prot_S-firma_M_contig9370.20341.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9370.20341.1
Unique Nameprot_S-firma_M_contig9370.20341.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length101
Homology
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BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.590e-24
Identity = 52/101 (51.49%), Postives = 58/101 (57.43%), Query Frame = 0 
Query:    1 FLGLPTGTAEEDNARCIEDNMVAVSNFRT-GALTCADIGATCTTADDCCSDSCXXXXXXXXXXXXXXGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA 100
            +L   TGTA  DNARCIED+MVAVS FR  G   C+D G TCT   DCC   C              GG   T  D VCDP NN++EC YD GDCC CDC+
Sbjct:  377 YLNKSTGTAAADNARCIEDSMVAVSEFRDDGDFVCSDDGDTCTVDSDCCVGFCGSAGICATEQCGGAGGDTATIEDMVCDPENNVDECQYDGGDCCECDCS 477
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BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.620e-24
Identity = 52/101 (51.49%), Postives = 58/101 (57.43%), Query Frame = 0 
Query:    1 FLGLPTGTAEEDNARCIEDNMVAVSNFRT-GALTCADIGATCTTADDCCSDSCXXXXXXXXXXXXXXGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA 100
            +L  PTGTA  DNARCIE++MVAVSNFR  G   C+D G  C    DCC   C              GG   T  D VCDP NN+EEC YD GDCC CDC+
Sbjct:  557 YLNKPTGTATADNARCIEESMVAVSNFRADGDFICSDDGDACAVDIDCCVGFCGSAGICATEECAGLGGDTATIEDMVCDPENNVEECQYDGGDCCECDCS 657
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRC1_9PHAE3.590e-2451.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE3.620e-2451.49LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9370contigS-firma_M_contig9370:1505..3548 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9370.20341.1mRNA_S-firma_M_contig9370.20341.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9370 1505..3548 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9370.20341.1 ID=prot_S-firma_M_contig9370.20341.1|Name=mRNA_S-firma_M_contig9370.20341.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=101bp
FLGLPTGTAEEDNARCIEDNMVAVSNFRTGALTCADIGATCTTADDCCSD
SCGSAGVCAIDVCGGAGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA
E
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