mRNA_S-firma_M_contig926.20207.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig926.20207.1
Unique NamemRNA_S-firma_M_contig926.20207.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig926.20207.1 vs. uniprot
Match: A0A6H5JLN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN7_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 9.170e-50
Identity = 103/188 (54.79%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  416 MLSVRLLRVRGVLIPDSTSSTASPSEQVPSWTVELRHGPEKHRTSFLALAPS--NPAAPLLQHEPRRTDLRTASGSPWRD-IEFEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEKRMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLWKLKHH 970
            M S RL++V GVL+P+   +     + V +W V LRHG ++HR  F AL  S  N   P L  EPRRTDL T SGSP  + +EFED G  EKV+V +LFD   +    + KRQLFRHS+ASID+ AFR+QPEKR+E+WLPLQP N   D RDYG++Q+++MYTDD V QGYMFGLFCGL+ L +L  H
Sbjct:    1 MFSCRLMKVNGVLLPEVLGALGGEGQLV-AWKVHLRHGSQEHRAQFTALPSSKNNSTTPSLS-EPRRTDLVTISGSPSNEEVEFEDKGVGEKVEVAVLFDLIARE---MPKRQLFRHSIASIDLDAFRAQPEKRVELWLPLQPVNSGNDLRDYGSIQISIMYTDDCVTQGYMFGLFCGLT-LPRLSIH 182          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig926.20207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLN7_9PHAE9.170e-5054.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig926contigS-firma_M_contig926:11769..17101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons6
Model size2898
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig926.20207.1prot_S-firma_M_contig926.20207.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig926 11974..15155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828753.359824-UTR-S-firma_M_contig926:11768..119731622828753.359824-UTR-S-firma_M_contig926:11768..11973Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 11769..11973 +
1697105141.7140133-UTR-S-firma_M_contig926:11768..119731697105141.7140133-UTR-S-firma_M_contig926:11768..11973Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 11769..11973 +
1622828753.4569285-UTR-S-firma_M_contig926:15155..156381622828753.4569285-UTR-S-firma_M_contig926:15155..15638Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 15156..15638 +
1697105141.7969182-UTR-S-firma_M_contig926:15155..156381697105141.7969182-UTR-S-firma_M_contig926:15155..15638Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 15156..15638 +
1622828753.4689395-UTR-S-firma_M_contig926:15662..171011622828753.4689395-UTR-S-firma_M_contig926:15662..17101Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 15663..17101 +
