mRNA_S-firma_M_contig9370.20341.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9370.20341.1
Unique NamemRNA_S-firma_M_contig9370.20341.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.590e-24
Identity = 52/101 (51.49%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    1 FLGLPTGTAEEDNARCIEDNMVAVSNFRT-GALTCADIGATCTTADDCCSDSCXXXXXXXXXXXXXXGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA 300
            +L   TGTA  DNARCIED+MVAVS FR  G   C+D G TCT   DCC   C              GG   T  D VCDP NN++EC YD GDCC CDC+
Sbjct:  377 YLNKSTGTAAADNARCIEDSMVAVSEFRDDGDFVCSDDGDTCTVDSDCCVGFCGSAGICATEQCGGAGGDTATIEDMVCDPENNVDECQYDGGDCCECDCS 477
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BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.620e-24
Identity = 52/101 (51.49%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    1 FLGLPTGTAEEDNARCIEDNMVAVSNFRT-GALTCADIGATCTTADDCCSDSCXXXXXXXXXXXXXXGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA 300
            +L  PTGTA  DNARCIE++MVAVSNFR  G   C+D G  C    DCC   C              GG   T  D VCDP NN+EEC YD GDCC CDC+
Sbjct:  557 YLNKPTGTATADNARCIEESMVAVSNFRADGDFICSDDGDACAVDIDCCVGFCGSAGICATEECAGLGGDTATIEDMVCDPENNVEECQYDGGDCCECDCS 657
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9370.20341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRC1_9PHAE3.590e-2451.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE3.620e-2451.49LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9370contigS-firma_M_contig9370:1505..3548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size304
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9370.20341.1prot_S-firma_M_contig9370.20341.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9370 1505..3548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828767.9297264-CDS-S-firma_M_contig9370:1504..15291622828767.9297264-CDS-S-firma_M_contig9370:1504..1529Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 1505..1529 -
1697105150.73943-CDS-S-firma_M_contig9370:1504..15291697105150.73943-CDS-S-firma_M_contig9370:1504..1529Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 1505..1529 -
1622828767.9425952-CDS-S-firma_M_contig9370:1777..18141622828767.9425952-CDS-S-firma_M_contig9370:1777..1814Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 1778..1814 -
1697105150.7478898-CDS-S-firma_M_contig9370:1777..18141697105150.7478898-CDS-S-firma_M_contig9370:1777..1814Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 1778..1814 -
1622828767.9571898-CDS-S-firma_M_contig9370:2111..21771622828767.9571898-CDS-S-firma_M_contig9370:2111..2177Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 2112..2177 -
1697105150.756046-CDS-S-firma_M_contig9370:2111..21771697105150.756046-CDS-S-firma_M_contig9370:2111..2177Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 2112..2177 -
1622828767.9713414-CDS-S-firma_M_contig9370:3228..33401622828767.9713414-CDS-S-firma_M_contig9370:3228..3340Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 3229..3340 -
1697105150.7641916-CDS-S-firma_M_contig9370:3228..33401697105150.7641916-CDS-S-firma_M_contig9370:3228..3340Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 3229..3340 -
1622828767.9833038-CDS-S-firma_M_contig9370:3485..35481622828767.9833038-CDS-S-firma_M_contig9370:3485..3548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 3486..3548 -
1697105150.7720811-CDS-S-firma_M_contig9370:3485..35481697105150.7720811-CDS-S-firma_M_contig9370:3485..3548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9370 3486..3548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9370.20341.1

>prot_S-firma_M_contig9370.20341.1 ID=prot_S-firma_M_contig9370.20341.1|Name=mRNA_S-firma_M_contig9370.20341.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=101bp
