mRNA_S-firma_M_contig9233.20177.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_M_contig9233.20177.1
Unique Name	mRNA_S-firma_M_contig9233.20177.1
Type	mRNA
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)

Homology

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BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 3.960e-96
Identity = 158/201 (78.61%), Postives = 167/201 (83.08%), Query Frame = 2

Query:   11 GFEEQEGMGRRDPRLPQFPDASPATCVQAFVDDAFGYYRPGGEVGSPLPLPVQVSLVMTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFYGYIGTLDPADPAAVHAXXXXXDPGLGSDTETSPAGGEAGGAEPLAPPPPRSIDVRVWVTRPHIAVLEFPLSPNTSALLLEGEQGVYYRWQSLIIAQ 613
            G  E +G GRRDP  PQF DASPATCVQAFVDDAFGY+RPGGEVGSPLPLPVQVSL+MT P +WLCVNVGVDGVDI AKEMSVVWLIVDFFS+YHRSDAYGCPFYGY+GTLDPA+PAA             SD  T+PA  E    EPL PPPPRSIDVRVWVTRPHIAVLEFPLS NTSA LLEGEQG+YYRWQSLIIAQ
Sbjct: 3032 GGHEGKGTGRRDPLSPQFADASPATCVQAFVDDAFGYFRPGGEVGSPLPLPVQVSLIMTPPHMWLCVNVGVDGVDINAKEMSVVWLIVDFFSNYHRSDAYGCPFYGYMGTLDPAEPAATQEP---------SDDATAPARSEG---EPLLPPPPRSIDVRVWVTRPHIAVLEFPLSRNTSAFLLEGEQGIYYRWQSLIIAQ 3220

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BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Match: A0A7S4W485_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W485_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.100e-9
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 2

Query:  152 LPLPVQVSLVMTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFY 325
            LPLP Q+++ MT PD W  VN+GVDG++    ++SVVW+++D+F +Y + + YG P++
Sbjct:  106 LPLPFQLTVFMT-PDQWCMVNLGVDGMNASIVDLSVVWILLDYFGTYFKEEGYGYPYF 162

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9233.20177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G8Y9_ECTSI	3.960e-96	78.61	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S4W485_9STRA	2.100e-9	44.83	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9233	contig	S-firma_M_contig9233:2249..4036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	314.7
Seed ortholog evalue	3e-83
Seed eggNOG ortholog	2880.D7G8Y9
EggNOG free text desc.	regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGs	COG5043@1,KOG1809@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	4
Model size	613
Cds size	582
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9233.20177.1	prot_S-firma_M_contig9233.20177.1	Sphaerotrichia firma Sfir_13m male	polypeptide	S-firma_M_contig9233 2280..4036 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828750.6176-UTR-S-firma_M_contig9233:2248..2279	1622828750.6176-UTR-S-firma_M_contig9233:2248..2279	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9233 2249..2279 +
1697105140.0665076-UTR-S-firma_M_contig9233:2248..2279	1697105140.0665076-UTR-S-firma_M_contig9233:2248..2279	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9233 2249..2279 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828750.631273-CDS-S-firma_M_contig9233:2279..2417	1622828750.631273-CDS-S-firma_M_contig9233:2279..2417	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 2280..2417 +
1697105140.0869968-CDS-S-firma_M_contig9233:2279..2417	1697105140.0869968-CDS-S-firma_M_contig9233:2279..2417	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 2280..2417 +
1622828750.6434083-CDS-S-firma_M_contig9233:2728..2863	1622828750.6434083-CDS-S-firma_M_contig9233:2728..2863	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 2729..2863 +
1697105140.0999527-CDS-S-firma_M_contig9233:2728..2863	1697105140.0999527-CDS-S-firma_M_contig9233:2728..2863	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 2729..2863 +
1622828750.657202-CDS-S-firma_M_contig9233:3217..3340	1622828750.657202-CDS-S-firma_M_contig9233:3217..3340	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 3218..3340 +
1697105140.1114328-CDS-S-firma_M_contig9233:3217..3340	1697105140.1114328-CDS-S-firma_M_contig9233:3217..3340	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 3218..3340 +
1622828750.6732013-CDS-S-firma_M_contig9233:3850..4036	1622828750.6732013-CDS-S-firma_M_contig9233:3850..4036	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 3851..4036 +
1697105140.1229703-CDS-S-firma_M_contig9233:3850..4036	1697105140.1229703-CDS-S-firma_M_contig9233:3850..4036	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9233 3851..4036 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_M_contig9233:2249..4036+
coding sequence from alignment at S-firma_M_contig9233:2249..4036+

