prot_S-firma_M_contig9233.20177.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9233.20177.1
Unique Nameprot_S-firma_M_contig9233.20177.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length194
Homology
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BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 5.850e-95
Identity = 155/193 (80.31%), Postives = 163/193 (84.46%), Query Frame = 0 
Query:    2 GRRDPRLPQFPDASPATCVQAFVDDAFGYYRPGGEVGSPLPLPVQVSLVMTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFYGYIGTLDPADPAAVHAXXXXXDPGLGSDTETSPAGGEAGGAEPLAPPPPRSIDVRVWVTRPHIAVLEFPLSPNTSALLLEGEQGVYYRWQSLIIAQ 194
            GRRDP  PQF DASPATCVQAFVDDAFGY+RPGGEVGSPLPLPVQVSL+MT P +WLCVNVGVDGVDI AKEMSVVWLIVDFFS+YHRSDAYGCPFYGY+GTLDPA+PAA             SD  T+PA  E    EPL PPPPRSIDVRVWVTRPHIAVLEFPLS NTSA LLEGEQG+YYRWQSLIIAQ
Sbjct: 3040 GRRDPLSPQFADASPATCVQAFVDDAFGYFRPGGEVGSPLPLPVQVSLIMTPPHMWLCVNVGVDGVDINAKEMSVVWLIVDFFSNYHRSDAYGCPFYGYMGTLDPAEPAATQEP---------SDDATAPARSEG---EPLLPPPPRSIDVRVWVTRPHIAVLEFPLSRNTSAFLLEGEQGIYYRWQSLIIAQ 3220
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BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Match: A0A7S4W485_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W485_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.710e-9
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 0 
Query:   41 LPLPVQVSLVMTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFY 98
            LPLP Q+++ MT PD W  VN+GVDG++    ++SVVW+++D+F +Y + + YG P++
Sbjct:  106 LPLPFQLTVFMT-PDQWCMVNLGVDGMNASIVDLSVVWILLDYFGTYFKEEGYGYPYF 162
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI5.850e-9580.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4W485_9STRA1.710e-944.83Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9233contigS-firma_M_contig9233:2280..4036 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9233.20177.1mRNA_S-firma_M_contig9233.20177.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9233 2249..4036 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9233.20177.1 ID=prot_S-firma_M_contig9233.20177.1|Name=mRNA_S-firma_M_contig9233.20177.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=194bp
MGRRDPRLPQFPDASPATCVQAFVDDAFGYYRPGGEVGSPLPLPVQVSLV
MTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFYGY
IGTLDPADPAAVHAHAHAHDPGLGSDTETSPAGGEAGGAEPLAPPPPRSI
DVRVWVTRPHIAVLEFPLSPNTSALLLEGEQGVYYRWQSLIIAQ
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