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Homology
BLAST of mRNA_S-firma_M_contig926.20207.1 vs. uniprot
Match: A0A6H5JLN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN7_9PHAE) HSP 1 Score: 184 bits (466), Expect = 9.170e-50 Identity = 103/188 (54.79%), Postives = 130/188 (69.15%), Query Frame = 2
Query: 416 MLSVRLLRVRGVLIPDSTSSTASPSEQVPSWTVELRHGPEKHRTSFLALAPS--NPAAPLLQHEPRRTDLRTASGSPWRD-IEFEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEKRMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLWKLKHH 970
M S RL++V GVL+P+ + + V +W V LRHG ++HR F AL S N P L EPRRTDL T SGSP + +EFED G EKV+V +LFD + + KRQLFRHS+ASID+ AFR+QPEKR+E+WLPLQP N D RDYG++Q+++MYTDD V QGYMFGLFCGL+ L +L H
Sbjct: 1 MFSCRLMKVNGVLLPEVLGALGGEGQLV-AWKVHLRHGSQEHRAQFTALPSSKNNSTTPSLS-EPRRTDLVTISGSPSNEEVEFEDKGVGEKVEVAVLFDLIARE---MPKRQLFRHSIASIDLDAFRAQPEKRVELWLPLQPVNSGNDLRDYGSIQISIMYTDDCVTQGYMFGLFCGLT-LPRLSIH 182
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Exons | 6 |
| Model size | 2898 |
| Cds size | 771 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828753.359824-UTR-S-firma_M_contig926:11768..11973 | 1622828753.359824-UTR-S-firma_M_contig926:11768..11973 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 11769..11973 + |
| 1697105141.7140133-UTR-S-firma_M_contig926:11768..11973 | 1697105141.7140133-UTR-S-firma_M_contig926:11768..11973 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 11769..11973 + |
| 1622828753.4569285-UTR-S-firma_M_contig926:15155..15638 | 1622828753.4569285-UTR-S-firma_M_contig926:15155..15638 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 15156..15638 + |
| 1697105141.7969182-UTR-S-firma_M_contig926:15155..15638 | 1697105141.7969182-UTR-S-firma_M_contig926:15155..15638 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 15156..15638 + |
| 1622828753.4689395-UTR-S-firma_M_contig926:15662..17101 | 1622828753.4689395-UTR-S-firma_M_contig926:15662..17101 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 15663..17101 + |
| 1697105141.8084571-UTR-S-firma_M_contig926:15662..17101 | 1697105141.8084571-UTR-S-firma_M_contig926:15662..17101 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig926 15663..17101 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828753.3758426-CDS-S-firma_M_contig926:11973..12357 | 1622828753.3758426-CDS-S-firma_M_contig926:11973..12357 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 11974..12357 + |