1697105141.8084571-UTR-S-firma_M_contig926:15662..171011697105141.8084571-UTR-S-firma_M_contig926:15662..17101Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig926 15663..17101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828753.3758426-CDS-S-firma_M_contig926:11973..123571622828753.3758426-CDS-S-firma_M_contig926:11973..12357Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 11974..12357 +
1697105141.7293203-CDS-S-firma_M_contig926:11973..123571697105141.7293203-CDS-S-firma_M_contig926:11973..12357Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 11974..12357 +
1622828753.3919396-CDS-S-firma_M_contig926:13234..133621622828753.3919396-CDS-S-firma_M_contig926:13234..13362Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 13235..13362 +
1697105141.7486978-CDS-S-firma_M_contig926:13234..133621697105141.7486978-CDS-S-firma_M_contig926:13234..13362Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 13235..13362 +
1622828753.4084852-CDS-S-firma_M_contig926:14302..143921622828753.4084852-CDS-S-firma_M_contig926:14302..14392Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 14303..14392 +
1697105141.7604556-CDS-S-firma_M_contig926:14302..143921697105141.7604556-CDS-S-firma_M_contig926:14302..14392Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 14303..14392 +
1622828753.4251516-CDS-S-firma_M_contig926:14677..147851622828753.4251516-CDS-S-firma_M_contig926:14677..14785Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 14678..14785 +
1697105141.7722037-CDS-S-firma_M_contig926:14677..147851697105141.7722037-CDS-S-firma_M_contig926:14677..14785Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 14678..14785 +
1622828753.441851-CDS-S-firma_M_contig926:15094..151551622828753.441851-CDS-S-firma_M_contig926:15094..15155Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 15095..15155 +
1697105141.7849643-CDS-S-firma_M_contig926:15094..151551697105141.7849643-CDS-S-firma_M_contig926:15094..15155Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig926 15095..15155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig926.20207.1

>prot_S-firma_M_contig926.20207.1 ID=prot_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=257bp
MGCTAFSHSALRTPHSPLARVCRIRRTRARRSTYQPTPLLSLSFACCSLG
LSLLTAASQPRAAATAAAGIMLSVRLLRVRGVLIPDSTSSTASPSEQVPS
WTVELRHGPEKHRTSFLALAPSNPAAPLLQHEPRRTDLRTASGSPWRDIE
FEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEK
RMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLW
KLKHHF*
