mRNA_S-firma_M_contig9327.20287.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9327.20287.1
Unique NamemRNA_S-firma_M_contig9327.20287.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.670e-80
Identity = 182/329 (55.32%), Postives = 203/329 (61.70%), Query Frame = 1 
Query:  733 SFRRPRVKVVGGRAFVYDAASAATLLSEHRIWATPVGVRRARNKSAEQNFPCVLSQEQAALVLSRNLADVTY---DSSSE---EGHQTRA-----GACGGIEDQE-----VSTEGI-----RS--SIWQFPETPAEKKSMAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVMVGRGANDELSPAEVSGFARVQQAVGKRSVIATAPRATEVPASPPMGTGAAASAA---AALAAPRNVEAGPTDTGRITAVAPRHQG--------------------AAAAAGAAT------------------NEGVRYVTLQFHSVSGR 1527
            S RRP+V VV GR  VYD ASAATLLSEHRIWATPVGVRRARNKS E +FPCVLS EQA LVL R LADV Y    S+SE    GH+T          GG E+QE     ++T+ +     RS  S W+FPET    KS AVFEDLWAKGLC  SGSNY AD+VVYNGPPTERHS+AAV+V RGANDELSPAE+SGFARVQQAVGKR+VIATAP AT   +   +     ASAA   AA+ APR  E  PT     T+   RH+G                    A AAA A                    NEGVRY+TLQFHSVS R
Sbjct:   15 SGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASETGCHGHETLEERHSDDGDGGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSR 343
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BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.280e-11
Identity = 34/40 (85.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  733 SFRRPRVKVVGGRAFVYDAASAATLLSEHRIWATPVGVRR 852
            S RRPRV VV GR  VYD ASAATLLSEHRIWATPVGVRR
Sbjct:   11 SGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9327.20287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE2.670e-8055.32tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI4.280e-1185.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9327contigS-firma_M_contig9327:370..4012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog4792.ETI45198
Preferred nameTSEN34
KEGG rclassRC00004,RC00041
KEGG koko:K00181,ko:K15323
KEGG ReactionR11201
KEGG Pathwayko04310,map04310
GOsGO:0000213,GO:0000214,GO:0000379,GO:0000394,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348
EggNOG free text desc.tRNA intron endonuclease, catalytic C-terminal domain
EggNOG OGs3QI5E@4776,COG1676@1,KOG4133@2759
EC2.3.1.250,3.1.27.9
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA endonuclease-like domain
Ec32 orthologEc-27_003060.1
Exons4
Model size2584
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9327.20287.1prot_S-firma_M_contig9327.20287.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9327 1421..3331 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828762.8933904-UTR-S-firma_M_contig9327:369..14201622828762.8933904-UTR-S-firma_M_contig9327:369..1420Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9327 370..1420 -
1697105147.6755621-UTR-S-firma_M_contig9327:369..14201697105147.6755621-UTR-S-firma_M_contig9327:369..1420Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9327 370..1420 -