FLGLPTGTAEEDNARCIEDNMVAVSNFRTGALTCADIGATCTTADDCCSD
SCGSAGVCAIDVCGGAGGSLLTQGDSVCDPGNNIEECNYDSGDCCICDCA
E
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mRNA from alignment at S-firma_M_contig9370:1505..3548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9370.20341.1 ID=mRNA_S-firma_M_contig9370.20341.1|Name=mRNA_S-firma_M_contig9370.20341.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2044bp|location=Sequence derived from alignment at S-firma_M_contig9370:1505..3548- (Sphaerotrichia firma Sfir_13m male)
TTTTTGGGTTTGCCGACCGGGACTGCCGAGGAAGACAACGCTCGCTGCAT
CGAAGACAACATGGTGAGACTTGCAAAGCTTGAGTGTTGGACTGCTGTGG
CACTGCCGACACTGGCAGCGTTTGGCGAATTGCCGATGGCAGCAGTTACT
CGAGGTGCATCGGCTACAGGAGTAACCGCGCCCGAGCGAAAATTGTTGAA
TATTTCAGGTGGCTGTGTCCAACTTCAGGACGGGCGCGTTGACCTGCGCT
GACATCGGTGCAACATGCACCACGGCAGACGACTGCTGCAGCGACTCCTG
CGGTTCTGCCGGAGTTTGCGGTAAGTTTCTGGTTGAAGTGCTGTTGCGGG
CTTGCTCTAGGTTTGTTTCGACTTCATTCCTCACTGTCGACGAGAGAGAG
AGGTACAGCGACATTGAATTGTGTTTCCCTTGGAAAAATCCCGGGTTCAT
GCTCCACGGATACCCTGAGGGGAAGAGCGGGCGAAGGTATGGGCTGTGTA
CGTGGCACACCAATACCAGGGTCGCAGCGAAAAAACTGGCACCCAACTGC
CGCTCTCCCCACATGGTGTTCGAATGTGCTTCTCTCGTTGTCTGTTGTAT
AAGCAGACACCCGCACGCCATCGAAAACGAGCCAGATTACAAACGAAGGG
CGTTCGAAACCACTGACTGTAACCAAATGTTCAGGCCTATTTCGAAAATA
TCTAGAAAGCGTTCTCGAACGCCAAAATCGCCACCCGACAACGTGCTCTG
TTGCACTCGCCATGTTGATCTCGCGGAATGTGCGACAAAATGGTACCATA
GCACACCTGACGCAATGCCCGTGGAGCGGTGCCTGGGGCGCGGTGCCCGG
GGCTTCACTGAGGGATATTTGATCGCCTGGCCTCATAAATGCGCCTGGTT
GTCCGTTGGTACAAGAAACTTCATTCAGCAAGGCGATCAGGATGCAAACG
GTTTTTGGCATGTGTTTACGGGTGTTTTTTTTGCCCGACCGCGAGTACCC
AAAATCGAGGGCTTGCACCTAGCTGATGAGAACAAAGAAGAGCGCTGCAG
CAGGATAAACACACTATCAAAACGTGGCGCTGTTCTAAACGCTCGCTAGG
GCGAGTGGTAGCGTTGCGTTCACAGCAAAACACTGTTTTCATCCAGACGA
ACGACGGATGTTCGTGTCAAACCTACACCCGCCAGCGGCTGACCTAGGCA
CCGCGACGGCTGTAGCGCGGTGGTCCATCAGCCTGCTGCACTTTCACAAG
GTGTTGGGGAGCGTTTAGGAACCACATGTCGCGCGCGTCATGCCCGGTCG
ACATGGATTGTCGCCTCGGCTTATCCCCCTTGTTATCGCTGCTTGTACCT
CGTCTCTGGCTGGTCGCGCAGCAATCGATGTCTGCGGCGGAGCCGGCGGT
TCCCTCCTGACCCAAGGGGACAGCGTATGCGATCCTGGTATGTTCCGAGC
TGATTGTTATTTCACCTGACAGTGAGAGTCAACTCCCAGAAACTCAATGT
CTCGACGGAAGTTTCTCCGCCTGCCTTTTTCATGCACGCCTGGTAATGCA
CGAACATCACACCAACACAGTTGTGGTACGTGTGGGGCGAGGTCACCCAG
GTAGATACGGCGGAATCGGGGATCCCACGGAGGCCTTGCCAACGAACACA
CACGGGCGCTAGGGAACCTGTCGCTTCTTCCAACCCTGTTTGTCCCCGCC
GTTTCTTTTCAATGTCGTTATACCGCCTCAACAGGAAACAACATTGAGGA
ATGCAACTACGACTCGGGCGAGTGAGTTATCGGCATTCATTTCCTGAGGA
ATGCTTCCCACGTGTAGCGCTCCATCTAAATTTAGCAGCCTCATCGGCTT
TGGGTGACCGTTCAGATCGTCGCAAGGTTGAGCAGCCAGCAGAAGAAGCA
CTGGCATAGCGTTTGCTGTGGGTGGTTAGCTCCATCATCATTGCAGATCT
GTCCCTACCCCGGTGTCTGAAAACCCCCGCCTGTTGCGCGCCTGCTTGTC
TCTCCCGGTGCTTGAAAAGCTGCTGCATTTGTGACTGCGCGGAA
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Coding sequence (CDS) from alignment at S-firma_M_contig9370:1505..3548-

>mRNA_S-firma_M_contig9370.20341.1 ID=mRNA_S-firma_M_contig9370.20341.1|Name=mRNA_S-firma_M_contig9370.20341.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=606bp|location=Sequence derived from alignment at S-firma_M_contig9370:1505..3548- (Sphaerotrichia firma Sfir_13m male)
TTTTTGGGTTTGCCGACCGGGACTGCCGAGGAAGACAACGCTCGCTGCAT
CGAAGACAACATGTTTTTGGGTTTGCCGACCGGGACTGCCGAGGAAGACA
ACGCTCGCTGCATCGAAGACAACATGGTGGCTGTGTCCAACTTCAGGACG
GGCGCGTTGACCTGCGCTGACATCGGTGCAACATGCACCACGGCAGACGA
CTGCTGCAGCGACTCCTGCGGTTCTGCCGGAGTTTGCGGTGGCTGTGTCC
AACTTCAGGACGGGCGCGTTGACCTGCGCTGACATCGGTGCAACATGCAC
CACGGCAGACGACTGCTGCAGCGACTCCTGCGGTTCTGCCGGAGTTTGCG
CAATCGATGTCTGCGGCGGAGCCGGCGGTTCCCTCCTGACCCAAGGGGAC
AGCGTATGCGATCCTGCAATCGATGTCTGCGGCGGAGCCGGCGGTTCCCT
CCTGACCCAAGGGGACAGCGTATGCGATCCTGGAAACAACATTGAGGAAT
GCAACTACGACTCGGGCGAGAAACAACATTGAGGAATGCAACTACGACTC
GGGCGACTGCTGCATTTGTGACTGCGCGGAACTGCTGCATTTGTGACTGC
GCGGAA
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