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mRNA from alignment at S-firma_M_contig926:11769..17101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig926.20207.1 ID=mRNA_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5333bp|location=Sequence derived from alignment at S-firma_M_contig926:11769..17101+ (Sphaerotrichia firma Sfir_13m male)
CTGCTGATGAGGTGTGATCGCGGCTACGTACTTACAGACATACCTGTTCT AACTTTTGGAGCACACCAAAACGCCTAAGGAAGTGTGGAGGTATGAATGG CATGATGGTGCCGCCTTTGGCCGCGTGCAAAACCTTGCACATGGCATGGC ATGTGGTCTTCTTGGTATTTCGCCGCGCCGGTTCTCCGTTTACCGATGAT TCCCGATGGGGTGTACCGCTTTCTCGCACTCCGCACTCCGCACTCCGCAC TCTCCGCTCGCCCGCGTTTGCCGCATACGCCGCACACGCGCCCGCCGCAG CACATACCAGCCCACCCCTCTGCTCTCTCTTTCCTTCGCTTGCTGTTCTC TCGGCCTTTCTCTCCTCACCGCCGCCTCCCAGCCTCGTGCTGCTGCTACT GCTGCTGCTGGGATCATGCTCAGCGTACGCTTGCTCCGAGTACGGGGTGT TCTGATACCCGACTCTACATCATCAACAGCGTCTCCATCCGAGCAGGTGC CGTCTTGGACGGTGGAGCTGCGGCACGGGCCTGAAAAGCATCGGACATCG TTTTTGGCCCTCGCACCAAGCAATCCAGCAGCCCCGCTGGTGAGAGAACT TGGGGAGAACGATACGAAGTAAGAAGCCGATACTGATAGACCATACATAC TCTGTACCTCGAAAACGGAAATGTGTGCGTTGGGTTTGAATCGTTCGTAC GATAGGCCTTCGATAGCCCGACCTGCAAACTACGGAGCATACGGCCCGGT TGATTTGTTGGGTTATCAATCAAGTTTGCGGGGAAGGTGTGCTGTTGAAA TGCATGTTTGCCAGCCTGTGGAAAAGCCCCGAGGCAGGCCCTAAGGTTTC CTCTAACTTCAAATGGAGCGCCACCACCACGGCACCACGGACGATCTTCG TGGCCTGTGGCCAGATCAGAACGGCGGCCTAAAGGCAACGACATTTGTTT CGAAGAACAGCGTGTCAGCGGGCATCATAGCCCCGCGAGCTGCTGCTGCC GTGTGCCTTCTTGGTGTAAAGCAGCGTGGTAAATACCTCGTGCATCCGGT TATCGAAGAAGGAGGACTCTGTGATGAATTTTTTACCCATACAAATCCCT AGGGTTGCCTTCGCGCATCCATGCACACAACTGAAAACGTATGTACGCAT CCGTTTCTTTCCAAACTTTTCGGGCTAAATAACGTTGACAAAACGATAAA ACACATTGCGCAAGAGACGTGTCTACCTTGTATTTGTACGTATCCGTCAG GAACGGGTGCGTAAATCGCCCTGGTGCAACGGCCGTAGCATGCGTTTCCA GATATACTCACAACTGGCATCAATATATCGGTGAAATATTAGAACTCAAA CCGGTGCACTGCAGCCTGTCTGTGTCTGTCCACCGTGTTTCCGACCCCCA TCTCGCTGGTTCGACCCTCCCGCCTCCCGCACGAATTGAATTTACACCGT CCGCCGTCTCCTTCAGCTCCAGCACGAGCCGCGACGTACAGACCTGAGGA CGGCTTCCGGCTCGCCCTGGAGAGACATCGAGTTCGAAGACATGGGGGGC GAGGAGAAGGTCGACGTTACGCTCCTCTTCGATCCGTCGCCCAAGTGAGA CAAAAAAAAAAAAAAGTTGTAGTCTATCTACAAGCATACAGTGTATACAT ACGTGCATACGTGCATGATATGCATGATATGTTTGTTTCCGACTCTTTTA TTTTCTTGTATTTTATCGCTCTGCCGACCCTTCGGGTCCATTTTATTTTT GTATACCTTTTTTTAGGTATGTGACCACGGAAATTGGCCGCGTCAAGTGA TGGATTAGTACGGAGAGATTGAGACAGAGGGAGGTACTGGATAGAGAGAC CGGGATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAACAAATT CATCCCAAATCCAAGCCCCCTGCCGTCGTCGAAAAACAACACTACAGGAG GTACCCCAGCACGTGCCGAACGGCACGAATCAACTGCCTCTGTTTTTCTA ACCGTTCGTTGGGCTTTCCAACCCGCAGTCAGACAGCAGTCAGCACAACA ATGTTTGCGAAACGTAATAATCATCTCCGGCGCAACGAACCGTTGATCAG CTTCAGGCCCAACCATGGATCTGGAACTAAATGGATGGATGTTTCAGCAT TTCCTCCCGTGTCTGGTGTCCCTTCAGCCCTACAGCCTGCTGTTGCCCTC AATCGAATGCGGCATTCCGCCGTACATACGTATTTAGCGCCAGCGAAACG CACGACCCTTCCAAGGGACAGCAGTTTAGTATCGCAGGGTGTGCATGTGC