protein sequence of mRNA_S-firma_M_contig9233.20177.1

>prot_S-firma_M_contig9233.20177.1 ID=prot_S-firma_M_contig9233.20177.1|Name=mRNA_S-firma_M_contig9233.20177.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=194bp
MGRRDPRLPQFPDASPATCVQAFVDDAFGYYRPGGEVGSPLPLPVQVSLV
MTAPDLWLCVNVGVDGVDIMAKEMSVVWLIVDFFSSYHRSDAYGCPFYGY
IGTLDPADPAAVHAHAHAHDPGLGSDTETSPAGGEAGGAEPLAPPPPRSI
DVRVWVTRPHIAVLEFPLSPNTSALLLEGEQGVYYRWQSLIIAQ

mRNA from alignment at S-firma_M_contig9233:2249..4036+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_M_contig9233.20177.1 ID=mRNA_S-firma_M_contig9233.20177.1|Name=mRNA_S-firma_M_contig9233.20177.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at S-firma_M_contig9233:2249..4036+ (Sphaerotrichia firma Sfir_13m male)
GGCCGACGGGGGTTTTGAGGAGCAAGAGGGGATGGGGCGTCGCGACCCCC
GTCTCCCGCAGTTTCCCGACGCGTCTCCGGCCACGTGCGTGCAAGCGTTC
GTGGATGACGCGTTCGGGTACTACCGTCCGGGGGGGGAGGTCGGGAGTCC
TCTGCCGTTGCCGGTCCAGGTGTGAAAGTGTGCGTGCGTTTTTAGTCAGC
GTGTGCGTGCTTTTGTGTGGTGTGTTTTTTTTGGGGGGTGGGGGGGGGGT
TGGCGCTGTGATTGGTTTCGTCGCTGCTTTGCGCTTCAACCCGCAGGAGA
ATAGCTGTAGCTGTCGCCCGTCATGCATGGTCTGCGGTTTTCGTTGTGGA
AATAAAATCAAACCTGCTGTGCTTCTAGGTTCGTCAACTCGGCGCTCGCT
CTTCTCGCTTGTTTTTGCTCGTTGCGGTTCTGACACCATTTTTGCCCCCC
ACCCGATCGTCTGGTCTCCTTCGAGAGAAGGTGTCGCTCGTCATGACCGC
GCCGGACCTTTGGCTGTGCGTCAATGTCGGGGTGGACGGCGTGGACATCA
TGGCCAAGGAGATGTCGGTCGTTTGGCTCATCGTGGACTTTTTCTCCAGC
TACCATCGGTCCGACGTGAGAGAGAGAGAGAGCAAAGTGACGGAAGACGT
TTTATTTAGATTGATAAATATTATTCGGTGAATTGCAAATTAGGGTTTGA
GTGCTGCATCATGACTACTGCTGGCGCTTGTTTCGTCTTCGAGATTACCG
GTTACCTTTCGTGCCTTGCTCTCTGATTTGTGGGGCGAGTGCCCCCAAAG
AGTGTCGTCTATGCTCGTGCCCCCGGTGGCCGCTCATCCGGTCTCTCTGT
TCGAACATGTAGATACGCTAACAGCAGTATTTGCTCTCTGTAGTTGACAG
CAGTATTTTGCTCTCTAATTTGTGGTGCTGATAGTATTGTGCTTGTACAT
GGTGTGTCTCCACAACCAGGCCTACGGCTGCCCGTTCTACGGGTACATCG
GCACGCTTGACCCCGCCGACCCGGCAGCGGTCCATGCCCATGCCCATGCT
CATGACCCCGGCCTTGGCTCCGACACAGAGACGTCGCCAGCGGTGAGAGA
GACAGAGAGAGACTTGTGGGGAAGAGAGGGAACCACTGCCAGATGCAGTT
TATTTTGTTTGCGTCAATCGTCTTATTCTTTCTTCCTCAGAAAACAAACG
ATGAGGCACGACGGTACTTCGTAGTTTTCTCTGGACGCAGGAAGGCGATG
CGTATGGACGTACACACGTGCGTTGCTTGTCCCTCTCGCCTACGGTATGT
GGCAGTCCAAGGTTGGGGCTGTGTCGGCTCCCTTGCTTTTTTTGCCGCGC
TTTCGGAACCGAATCAACCTAGCAACAGCAGCACCGCTTGCATCCAACCG
TTGTTTCGTTGTCCCCATGTTTCCTCGTGGTTCCGCCAATTTTCTGTCTA
GGTCAAGAAACCATTCTTGGCTCTGCGCTGTTCGGTTTACGTGAGTATCG
TCTCTTGTCGGAATTTTTGGTGTTTCAGCAGTACCGTTTTCGCTTGCCCA
CGTTCCATATCTTGCCGTTCTCGTCTTTTTTTTCGGATATTTGCGTGTTC
AGGGAGGGGAGGCGGGGGGCGCAGAGCCTCTGGCGCCACCCCCCCCGCGC
AGCATCGACGTGCGCGTATGGGTCACCCGGCCGCACATCGCGGTGCTGGA
GTTCCCCCTGTCGCCGAACACGAGCGCGCTGCTACTGGAAGGGGAGCAGG
GTGTGTACTACCGCTGGCAGTCGCTCATCATCGCCCAG