1622828762.9605937-UTR-S-firma_M_contig9327:3331..40121622828762.9605937-UTR-S-firma_M_contig9327:3331..4012Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9327 3332..4012 -
1697105147.729916-UTR-S-firma_M_contig9327:3331..40121697105147.729916-UTR-S-firma_M_contig9327:3331..4012Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9327 3332..4012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828762.9052732-CDS-S-firma_M_contig9327:1420..17881622828762.9052732-CDS-S-firma_M_contig9327:1420..1788Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 1421..1788 -
1697105147.6918676-CDS-S-firma_M_contig9327:1420..17881697105147.6918676-CDS-S-firma_M_contig9327:1420..1788Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 1421..1788 -
1622828762.9208875-CDS-S-firma_M_contig9327:2035..21831622828762.9208875-CDS-S-firma_M_contig9327:2035..2183Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 2036..2183 -
1697105147.7012403-CDS-S-firma_M_contig9327:2035..21831697105147.7012403-CDS-S-firma_M_contig9327:2035..2183Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 2036..2183 -
1622828762.9360716-CDS-S-firma_M_contig9327:2578..27471622828762.9360716-CDS-S-firma_M_contig9327:2578..2747Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 2579..2747 -
1697105147.7107515-CDS-S-firma_M_contig9327:2578..27471697105147.7107515-CDS-S-firma_M_contig9327:2578..2747Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 2579..2747 -
1622828762.947321-CDS-S-firma_M_contig9327:3164..33311622828762.947321-CDS-S-firma_M_contig9327:3164..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 3165..3331 -
1697105147.7201612-CDS-S-firma_M_contig9327:3164..33311697105147.7201612-CDS-S-firma_M_contig9327:3164..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9327 3165..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9327.20287.1

>prot_S-firma_M_contig9327.20287.1 ID=prot_S-firma_M_contig9327.20287.1|Name=mRNA_S-firma_M_contig9327.20287.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=284bp
MPSRLADLAQQQGPPGRSFRRPRVKVVGGRAFVYDAASAATLLSEHRIWA
TPVGVRRARNKSAEQNFPCVLSQEQAALVLSRNLADVTYDSSSEEGHQTR
AGACGGIEDQEVSTEGIRSSIWQFPETPAEKKSMAVFEDLWAKGLCAVSG
SNYGADYVVYNGPPTERHSVAAVMVGRGANDELSPAEVSGFARVQQAVGK
RSVIATAPRATEVPASPPMGTGAAASAAAALAAPRNVEAGPTDTGRITAV
APRHQGAAAAAGAATNEGVRYVTLQFHSVSGRT*
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mRNA from alignment at S-firma_M_contig9327:370..4012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9327.20287.1 ID=mRNA_S-firma_M_contig9327.20287.1|Name=mRNA_S-firma_M_contig9327.20287.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3643bp|location=Sequence derived from alignment at S-firma_M_contig9327:370..4012- (Sphaerotrichia firma Sfir_13m male)
ACAAGGGCCGTGCGAAGCAGGGTGAGAGCGTGGTGGAGTTGAAGATAAAT
AAATGCATACCTGATCGAGCACGAGAGACGAAAGTGAAATGAGAGGGCAA
GTGAAAGAGTACACATTCGCATATTTTTTATTTTCGTCTACGGATACCCC