CATAATTTTCCCCGAGTTTCTTTGCGGCGACGATTGTGCCCAGTTTTTGT GACCACGGGCTCCCATGGATGTTTTTGGAATATAGAGCTAATAATGTGAG AAACAAACAAACAAACAAAAAAACGTACACGCATGTGCCGACCGCTGTGC TCCCCCCCCCCCACCCCGTTGCTCTTTTATGTCTGCTTCGTACACGATGC CTTGGTTGCGTCGAACATCATGTGGGTCATTCAGATACCCCAGCGGGGTG AGGAAGCGCCAGCTGTTCCGCCACTCCATGGCGTCGATCGACGTGCAAGC GTTTCGATCGCAGCCGGAGAAGAGGTGAGTTTCGCGAGTACGTACAGCAG AAACATACATACGCGAGTGGAGTGTCCTCCCGTTTGTTTGTTTGTTCCAG CTGGTTTATTCCCGCATATTGCAAATTTTTGGTGACTGCTGTTTTCCATC GCCTTCTTGTCTGACGTCTTATTCCTGCCGTCCACCGGTCGCCGGTCTGT CCGTAGTCATTTTCGTCCAGTCGCTCGAGCCGAGCCTGGTGTGAAAACGT GAACCTCTGATTTCTAACTTCTCCCCGTCCCTTCCTTGGTGTTGGTGTTG GTGTTTCAGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCCGCC AGGACTCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACGGAT GACTACGTGGCCCAAGGGTGAGCGCGACGACAACGTGAAGCCAAGCCAAG ACGACCACCCCCCTGTCTTAGTATGTAGTATGCTGGTGCACTTCAAAGAG CCCCGGAAATCAACCGATGCTCTCTGTACCCGCGTGGTCGTTAGAAAAGA CAAGAACACCGTGCGAAGGAATGCAGTTTGTTGGAAATTGTATGCCCTTT TTCTTCGTGTTCGCAAGACCTTTCTGAAGAGATAACCCCAACTTCCGCAA CCCCATCATCTCTCCATCCCCCCCCCCCCCGATGTCCCTTTTACCATCCC CGGTGCCGTTTTCTTTGCTGTTTCAGGTACATGTTTGGGCTGTTTTGCGG TCTGAGTCCTCTGTGGAAGCTCAAGCATCACTTCTGATTCGATACTTCGC TCGGGTCTCTCTTTTTCGCGGAACATCTTCTGGACTTGGCCTTCTTTCTG GCGCGGACACAGCCAGCCGTCGTGTGCACCTCCCTCCTCCTCCGCCTATC TTTGTCTCTCCCTTGGTCTCTCTCAACTGCAAAACAGCCCGATTCGGGCT ATTATATAGTATAGCTGCGGTCGATAGCTGGCTGGCGCACCGGCACGATG GTGATTTTTCTCACAAATGTACGATAAATAGCGTCCACCTGCTACTGCTG TACACTGGGTGGGGAGGTTGGATGGGGCGAATCAAAGGGTGGTTTCATCC GAGTAAGTCGTGGTATCATATCATACGGTCCGTACTATAGTAGCTCTCGG TTCGATCGAGTCGCGACAGTCAGCCCTGCTCTGAGTCCACGAGATGATCA CTGATCGTCCGCAGGCTGGCACGGAAAAAAGGGGCCTGTCAGAGAATGAG AGGGGGGGAGAGAGGGTCGAAAGGTTGGGGGTTCATCGGTCTGGAATGGC AGGCGCGTCAGTCACCAATGAATGGGTGGAGAGCGGCGGCGCTCTACTTC ACCAGTCCTTGACTTTTTAGGCTCGAACAATGTAAAATACTCATGCCTAG AGGGCCTATACTTTTTGTTCCCAAAGCTCGTCCCCGCTCTCGCAGTGTTG TCGGCAGGAAGGACGAAAGTGTGGGGGGGGGGGGGGGCGACTACGATCTG TTTCTCGTGTCGGATATGTGGTCAAAGAGAGTAGGTACTATATGATGGGC GATACGTACGGTAATTTATGTTTACCCTTGTTCGGGGAGGACGAGGCATG GCGAGATACAGTACCACGATGCTGGTGCTATTTGGTACTGGTGCAGGCAG GTGGGCAGTTTCGTTGGTGCTTTCGGTCCGTGTACATGAGTCTCTTTTGA GGTGTTTTGGTGTGTGTCTGCCCATGGGGTGGGCGCCTCCACAAGTACAT TTATTTGTGTGAAAATTTTGGCTCGGTTTTGCTGTTGTTTTCTGGGCAAA GGGTTTATTTACTTGTGTTCGGCAAGGTTTTTACAACGAGGAGTGAGTCG GCCGGCTGTGAGTTTTATCTATCACATTTCAAGGCCGTCTAGCCTAGGTT CAACGGGAACAAGACCCCCCGTTGGTTTACATATACTCATATTCCGCCGG AAGGGGGAACATCCTCCCCCTAATCACCGCCCCATTGTCGATTGACCACG CTTCAAAGCGGTCGGCCTGCTCTCGTAGAAGTAACATCGCACCTAGCTGT TGCGTTGCGTAGTTTTTTTTCTCTGTTCGGTGTGTTGTGTAAGGGGGTAG GAAAATCACCCGGCATGCACCCTTGACGGCTTCATGATGTTTGTGTGCGT