mRNA_S-firma_M_contig9062.20002.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9062.20002.1
Unique NamemRNA_S-firma_M_contig9062.20002.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.540e-19
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  244 EKLGDNLEAMANNLRRVSALQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGD 420
            EKLG NL  MA++LRRVSALQ +FG FTSLKTL+ PRGRACWN M EGLV LEEYLHGD
Sbjct: 1405 EKLG-NLATMASDLRRVSALQTEFGAFTSLKTLNNPRGRACWNTMREGLVTLEEYLHGD 1462
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BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.460e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  271 MANNLRRVSALQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGDRGDHHRACAA 450
            MA++LRRVSALQ +FG FTSLKTL +PRGRACWN M EGLV LEEYLHGD     +  AA
Sbjct:    1 MASDLRRVSALQTEFGAFTSLKTLSRPRGRACWNTMREGLVTLEEYLHGDNETRGKKTAA 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9062.20002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU3_ECTSI2.540e-1977.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS52_9PHAE2.460e-1770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9062contigS-firma_M_contig9062:709..4184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size477
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9062.20002.1prot_S-firma_M_contig9062.20002.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9062 710..4184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828730.4262414-CDS-S-firma_M_contig9062:709..9291622828730.4262414-CDS-S-firma_M_contig9062:709..929Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 710..929 -
1697105127.6210146-CDS-S-firma_M_contig9062:709..9291697105127.6210146-CDS-S-firma_M_contig9062:709..929Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 710..929 -
1622828730.4403574-CDS-S-firma_M_contig9062:1607..17901622828730.4403574-CDS-S-firma_M_contig9062:1607..1790Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 1608..1790 -
1697105127.631582-CDS-S-firma_M_contig9062:1607..17901697105127.631582-CDS-S-firma_M_contig9062:1607..1790Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 1608..1790 -
1622828730.4548216-CDS-S-firma_M_contig9062:4113..41841622828730.4548216-CDS-S-firma_M_contig9062:4113..4184Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 4114..4184 -
1697105127.6453323-CDS-S-firma_M_contig9062:4113..41841697105127.6453323-CDS-S-firma_M_contig9062:4113..4184Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9062 4114..4184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9062.20002.1

>prot_S-firma_M_contig9062.20002.1 ID=prot_S-firma_M_contig9062.20002.1|Name=mRNA_S-firma_M_contig9062.20002.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=158bp
GAARKPAPTPPPRLQPPTPPAAAAGSSSGVESSNSGSMPGEAVVLEPGSD
AELAVLVAAAAAAVVAFLRETQQLHRRARGSEKLGDNLEAMANNLRRVSA
LQADFGVFTSLKTLDQPRGRACWNMMTEGLVALEEYLHGDRGDHHRACAA
GTGTSAGK
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mRNA from alignment at S-firma_M_contig9062:709..4184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9062.20002.1 ID=mRNA_S-firma_M_contig9062.20002.1|Name=mRNA_S-firma_M_contig9062.20002.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3476bp|location=Sequence derived from alignment at S-firma_M_contig9062:709..4184- (Sphaerotrichia firma Sfir_13m male)
GGGGCCGCGCGAAAACCAGCCCCAACTCCTCCTCCGCGGCTTCAGCCGCC
CACACCGCCGGCGGCGGCGGCGCGGGGACGGGCACCGGCGCGTCGGCGGC
GGTGGCGGCCGGCGGCGGCGGCGGCGGCCTAATGACGGAGGCTAGAGCGG