| 1697105141.7293203-CDS-S-firma_M_contig926:11973..12357 | 1697105141.7293203-CDS-S-firma_M_contig926:11973..12357 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 11974..12357 + |
| 1622828753.3919396-CDS-S-firma_M_contig926:13234..13362 | 1622828753.3919396-CDS-S-firma_M_contig926:13234..13362 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 13235..13362 + |
| 1697105141.7486978-CDS-S-firma_M_contig926:13234..13362 | 1697105141.7486978-CDS-S-firma_M_contig926:13234..13362 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 13235..13362 + |
| 1622828753.4084852-CDS-S-firma_M_contig926:14302..14392 | 1622828753.4084852-CDS-S-firma_M_contig926:14302..14392 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 14303..14392 + |
| 1697105141.7604556-CDS-S-firma_M_contig926:14302..14392 | 1697105141.7604556-CDS-S-firma_M_contig926:14302..14392 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 14303..14392 + |
| 1622828753.4251516-CDS-S-firma_M_contig926:14677..14785 | 1622828753.4251516-CDS-S-firma_M_contig926:14677..14785 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 14678..14785 + |
| 1697105141.7722037-CDS-S-firma_M_contig926:14677..14785 | 1697105141.7722037-CDS-S-firma_M_contig926:14677..14785 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 14678..14785 + |
| 1622828753.441851-CDS-S-firma_M_contig926:15094..15155 | 1622828753.441851-CDS-S-firma_M_contig926:15094..15155 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 15095..15155 + |
| 1697105141.7849643-CDS-S-firma_M_contig926:15094..15155 | 1697105141.7849643-CDS-S-firma_M_contig926:15094..15155 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig926 15095..15155 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig926.20207.1 >prot_S-firma_M_contig926.20207.1 ID=prot_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=257bp
MGCTAFSHSALRTPHSPLARVCRIRRTRARRSTYQPTPLLSLSFACCSLG LSLLTAASQPRAAATAAAGIMLSVRLLRVRGVLIPDSTSSTASPSEQVPS WTVELRHGPEKHRTSFLALAPSNPAAPLLQHEPRRTDLRTASGSPWRDIE FEDMGGEEKVDVTLLFDPSPKYPSGVRKRQLFRHSMASIDVQAFRSQPEK RMEVWLPLQPANPRQDSRDYGAMQVAVMYTDDYVAQGYMFGLFCGLSPLW KLKHHF* back to topmRNA from alignment at S-firma_M_contig926:11769..17101+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig926.20207.1 ID=mRNA_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5333bp|location=Sequence derived from alignment at S-firma_M_contig926:11769..17101+ (Sphaerotrichia firma Sfir_13m male) CTGCTGATGAGGTGTGATCGCGGCTACGTACTTACAGACATACCTGTTCT
AACTTTTGGAGCACACCAAAACGCCTAAGGAAGTGTGGAGGTATGAATGG