CGTGTTTACGCGACTGGACGAGGGTCCAGTGCATTTGGTGTAGTAAAACG
CAGATGTATTTTTTCTTTTTTCTACCTGTGTGCTGTTTCTATCCTGGGCA
CAGGTACAATGATAGCATATTGGTGATTTCACGACCCTCCTGCGATACAC
ATGAATGCTGAATGTATTGAGAGGTAACGCACACCGCTGTCCCTACGGGG
TACCTGCTGGGTACTACACTGCTGTGCACCCGACTCGCCTGTCGCACTGC
TGTTCTCAAGTCCGCAGCAGGCACCCTCGCTTTGCGAAGTGCATGTATGT
AGAAGATCATGTAAGTCTGCATACATACATACGGTATTTGTTCTCGGCGT
TCAATCCTCGCCATCAGCAGTGTCTACCAAAGGGTGGTGTAGACACTATT
GCTTTCTGTGGCTGTAGCGGTCTGTACTAAATTTTGCGCGTGCGTCCTGT
CCTTCCTGTCCACCATCTCCTTTAGCTGCGGCAGCTAATTTAGCTCTCAA
AGTACCTGGTTGCCTCTTATCGGGGTAGTCTATGCCATCACGCCTGGCCG
ATTTGGCACAGCAGCAGGGACCGCCAGGTAGAAGTTTCCGCCGCCCCCGA
GTGAAGGTTGTGGGTGGGCGTGCCTTCGTGTACGACGCGGCGAGCGCGGC
CACGCTTCTCTCCGAGCACCGCATCTGGGCAACACCAGTCGGCGTCAGGC
ACGTACTGTTTTTTGTCTGGTTGGTGGCGTATTGTGCACATGTACAAGGC
AGTAGCACCCCATGCAGGAAGGCTGCCCATCCCACTCTACCCTTGCTCGC
CACGATGTTCGCCCCCTAAAGTAGAGCTTTTCGATGCCAGGCATGTGAGC
TCGTCTACAGGTGTTCCGTGCATGCCGCAGAGATTCCTCCGGGAATAGTG
AATAGACACCAGTGCCGACCGATTTGATGAATAACCCGCAGCCACCGCAG
TTCATGCCGCCAACGAGTCTGGTGGAACGCCTAGCACAACACCCGGGCGC
CTTCCTACAAAGTTTTGCTAGTGCTTGGTTTGCTGTTAACTGACAGCTTG
CGTTGCGTACCCGCTTTCCTGCTGCCCCCCACCCCTTTGTAACGCTTCTC
AATCGAACCGAACAGGCGCGCCCGCAACAAGTCCGCTGAGCAAAACTTTC
CTTGCGTGCTGTCGCAAGAACAAGCAGCGCTGGTCTTGAGCAGAAACCTC
GCGGACGTCACCTACGATTCCTCTTCCGAGGAGGGGCACCAGACGCGCGC
TGGAGCCTGCGGAGGAATTGAAGATCAAGAGGTGGTAAGCCCTGATCGCG
CCTGTGTAGAAGCGATTGTTGGCGGACAATTCAAAAGCAGCTATGTACGT
CGACGACGTATCAGCCGTGCTTTCTCTCGCTGTCGCTGGAATACCTGTCG
AAAGTATCCTACTACTACTGTACATATAGCAGCAAGAACACACAGCAGTT
GATCTGTGGCTTTTCCTCGACCTTGTTCGTCTGTTTGTTTTAACTGCTGT
GGTTGCGCGGCATCTACAATAACTATTTATGTACGAACGTTGCTCACCAC
TCACTTTGCAGATTTTCACGCTTGAGATCGTGCCTCGCATTTCGATTCAC
ACCGCGCTCTTACACTGCGTTCGCTGCTCCACAACAATCCTCCCTCATAA
TCAATACATCTGCAAAATATGAGGAGGAGTCGACGGAGGGCATCCGTTCG
TCGATATGGCAATTTCCGGAGACTCCGGCAGAGAAGAAATCCATGGCGGT
GTTTGAGGATCTATGGGCCAAAGGTCTGTGCGCCGTCAGCGGAAGCAACT
ACGGTGCGGACTATGTCGTCTACAATGGTAAGGAAACTTGCTAGGGTTGG
TTTTGATGGAGAGCAACGCATAAAACCACCGCTGGCTCTTACGGCGCTGA
TGCTTTAATCCTTTGTGCTGTCGCTTAAGAAAACCCTCGTTTCCCTGGAT
TTTGACAGGCAAGAAACCACTTTTGTTTCGCTCCCGTCGATTGCTGCGTT
GGATTACGCTCATTTCGTGGCGCACAAATGACCACTGGCTTCGTGGCACA
CAAATGCGGTGGGCGTCTATCCAGGTCCTCCGACGGAAAGGCACTCGGTC
GCGGCCGTGATGGTTGGCAGAGGCGCCAACGACGAGCTGTCTCCAGCGGA
AGTGTCTGGTTTTGCCAGGGTGCAGCAGGCGGTAGGGAAGCGCTCGGTTA
TTGCCACGGCTCCGCGTGCGACAGAGGTTCCGGCGTCTCCGCCGATGGGA
ACGGGAGCGGCGGCGTCGGCGGCGGCGGCATTAGCAGCACCGCGCAACGT
CGAAGCGGGGCCGACCGATACTGGGCGGATAACCGCAGTAGCTCCTCGCC
ATCAGGGGGCAGCAGCAGCAGCAGGAGCAGCAACGAACGAAGGGGTGCGT
TACGTCACGCTGCAGTTTCATTCTGTGAGCGGCCGCACGTGACGGACGCA
GCATTTTTGGAACAATGGAGTCTTATCGGCATCCTCGTCTGTGGCGTGCG
CCGAAAGCCGACAACTCGCCCCTAGGTGGCGGATCGAGCAAAGCGGCGTG
GCACACATTGTTGGAAGCTTTTGTGCCCCGCTCTCCCCCCGAAGCGTGCC
GAAGGGGGTTCGGCCGAATACGTTGTCTATAAAAGGGAGTGATGGTCAGC
CAGACGGCTCATAACTGATGTCATGGCGTTTAGTTTTTGCGGGGTACAGA
TGATGCTGTGCATGTCGTCGGTATTGACCATGATGTTGATGTGGGCGGGC
AAAAGGCGCGCGTAGCCCACCGCTCTAGAACGGAGAGTGAATGCGGCGGG
GTGTTGACGCAGCAAACGTGCAACCACAAGCAGCGTCTTCCCGTATCGTG
CGCCTCTGCAAGCTTACCCGTGAGCGACCGTAGATTCGTTTCTGTTTGGT
TTGGTGTTTTCCGCGGACTGCGCTTGTGAGTGGACGTGCCTACTGTCTGT
TTCATCATCGTTCATCGAAGGACGAGCTTTGAAGGCGGACTTAGGCTGCT
GAGCCAGGTCTGTTGTTGTTGCGAATGCTGTCATAGGAAGCACCACTTGA
TATGCTGTTGTGCGTGCTTTGTTCCGTGGTCAGCTGAAAGGTTAATAACA
AATAAGATTTTCCGTGCTTTTTTGTGTTGTATATGGTGCTCGGACCTGAT
ATAGGTGCCAAAAACGCACACTATGTACAGAATTCGTTCCACGAAACGTC
GGCAACAAAGGTAGCCAATGTTTGGTCGATGGAGAGAGAGCGCCACCTCT
GCCTGATTCTGCAGCCGTGAAACGAAGTGTTTTTGATGGCTTGCGGTGCG
CGATATGGCTTTGGCTGTACTACTGTCGTAGACATGGGGTCGGGGTAATT
CGCCGCAGACTGTCGTTGGCTCAATACCTTGCAGTGTAGTCTTCCCAACC
CAACCCACAACCCAACCCCAACCGAACCCCCACCCAGCAATGAAGTAGGA
AGTCACCCTTATGAGGGGTGTAAGGGGTATGATATGAACCTCC
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Coding sequence (CDS) from alignment at S-firma_M_contig9327:370..4012-

>mRNA_S-firma_M_contig9327.20287.1 ID=mRNA_S-firma_M_contig9327.20287.1|Name=mRNA_S-firma_M_contig9327.20287.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1704bp|location=Sequence derived from alignment at S-firma_M_contig9327:370..4012- (Sphaerotrichia firma Sfir_13m male)
ATGCCATCACGCCTGGCCGATTTGGCACAGCAGCAGGGACCGCCAGGTAG
AAGTTTCCGCCGCCCCCGAGTGAAGGTTGTGGGTGGGCGTGCCTTCGTGT
ACGACGCGGCGAGCGCGGCCACGCTTCTCTCCGAGCACCGCATCTGGGCA
ACACCAGTCGGCGTCAGATGCCATCACGCCTGGCCGATTTGGCACAGCAG
CAGGGACCGCCAGGTAGAAGTTTCCGCCGCCCCCGAGTGAAGGTTGTGGG
TGGGCGTGCCTTCGTGTACGACGCGGCGAGCGCGGCCACGCTTCTCTCCG
AGCACCGCATCTGGGCAACACCAGTCGGCGTCAGGCGCGCCCGCAACAAG
TCCGCTGAGCAAAACTTTCCTTGCGTGCTGTCGCAAGAACAAGCAGCGCT
GGTCTTGAGCAGAAACCTCGCGGACGTCACCTACGATTCCTCTTCCGAGG
AGGGGCACCAGACGCGCGCTGGAGCCTGCGGAGGAATTGAAGATCAAGAG
GTGGCGCGCCCGCAACAAGTCCGCTGAGCAAAACTTTCCTTGCGTGCTGT
CGCAAGAACAAGCAGCGCTGGTCTTGAGCAGAAACCTCGCGGACGTCACC
TACGATTCCTCTTCCGAGGAGGGGCACCAGACGCGCGCTGGAGCCTGCGG
AGGAATTGAAGATCAAGAGGTGTCGACGGAGGGCATCCGTTCGTCGATAT
GGCAATTTCCGGAGACTCCGGCAGAGAAGAAATCCATGGCGGTGTTTGAG
GATCTATGGGCCAAAGGTCTGTGCGCCGTCAGCGGAAGCAACTACGGTGC
GGACTATGTCGTCTACAATGTCGACGGAGGGCATCCGTTCGTCGATATGG
CAATTTCCGGAGACTCCGGCAGAGAAGAAATCCATGGCGGTGTTTGAGGA
TCTATGGGCCAAAGGTCTGTGCGCCGTCAGCGGAAGCAACTACGGTGCGG
ACTATGTCGTCTACAATGGTCCTCCGACGGAAAGGCACTCGGTCGCGGCC
GTGATGGTTGGCAGAGGCGCCAACGACGAGCTGTCTCCAGCGGAAGTGTC
TGGTTTTGCCAGGGTGCAGCAGGCGGTAGGGAAGCGCTCGGTTATTGCCA
CGGCTCCGCGTGCGACAGAGGTTCCGGCGTCTCCGCCGATGGGAACGGGA
GCGGCGGCGTCGGCGGCGGCGGCATTAGCAGCACCGCGCAACGTCGAAGC
GGGGCCGACCGATACTGGGCGGATAACCGCAGTAGCTCCTCGCCATCAGG
GGGCAGCAGCAGCAGCAGGAGCAGCAACGAACGAAGGGGTGCGTTACGTC
ACGCTGCAGTTTCATTCTGTGAGCGGCCGCACGTGAGTCCTCCGACGGAA
AGGCACTCGGTCGCGGCCGTGATGGTTGGCAGAGGCGCCAACGACGAGCT
GTCTCCAGCGGAAGTGTCTGGTTTTGCCAGGGTGCAGCAGGCGGTAGGGA
AGCGCTCGGTTATTGCCACGGCTCCGCGTGCGACAGAGGTTCCGGCGTCT
CCGCCGATGGGAACGGGAGCGGCGGCGTCGGCGGCGGCGGCATTAGCAGC
ACCGCGCAACGTCGAAGCGGGGCCGACCGATACTGGGCGGATAACCGCAG
TAGCTCCTCGCCATCAGGGGGCAGCAGCAGCAGCAGGAGCAGCAACGAAC
GAAGGGGTGCGTTACGTCACGCTGCAGTTTCATTCTGTGAGCGGCCGCAC
GTGA
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