CGGGTGAAGGAAGAGAGAGGTGGTGTGGTGTGGTGTGGTGTAGTGTGTTA TCGTGTGCGACGTTCCCGTATTTACAAGCGCGAGAGGCCTTGGCTGGGTG TATGTGCGTGGAAAGGTCCCTTTTGGAAGCTTTTTTTGTCTTGTGTCTGT TTTTTTGTTTCCTGCCTGTTGCCTCTTGTGCGAAGGAATGGTTTTCCTAG TTTTGCCTGTAGAGCGCGGCGGAAGGTGGGCCTTTCTCGCAAACAAGCAC TACAGCAGTACAGTATCACGACAGGATGTACAGCGGTTCGTCTCCATTGG GATTATTTGCAAGGGGGCTTTCAAACATGGATGGAACAGGACTCCTCGCG AACATCCGTACCACGTTCTAGGGTACGAACCGCGGGGTGCGATATCGTCC AACCTTCGCGCGTCGTACCCTCTGATTAGTTACGCGCTGGGGGAAAAAAA AAGATGATTTTTTAAAACATCTATTTGGTGTGGAGATCTAAATACAGCTC TTGCATGTATGCGCATGCAACACGACCGAGCGGGCGGATGTGCCGTATCA ACCTCACAGCTTCGTTTCCAAGCTTCACCGATC
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Coding sequence (CDS) from alignment at S-firma_M_contig926:11769..17101+

>mRNA_S-firma_M_contig926.20207.1 ID=mRNA_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_M_contig926:11769..17101+ (Sphaerotrichia firma Sfir_13m male)
ATGGGGTGTACCGCTTTCTCGCACTCCGCACTCCGCACTCCGCACTCTCC
GCTCGCCCGCGTTTGCCGCATACGCCGCACACGCGCCCGCCGCAGCACAT
ACCAGCCCACCCCTCTGCTCTCTCTTTCCTTCGCTTGCTGTTCTCTCGGC
CTTTCTCTCCTCACCGCCGCCTCCCAGCCTCGTGCTGCTGCTACTGCTGC
TGCTGGGATCATGCTCAGCGTACGCTTGCTCCGAGTACGGGGTGTTCTGA
TACCCGACTCTACATCATCAACAGCGTCTCCATCCGAGCAGGTGCCGTCT
TGGACGGTGGAGCTGCGGCACGGGCCTGAAAAGCATCGGACATCGTTTTT
GGCCCTCGCACCAAGCAATCCAGCAGCCCCGCTGATGGGGTGTACCGCTT
TCTCGCACTCCGCACTCCGCACTCCGCACTCTCCGCTCGCCCGCGTTTGC
CGCATACGCCGCACACGCGCCCGCCGCAGCACATACCAGCCCACCCCTCT
GCTCTCTCTTTCCTTCGCTTGCTGTTCTCTCGGCCTTTCTCTCCTCACCG
CCGCCTCCCAGCCTCGTGCTGCTGCTACTGCTGCTGCTGGGATCATGCTC
AGCGTACGCTTGCTCCGAGTACGGGGTGTTCTGATACCCGACTCTACATC
ATCAACAGCGTCTCCATCCGAGCAGGTGCCGTCTTGGACGGTGGAGCTGC
GGCACGGGCCTGAAAAGCATCGGACATCGTTTTTGGCCCTCGCACCAAGC
AATCCAGCAGCCCCGCTGCTCCAGCACGAGCCGCGACGTACAGACCTGAG
GACGGCTTCCGGCTCGCCCTGGAGAGACATCGAGTTCGAAGACATGGGGG
GCGAGGAGAAGGTCGACGTTACGCTCCTCTTCGATCCGTCGCCCAACTCC
AGCACGAGCCGCGACGTACAGACCTGAGGACGGCTTCCGGCTCGCCCTGG
AGAGACATCGAGTTCGAAGACATGGGGGGCGAGGAGAAGGTCGACGTTAC
GCTCCTCTTCGATCCGTCGCCCAAATACCCCAGCGGGGTGAGGAAGCGCC
AGCTGTTCCGCCACTCCATGGCGTCGATCGACGTGCAAGCGTTTCGATCG
CAGCCGGAGAAGAGATACCCCAGCGGGGTGAGGAAGCGCCAGCTGTTCCG
CCACTCCATGGCGTCGATCGACGTGCAAGCGTTTCGATCGCAGCCGGAGA
AGAGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCCGCCAGGAC
TCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACGGATGACTA
CGTGGCCCAAGGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCC
GCCAGGACTCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACG
GATGACTACGTGGCCCAAGGGTACATGTTTGGGCTGTTTTGCGGTCTGAG
TCCTCTGTGGAAGCTCAAGCATCACTTCTGAGTACATGTTTGGGCTGTTT
TGCGGTCTGAGTCCTCTGTGGAAGCTCAAGCATCACTTCTGA
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