prot_S-firma_M_contig9327.20287.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9327.20287.1
Unique Nameprot_S-firma_M_contig9327.20287.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length284
Homology
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BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 8.710e-87
Identity = 182/329 (55.32%), Postives = 203/329 (61.70%), Query Frame = 0 
Query:   18 SFRRPRVKVVGGRAFVYDAASAATLLSEHRIWATPVGVRRARNKSAEQNFPCVLSQEQAALVLSRNLADVTY---DSSSE---EGHQTRA-----GACGGIEDQE-----VSTEGI-----RS--SIWQFPETPAEKKSMAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVMVGRGANDELSPAEVSGFARVQQAVGKRSVIATAPRATEVPASPPMGTGAAASAA---AALAAPRNVEAGPTDTGRITAVAPRHQG--------------------AAAAAGAAT------------------NEGVRYVTLQFHSVSGR 282
            S RRP+V VV GR  VYD ASAATLLSEHRIWATPVGVRRARNKS E +FPCVLS EQA LVL R LADV Y    S+SE    GH+T          GG E+QE     ++T+ +     RS  S W+FPET    KS AVFEDLWAKGLC  SGSNY AD+VVYNGPPTERHS+AAV+V RGANDELSPAE+SGFARVQQAVGKR+VIATAP AT   +   +     ASAA   AA+ APR  E  PT     T+   RH+G                    A AAA A                    NEGVRY+TLQFHSVS R
Sbjct:   15 SGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASETGCHGHETLEERHSDDGDGGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSR 343
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BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.070e-12
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 0 
Query:   18 SFRRPRVKVVGGRAFVYDAASAATLLSEHRIWATPVGVRR 57
            S RRPRV VV GR  VYD ASAATLLSEHRIWATPVGVRR
Sbjct:   11 SGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE8.710e-8755.32tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI8.070e-1285.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 133..211
e-value: 2.0E-12
score: 47.0
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 131..215
e-value: 1.2E-13
score: 52.9
NoneNo IPR availablePANTHERPTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDcoord: 22..96
coord: 114..211
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 134..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9327contigS-firma_M_contig9327:1421..3331 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9327.20287.1mRNA_S-firma_M_contig9327.20287.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9327 370..4012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9327.20287.1 ID=prot_S-firma_M_contig9327.20287.1|Name=mRNA_S-firma_M_contig9327.20287.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=284bp
MPSRLADLAQQQGPPGRSFRRPRVKVVGGRAFVYDAASAATLLSEHRIWA
TPVGVRRARNKSAEQNFPCVLSQEQAALVLSRNLADVTYDSSSEEGHQTR
AGACGGIEDQEVSTEGIRSSIWQFPETPAEKKSMAVFEDLWAKGLCAVSG
SNYGADYVVYNGPPTERHSVAAVMVGRGANDELSPAEVSGFARVQQAVGK
RSVIATAPRATEVPASPPMGTGAAASAAAALAAPRNVEAGPTDTGRITAV
APRHQGAAAAAGAATNEGVRYVTLQFHSVSGRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036167tRNA_intron_Endo_cat-like_sf
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like