Coding sequence (CDS) from alignment at S-firma_M_contig9233:2249..4036+

>mRNA_S-firma_M_contig9233.20177.1 ID=mRNA_S-firma_M_contig9233.20177.1|Name=mRNA_S-firma_M_contig9233.20177.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1164bp|location=Sequence derived from alignment at S-firma_M_contig9233:2249..4036+ (Sphaerotrichia firma Sfir_13m male)
ATGGGGCGTCGCGACCCCCGTCTCCCGCAGTTTCCCGACGCGTCTCCGGC
CACGTGCGTGCAAGCGTTCGTGGATGACGCGTTCGGGTACTACCGTCCGG
GGGGGGAGGTCGGGAGTCCTCTGCCGTTGCCGGTCCAGATGGGGCGTCGC
GACCCCCGTCTCCCGCAGTTTCCCGACGCGTCTCCGGCCACGTGCGTGCA
AGCGTTCGTGGATGACGCGTTCGGGTACTACCGTCCGGGGGGGGAGGTCG
GGAGTCCTCTGCCGTTGCCGGTCCAGGTGTCGCTCGTCATGACCGCGCCG
GACCTTTGGCTGTGCGTCAATGTCGGGGTGGACGGCGTGGACATCATGGC
CAAGGAGATGTCGGTCGTTTGGCTCATCGTGGACTTTTTCTCCAGCTACC
ATCGGTCCGACGTGTCGCTCGTCATGACCGCGCCGGACCTTTGGCTGTGC
GTCAATGTCGGGGTGGACGGCGTGGACATCATGGCCAAGGAGATGTCGGT
CGTTTGGCTCATCGTGGACTTTTTCTCCAGCTACCATCGGTCCGACGCCT
ACGGCTGCCCGTTCTACGGGTACATCGGCACGCTTGACCCCGCCGACCCG
GCAGCGGTCCATGCCCATGCCCATGCTCATGACCCCGGCCTTGGCTCCGA
CACAGAGACGTCGCCAGCGGCCTACGGCTGCCCGTTCTACGGGTACATCG
GCACGCTTGACCCCGCCGACCCGGCAGCGGTCCATGCCCATGCCCATGCT
CATGACCCCGGCCTTGGCTCCGACACAGAGACGTCGCCAGCGGGAGGGGA
GGCGGGGGGCGCAGAGCCTCTGGCGCCACCCCCCCCGCGCAGCATCGACG
TGCGCGTATGGGTCACCCGGCCGCACATCGCGGTGCTGGAGTTCCCCCTG
TCGCCGAACACGAGCGCGCTGCTACTGGAAGGGGAGCAGGGTGTGTACTA
CCGCTGGCAGTCGCTCATCATCGCCCAGGGAGGGGAGGCGGGGGGCGCAG
AGCCTCTGGCGCCACCCCCCCCGCGCAGCATCGACGTGCGCGTATGGGTC
ACCCGGCCGCACATCGCGGTGCTGGAGTTCCCCCTGTCGCCGAACACGAG
CGCGCTGCTACTGGAAGGGGAGCAGGGTGTGTACTACCGCTGGCAGTCGC
TCATCATCGCCCAG