPIAAEMDAIVRSVREHPVTLIAGDTGCGKSTQVPQYLLRAGFDRVACTQPRRVAATALARRVSHETLNEWGGEIA 245          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A8C9FRU8_PAVCR (Uncharacterized protein n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9FRU8_PAVCR)

HSP 1 Score: 120 bits (301), Expect = 1.860e-33
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    4 SLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEH 88
            S +K+ KIRRDRA+LPIA ++  I+RAVA H  VLVAGDTGCGKSTQVPQ+LL+AGY  VACTQPRRI+ + L +RV+YE+L +H
Sbjct:   28 SFSKLAKIRRDRAALPIARFRQAILRAVARHRVVLVAGDTGCGKSTQVPQFLLEAGYRNVACTQPRRIACVALAKRVAYESLQQH 112          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A226MC08_CALSU (Uncharacterized protein (Fragment) n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226MC08_CALSU)

HSP 1 Score: 122 bits (307), Expect = 4.670e-33
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHG 89
            +RS +K+ KIRRDR++LPIA Y++ I+ AVA H  V+VAGDTGCGKSTQVPQ+LL+AGYG +ACTQPRRI+ + L +RV+YE+L +HG
Sbjct:  130 KRSFSKLAKIRRDRSALPIARYREAILSAVARHRVVVVAGDTGCGKSTQVPQFLLEAGYGGLACTQPRRIACIALAKRVAYESLGQHG 217          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: A0A8J9WKD3_9CHLO (Probable ATP-dependent RNA helicase DHX34 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKD3_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 2.870e-32
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            +R L K+ K+ +D+A+LPIAAY+  IV AV ++P V+VAGDTGCGKSTQ+PQ+LL++GY  VACTQPRRISA+ LCRRV++ETLHEH  ++A
Sbjct:  135 KRQLQKLRKLLQDKAALPIAAYETRIVEAVRANPAVVVAGDTGCGKSTQLPQFLLKSGYSHVACTQPRRISAIALCRRVAFETLHEHRDDIA 226          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: C1EBK8_MICCC (RNA helicase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBK8_MICCC)

HSP 1 Score: 127 bits (320), Expect = 2.870e-32
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            RRSLAK+VK+ +D++ LPIAA  D IVR+V  HP  L+AGDTGCGKSTQVPQYLL+AG+ RVA TQPRR++A  L RRVS+ETL+E G E+A
Sbjct:  199 RRSLAKLVKLAKDKSKLPIAAEMDAIVRSVTEHPVTLIAGDTGCGKSTQVPQYLLRAGFRRVALTQPRRVAATALARRVSHETLNEWGGEIA 290          
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Match: UPI000B3DA88B (probable ATP-dependent RNA helicase DHX34 n=1 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3DA88B)

HSP 1 Score: 127 bits (319), Expect = 3.830e-32
Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    2 RRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQVPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA 93
            ++S AK+ KIRRDRA+LPIA +++ I+RAVA H  VLVAGDTGCGKSTQVPQ+LL+AGY  VACTQPRRI+ + L +RV+YE+L +HG +V+
Sbjct:  154 KQSFAKLAKIRRDRAALPIARFREPILRAVARHRVVLVAGDTGCGKSTQVPQFLLEAGYRNVACTQPRRIACVALAKRVAYESLQQHGDQVS 245          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9394.20373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4A6_9PHAE3.760e-5095.70Helicase ATP-binding domain-containing protein n=1... [more]
D8LEZ4_ECTSI6.200e-5095.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0PS31_MICPS2.700e-3469.57RNA helicase (Fragment) n=1 Tax=Micromonas pusilla... [more]
UPI001C66DFB42.760e-3465.56probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]
A0A7S0IG38_MICPS1.250e-3368.48Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8C9FRU8_PAVCR1.860e-3367.06Uncharacterized protein n=1 Tax=Pavo cristatus Tax... [more]
A0A226MC08_CALSU4.670e-3364.77Uncharacterized protein (Fragment) n=1 Tax=Callipe... [more]
A0A8J9WKD3_9CHLO2.870e-3264.13Probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]
C1EBK8_MICCC2.870e-3267.39RNA helicase n=1 Tax=Micromonas commoda (strain RC... [more]
UPI000B3DA88B3.830e-3265.22probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..93
e-value: 2.1E-29
score: 104.3
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 7..92
NoneNo IPR availablePANTHERPTHR18934:SF148ATP-DEPENDENT RNA HELICASE DHX34-RELATEDcoord: 7..92
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 17..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9394contigS-firma_M_contig9394:2766..3663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9394.20373.1mRNA_S-firma_M_contig9394.20373.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9394 2751..3663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9394.20373.1 ID=prot_S-firma_M_contig9394.20373.1|Name=mRNA_S-firma_M_contig9394.20373.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=93bp
MRRSLAKVVKIRRDRASLPIAAYQDTIVRAVASHPCVLVAGDTGCGKSTQ
VPQYLLQAGYGRVACTQPRRISAMGLCRRVSYETLHEHGSEVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase