prot_S-firma_M_contig926.20207.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig926.20207.1
Unique Nameprot_S-firma_M_contig926.20207.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length257
Homology
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BLAST of mRNA_S-firma_M_contig926.20207.1 vs. uniprot
Match: A0A6H5JLN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.380e-55
Identity = 103/188 (54.79%), Postives = 130/188 (69.15%), Query Frame = 0 
Query:   71 MLSVRLLRVRGVLIPDSTSSTASPSEQVPSWTVELRHGPEKHRTSFLALAPS--NPAAPLLQHEPRRTDLRTASGSPWRD-IEFEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEKRMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLWKLKHH 255
            M S RL++V GVL+P+   +     + V +W V LRHG ++HR  F AL  S  N   P L  EPRRTDL T SGSP  + +EFED G  EKV+V +LFD   +    + KRQLFRHS+ASID+ AFR+QPEKR+E+WLPLQP N   D RDYG++Q+++MYTDD V QGYMFGLFCGL+ L +L  H
Sbjct:    1 MFSCRLMKVNGVLLPEVLGALGGEGQLV-AWKVHLRHGSQEHRAQFTALPSSKNNSTTPSLS-EPRRTDLVTISGSPSNEEVEFEDKGVGEKVEVAVLFDLIARE---MPKRQLFRHSIASIDLDAFRAQPEKRVELWLPLQPVNSGNDLRDYGSIQISIMYTDDCVTQGYMFGLFCGLT-LPRLSIH 182
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig926.20207.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLN7_9PHAE4.380e-5554.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 67..256
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 39..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 55..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig926contigS-firma_M_contig926:11974..15155 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig926.20207.1mRNA_S-firma_M_contig926.20207.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig926 11769..17101 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig926.20207.1 ID=prot_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=257bp
MGCTAFSHSALRTPHSPLARVCRIRRTRARRSTYQPTPLLSLSFACCSLG
LSLLTAASQPRAAATAAAGIMLSVRLLRVRGVLIPDSTSSTASPSEQVPS
WTVELRHGPEKHRTSFLALAPSNPAAPLLQHEPRRTDLRTASGSPWRDIE
FEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEK
RMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLW
KLKHHF*
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