CATGATGGTGCCGCCTTTGGCCGCGTGCAAAACCTTGCACATGGCATGGC
ATGTGGTCTTCTTGGTATTTCGCCGCGCCGGTTCTCCGTTTACCGATGAT
TCCCGATGGGGTGTACCGCTTTCTCGCACTCCGCACTCCGCACTCCGCAC
TCTCCGCTCGCCCGCGTTTGCCGCATACGCCGCACACGCGCCCGCCGCAG
CACATACCAGCCCACCCCTCTGCTCTCTCTTTCCTTCGCTTGCTGTTCTC
TCGGCCTTTCTCTCCTCACCGCCGCCTCCCAGCCTCGTGCTGCTGCTACT
GCTGCTGCTGGGATCATGCTCAGCGTACGCTTGCTCCGAGTACGGGGTGT
TCTGATACCCGACTCTACATCATCAACAGCGTCTCCATCCGAGCAGGTGC
CGTCTTGGACGGTGGAGCTGCGGCACGGGCCTGAAAAGCATCGGACATCG
TTTTTGGCCCTCGCACCAAGCAATCCAGCAGCCCCGCTGGTGAGAGAACT
TGGGGAGAACGATACGAAGTAAGAAGCCGATACTGATAGACCATACATAC
TCTGTACCTCGAAAACGGAAATGTGTGCGTTGGGTTTGAATCGTTCGTAC
GATAGGCCTTCGATAGCCCGACCTGCAAACTACGGAGCATACGGCCCGGT
TGATTTGTTGGGTTATCAATCAAGTTTGCGGGGAAGGTGTGCTGTTGAAA
TGCATGTTTGCCAGCCTGTGGAAAAGCCCCGAGGCAGGCCCTAAGGTTTC
CTCTAACTTCAAATGGAGCGCCACCACCACGGCACCACGGACGATCTTCG
TGGCCTGTGGCCAGATCAGAACGGCGGCCTAAAGGCAACGACATTTGTTT
CGAAGAACAGCGTGTCAGCGGGCATCATAGCCCCGCGAGCTGCTGCTGCC
GTGTGCCTTCTTGGTGTAAAGCAGCGTGGTAAATACCTCGTGCATCCGGT
TATCGAAGAAGGAGGACTCTGTGATGAATTTTTTACCCATACAAATCCCT
AGGGTTGCCTTCGCGCATCCATGCACACAACTGAAAACGTATGTACGCAT
CCGTTTCTTTCCAAACTTTTCGGGCTAAATAACGTTGACAAAACGATAAA
ACACATTGCGCAAGAGACGTGTCTACCTTGTATTTGTACGTATCCGTCAG
GAACGGGTGCGTAAATCGCCCTGGTGCAACGGCCGTAGCATGCGTTTCCA
GATATACTCACAACTGGCATCAATATATCGGTGAAATATTAGAACTCAAA
CCGGTGCACTGCAGCCTGTCTGTGTCTGTCCACCGTGTTTCCGACCCCCA
TCTCGCTGGTTCGACCCTCCCGCCTCCCGCACGAATTGAATTTACACCGT
CCGCCGTCTCCTTCAGCTCCAGCACGAGCCGCGACGTACAGACCTGAGGA
CGGCTTCCGGCTCGCCCTGGAGAGACATCGAGTTCGAAGACATGGGGGGC
GAGGAGAAGGTCGACGTTACGCTCCTCTTCGATCCGTCGCCCAAGTGAGA
CAAAAAAAAAAAAAAGTTGTAGTCTATCTACAAGCATACAGTGTATACAT
ACGTGCATACGTGCATGATATGCATGATATGTTTGTTTCCGACTCTTTTA
TTTTCTTGTATTTTATCGCTCTGCCGACCCTTCGGGTCCATTTTATTTTT
GTATACCTTTTTTTAGGTATGTGACCACGGAAATTGGCCGCGTCAAGTGA
TGGATTAGTACGGAGAGATTGAGACAGAGGGAGGTACTGGATAGAGAGAC
CGGGATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAACAAATT
CATCCCAAATCCAAGCCCCCTGCCGTCGTCGAAAAACAACACTACAGGAG
GTACCCCAGCACGTGCCGAACGGCACGAATCAACTGCCTCTGTTTTTCTA
ACCGTTCGTTGGGCTTTCCAACCCGCAGTCAGACAGCAGTCAGCACAACA
ATGTTTGCGAAACGTAATAATCATCTCCGGCGCAACGAACCGTTGATCAG
CTTCAGGCCCAACCATGGATCTGGAACTAAATGGATGGATGTTTCAGCAT
TTCCTCCCGTGTCTGGTGTCCCTTCAGCCCTACAGCCTGCTGTTGCCCTC
AATCGAATGCGGCATTCCGCCGTACATACGTATTTAGCGCCAGCGAAACG
CACGACCCTTCCAAGGGACAGCAGTTTAGTATCGCAGGGTGTGCATGTGC
CATAATTTTCCCCGAGTTTCTTTGCGGCGACGATTGTGCCCAGTTTTTGT
GACCACGGGCTCCCATGGATGTTTTTGGAATATAGAGCTAATAATGTGAG
AAACAAACAAACAAACAAAAAAACGTACACGCATGTGCCGACCGCTGTGC
TCCCCCCCCCCCACCCCGTTGCTCTTTTATGTCTGCTTCGTACACGATGC
