prot_S-firma_M_contig9062.20002.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9062.20002.1
Unique Nameprot_S-firma_M_contig9062.20002.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length158
Homology
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BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.540e-19
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   82 EKLGDNLEAMANNLRRVSALQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGD 140
            EKLG NL  MA++LRRVSALQ +FG FTSLKTL+ PRGRACWN M EGLV LEEYLHGD
Sbjct: 1405 EKLG-NLATMASDLRRVSALQTEFGAFTSLKTLNNPRGRACWNTMREGLVTLEEYLHGD 1462
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BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.460e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   91 MANNLRRVSALQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGDRGDHHRACAA 150
            MA++LRRVSALQ +FG FTSLKTL +PRGRACWN M EGLV LEEYLHGD     +  AA
Sbjct:    1 MASDLRRVSALQTEFGAFTSLKTLSRPRGRACWNTMREGLVTLEEYLHGDNETRGKKTAA 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU3_ECTSI2.540e-1977.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS52_9PHAE2.460e-1770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..69
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9062contigS-firma_M_contig9062:710..4184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9062.20002.1mRNA_S-firma_M_contig9062.20002.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9062 709..4184 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9062.20002.1 ID=prot_S-firma_M_contig9062.20002.1|Name=mRNA_S-firma_M_contig9062.20002.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=158bp
GAARKPAPTPPPRLQPPTPPAAAAGSSSGVESSNSGSMPGEAVVLEPGSD
AELAVLVAAAAAAVVAFLRETQQLHRRARGSEKLGDNLEAMANNLRRVSA
LQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGDRGDHHRACAA
GTGTSAGK
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