CTTGGTTGCGTCGAACATCATGTGGGTCATTCAGATACCCCAGCGGGGTG
AGGAAGCGCCAGCTGTTCCGCCACTCCATGGCGTCGATCGACGTGCAAGC
GTTTCGATCGCAGCCGGAGAAGAGGTGAGTTTCGCGAGTACGTACAGCAG
AAACATACATACGCGAGTGGAGTGTCCTCCCGTTTGTTTGTTTGTTCCAG
CTGGTTTATTCCCGCATATTGCAAATTTTTGGTGACTGCTGTTTTCCATC
GCCTTCTTGTCTGACGTCTTATTCCTGCCGTCCACCGGTCGCCGGTCTGT
CCGTAGTCATTTTCGTCCAGTCGCTCGAGCCGAGCCTGGTGTGAAAACGT
GAACCTCTGATTTCTAACTTCTCCCCGTCCCTTCCTTGGTGTTGGTGTTG
GTGTTTCAGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCCGCC
AGGACTCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACGGAT
GACTACGTGGCCCAAGGGTGAGCGCGACGACAACGTGAAGCCAAGCCAAG
ACGACCACCCCCCTGTCTTAGTATGTAGTATGCTGGTGCACTTCAAAGAG
CCCCGGAAATCAACCGATGCTCTCTGTACCCGCGTGGTCGTTAGAAAAGA
CAAGAACACCGTGCGAAGGAATGCAGTTTGTTGGAAATTGTATGCCCTTT
TTCTTCGTGTTCGCAAGACCTTTCTGAAGAGATAACCCCAACTTCCGCAA
CCCCATCATCTCTCCATCCCCCCCCCCCCCGATGTCCCTTTTACCATCCC
CGGTGCCGTTTTCTTTGCTGTTTCAGGTACATGTTTGGGCTGTTTTGCGG
TCTGAGTCCTCTGTGGAAGCTCAAGCATCACTTCTGATTCGATACTTCGC
TCGGGTCTCTCTTTTTCGCGGAACATCTTCTGGACTTGGCCTTCTTTCTG
GCGCGGACACAGCCAGCCGTCGTGTGCACCTCCCTCCTCCTCCGCCTATC
TTTGTCTCTCCCTTGGTCTCTCTCAACTGCAAAACAGCCCGATTCGGGCT
ATTATATAGTATAGCTGCGGTCGATAGCTGGCTGGCGCACCGGCACGATG
GTGATTTTTCTCACAAATGTACGATAAATAGCGTCCACCTGCTACTGCTG
TACACTGGGTGGGGAGGTTGGATGGGGCGAATCAAAGGGTGGTTTCATCC
GAGTAAGTCGTGGTATCATATCATACGGTCCGTACTATAGTAGCTCTCGG
TTCGATCGAGTCGCGACAGTCAGCCCTGCTCTGAGTCCACGAGATGATCA
CTGATCGTCCGCAGGCTGGCACGGAAAAAAGGGGCCTGTCAGAGAATGAG
AGGGGGGGAGAGAGGGTCGAAAGGTTGGGGGTTCATCGGTCTGGAATGGC
AGGCGCGTCAGTCACCAATGAATGGGTGGAGAGCGGCGGCGCTCTACTTC
ACCAGTCCTTGACTTTTTAGGCTCGAACAATGTAAAATACTCATGCCTAG
AGGGCCTATACTTTTTGTTCCCAAAGCTCGTCCCCGCTCTCGCAGTGTTG
TCGGCAGGAAGGACGAAAGTGTGGGGGGGGGGGGGGGCGACTACGATCTG
TTTCTCGTGTCGGATATGTGGTCAAAGAGAGTAGGTACTATATGATGGGC
GATACGTACGGTAATTTATGTTTACCCTTGTTCGGGGAGGACGAGGCATG
GCGAGATACAGTACCACGATGCTGGTGCTATTTGGTACTGGTGCAGGCAG
GTGGGCAGTTTCGTTGGTGCTTTCGGTCCGTGTACATGAGTCTCTTTTGA
GGTGTTTTGGTGTGTGTCTGCCCATGGGGTGGGCGCCTCCACAAGTACAT
TTATTTGTGTGAAAATTTTGGCTCGGTTTTGCTGTTGTTTTCTGGGCAAA
GGGTTTATTTACTTGTGTTCGGCAAGGTTTTTACAACGAGGAGTGAGTCG
GCCGGCTGTGAGTTTTATCTATCACATTTCAAGGCCGTCTAGCCTAGGTT
CAACGGGAACAAGACCCCCCGTTGGTTTACATATACTCATATTCCGCCGG
AAGGGGGAACATCCTCCCCCTAATCACCGCCCCATTGTCGATTGACCACG
CTTCAAAGCGGTCGGCCTGCTCTCGTAGAAGTAACATCGCACCTAGCTGT
TGCGTTGCGTAGTTTTTTTTCTCTGTTCGGTGTGTTGTGTAAGGGGGTAG
GAAAATCACCCGGCATGCACCCTTGACGGCTTCATGATGTTTGTGTGCGT
CGGGTGAAGGAAGAGAGAGGTGGTGTGGTGTGGTGTGGTGTAGTGTGTTA
TCGTGTGCGACGTTCCCGTATTTACAAGCGCGAGAGGCCTTGGCTGGGTG
TATGTGCGTGGAAAGGTCCCTTTTGGAAGCTTTTTTTGTCTTGTGTCTGT
TTTTTTGTTTCCTGCCTGTTGCCTCTTGTGCGAAGGAATGGTTTTCCTAG
TTTTGCCTGTAGAGCGCGGCGGAAGGTGGGCCTTTCTCGCAAACAAGCAC
TACAGCAGTACAGTATCACGACAGGATGTACAGCGGTTCGTCTCCATTGG
GATTATTTGCAAGGGGGCTTTCAAACATGGATGGAACAGGACTCCTCGCG
AACATCCGTACCACGTTCTAGGGTACGAACCGCGGGGTGCGATATCGTCC
AACCTTCGCGCGTCGTACCCTCTGATTAGTTACGCGCTGGGGGAAAAAAA
AAGATGATTTTTTAAAACATCTATTTGGTGTGGAGATCTAAATACAGCTC
TTGCATGTATGCGCATGCAACACGACCGAGCGGGCGGATGTGCCGTATCA
ACCTCACAGCTTCGTTTCCAAGCTTCACCGATC back to topCoding sequence (CDS) from alignment at S-firma_M_contig926:11769..17101+ >mRNA_S-firma_M_contig926.20207.1 ID=mRNA_S-firma_M_contig926.20207.1|Name=mRNA_S-firma_M_contig926.20207.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_M_contig926:11769..17101+ (Sphaerotrichia firma Sfir_13m male) ATGGGGTGTACCGCTTTCTCGCACTCCGCACTCCGCACTCCGCACTCTCC GCTCGCCCGCGTTTGCCGCATACGCCGCACACGCGCCCGCCGCAGCACAT ACCAGCCCACCCCTCTGCTCTCTCTTTCCTTCGCTTGCTGTTCTCTCGGC CTTTCTCTCCTCACCGCCGCCTCCCAGCCTCGTGCTGCTGCTACTGCTGC TGCTGGGATCATGCTCAGCGTACGCTTGCTCCGAGTACGGGGTGTTCTGA TACCCGACTCTACATCATCAACAGCGTCTCCATCCGAGCAGGTGCCGTCT TGGACGGTGGAGCTGCGGCACGGGCCTGAAAAGCATCGGACATCGTTTTT GGCCCTCGCACCAAGCAATCCAGCAGCCCCGCTGATGGGGTGTACCGCTT TCTCGCACTCCGCACTCCGCACTCCGCACTCTCCGCTCGCCCGCGTTTGC CGCATACGCCGCACACGCGCCCGCCGCAGCACATACCAGCCCACCCCTCT GCTCTCTCTTTCCTTCGCTTGCTGTTCTCTCGGCCTTTCTCTCCTCACCG CCGCCTCCCAGCCTCGTGCTGCTGCTACTGCTGCTGCTGGGATCATGCTC AGCGTACGCTTGCTCCGAGTACGGGGTGTTCTGATACCCGACTCTACATC ATCAACAGCGTCTCCATCCGAGCAGGTGCCGTCTTGGACGGTGGAGCTGC GGCACGGGCCTGAAAAGCATCGGACATCGTTTTTGGCCCTCGCACCAAGC AATCCAGCAGCCCCGCTGCTCCAGCACGAGCCGCGACGTACAGACCTGAG GACGGCTTCCGGCTCGCCCTGGAGAGACATCGAGTTCGAAGACATGGGGG GCGAGGAGAAGGTCGACGTTACGCTCCTCTTCGATCCGTCGCCCAACTCC AGCACGAGCCGCGACGTACAGACCTGAGGACGGCTTCCGGCTCGCCCTGG AGAGACATCGAGTTCGAAGACATGGGGGGCGAGGAGAAGGTCGACGTTAC GCTCCTCTTCGATCCGTCGCCCAAATACCCCAGCGGGGTGAGGAAGCGCC AGCTGTTCCGCCACTCCATGGCGTCGATCGACGTGCAAGCGTTTCGATCG CAGCCGGAGAAGAGATACCCCAGCGGGGTGAGGAAGCGCCAGCTGTTCCG CCACTCCATGGCGTCGATCGACGTGCAAGCGTTTCGATCGCAGCCGGAGA AGAGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCCGCCAGGAC TCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACGGATGACTA CGTGGCCCAAGGGATGGAGGTTTGGTTACCTTTGCAGCCCGCCAATCCCC GCCAGGACTCCCGCGATTACGGGGCGATGCAGGTGGCCGTCATGTACACG GATGACTACGTGGCCCAAGGGTACATGTTTGGGCTGTTTTGCGGTCTGAG TCCTCTGTGGAAGCTCAAGCATCACTTCTGAGTACATGTTTGGGCTGTTT TGCGGTCTGAGTCCTCTGTGGAAGCTCAAGCATCACTTCTGA back to top
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