TGGCCGTTGCCCGGTGCATGTCGGCCGGGGAGGGGTGCCGGTCCGAGCTG
CGGTCGAAGGCGGTGCTGGCGCTGGCGAACGCTGCGTCTTTCCCTTTCTC
GGAGGGATTGAGGGACCTCGTCCAGGTACGACTGTGAGAGCAAGGGGGAC
GGGGGGAAGGGGGAGGGTGAAGGAGAGGACGGGGTCACGGCGGACGGGCG
CGCGGGCGTGTGGTTGGATGGGTGGATGGATGTCGGTGCGTTGTTTCGAT
GGCACGGCAGTGTTGCATGGTGGTGGTGGTGGCTGCACAGGAGCGGCTGA
GATAGCAGGCGTAGTAGAAGAGGTAGCAGTGGTGCTGGTGCTCGAGCTTG
ATGTGGTTGCACAGGAGTGGTTCGCGAGGCCTGTTGGCTGCGCAGTTGCC
AGCGGTTCGCGACAAGCCTGCTGCAAGAGGACGAGAGAAGTGAAGAAGCA
GCGTGCCACCGCCGTGTTGCTCACGTCATCTTTCAAGTTTTTTCCGGGAA
GGGTCGGGTGGCTCAGCCCGGCAACTGTACCTAGTTTTTTTTTTTAACGC
GAACGCCGCGACGGATCCATGTCAAACGAGCTGCACGCACAACCTGTGAC
ACGCGTACAAATGTTTGTGTTTTCCTCTTGCTTGTTGGCTTCGGTTTCCT
CAGGAGGCGCTGACGTGGGGGGGTGCCCTGGACGAGGAGCTGCGGCGCGC
GGCCACCACCCTAGCCCTGTCTCAGATCGTGCAGCGGTACCACGTGACGG
GGTTCAACCTCGTCGACGCGCACCGCGCAACGCGCCTTCTGAGGTGAGGT
AAAGGTTGGTAAGAACGCCCGCTCGTGGTTGGTGTGTGTGTGTGTGTGTG
TGTGTGTTTTGTCGCTTTGGGTGGGGGTTGTAGTTTGTACCGAAGGTTTG
GCGGGGGAGGTCTCTATCCCGTCGTGTGTCCGCTTGTCGTTGGGCGGACT
GGTGACCTTGGTCCTCCCCCCCCCCCCCTTCATTTGTTTCCCTCCGAATG
ATCCCGCCCCCTTCGCCTCTTCGCGTTTTCCCTTTCTTTCATCTCTCGAG
CCCTCGACACTGCCCACTCTGTTGTATCTCCTCTGTCACTCACTCTCGCT
GCCCACCACTCTGCTACGGAGTATTTTTTTATTGTTCTCTTCATGGGCCC
ACTCAATCCCCCCCACCCGTCTCCCCATACCCCAATACCTCTGCCTAAAT
TGCCTCGGACCAGGCACGTTTTGGCGCAGGTGCGGTGTCCGACAGCCTTG
GACGACGGCCTACAGGTACGTGCGTGCACGCGTTTTTTTCGTTATTTTTT
TTTGGTGCGCCAGTGATGTGCTTGTAGGGAAAACCGAAATAGTTTCTTCC
GAGCCCTGGGCCAACTCAGATGCGACGCCAAGGAACAAGGCTGCCATCTG
CCATCTGTAACGTCTCCCGCGTACCTCGGAGAAGGCCCACAAAGTACCCA
GGCGCGTGTGCAACAACAGCACTTTGCTGGATCCTCCTCATCGCCCCAAC
CCTCCCACACCCACACACCCGCGCCCGAACCGAACCGAACCGAACCGAAC
CGAACCGAACCGAACCGAACCGAACCGAACCGAACCGAACCGAAAAAAAC
AGATAGCCAGCGCGTACAGCCACCTGAGCGAGCGTGACGTCTACGTGGAG
TTCCTGGAGAACCTCGCCGGGTCTTACCCCGTCGTCCAAGCCCCCGGCGG
TGGCGGTGGCGGTGGCGGTGAAAGCGGTGGTGGTCGCCAGCTGGCGGCGG
ACCTGACGACGCACCGGGGGCGTGTCGCCGATGTGCTCCGCCGGCTGCCC
GCGGGGGATGCCAGGTGCGGGAGGGATGGTGTGTGTATGGGCGGGTGTGC
GGGTGGGTGGGTGTGCGGTTTTGTGCAGTGTGGATCGGACTCGATTTTCT
GCGTACTGCGCGTGCCTTTTTCTTCTTCCCGATGTGCTGTATCTCTCCCT
CTCTCCAAATTGTTGCGTCTGATGTTTGTTGCTGTTGTTGTATTTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGCCCTGCGAAGGCGGGTG
GCGGAGGAGGTCCTCCTGTACCTGGTCCGGCTGCTCGAAGACCTCGAGCT
CGACGCCGTCACCGCCGGCCTGAACCCCGGACACCTGTGGGGGTGCAAGG
TCGTCGACGCCGCAACCGCGGCCCCCGCCCCCACGGCGGGGATAAGAAGC
GGCACCGACAGCCTCGACAGCACCCCCGCCGCCGGCGGTGGCAGTGGCAG
TAGCAGCGGTGTGGAAAGCAGCAACAGCGGCAGCATGCCGGGGGAAGCGG
TCGTTCTTGAGCCCGGGTCCGACGCGGAGCTGGCGGTTCTGGTGGCCGCG
GCCGCCGCCGCCGTGGTGGCCTTCCTGAGGGAGACGCAGCAGCTGCACCG
CAGGGCGCGCGGGTCGGAGAAGCTCGGGTGAGTGGGCGTGTGAAGTGTGT
GTGGTCGGAGAGAGGTGTCGTACAACGGGCGGGGTGGCGGAGAGACATTT
GGTGTGGAGAAGACAGGGGCGGGCTGCGGCGATCCGTTGAGGCCTCCAAA
GGTTGGCCGGAGGATGCTTGCGGTGGTGATGGCGGTGGTGGTGGTGGTGG
TGAATGTGGTCATCGCCGACGCTTCTTTGTCGGCAATGGTAAGCGGTTTC
GCTTGTAGACAGTCTCATCTCCGGCCAGACATGGGCGGGGCGAAAGGGAG
AAGACTGAGTTTTTCTTTCGTTTTTCGGTGAACCCCGGGATGTGCTGTCC
ATGTTATGCAATATTTTTGCGGCTTATGTGCGATCTAGGGAACGGGTCTA
TCGCACCGAAGGCGTGGGCCTGGGTCTGGGCCTGGGCCGCCTTAGCCTTC
GCCTTCCCGTTCGAACAGCAGTTTCTGCCACGTGCGCCGCAGAGATAGAT
GGTTTTCGTGCACGCGTCGGACCCCCCCCCGCCCTCCTTGTGTGGCCGTG
GATGGAAAAGGCACCCCGGCCCGTTTCGCAACGTTATCTCTTGTCGGGGG
CCCAGCTCTAAATCGCCAACACCGAACCATCGTTGTTTTTCATGTCTTCT
TCTCGTACCTTGCGTGCGCGTCGTGCTTTTATGCTTGAAACACACACACA
CACAGCGACAACCTCGAGGCGATGGCCAACAACCTTCGGAGGGTGTCGGC
CCTGCAGGCGGACTTCGGCGTCTTCACGTCCCTCAAGACGCTCGACCAGC
CCCGCGGCCGCGCGTGCTGGAACATGATGACGGAGGGCCTCGTGGCGCTC
GAGGAGTACCTCCACGGGGACCGCGGCGACCACCACCGGGCGTGCGCTGC
CGGCACCGGCACCTCCGCCGGCAAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9062:709..4184-

>mRNA_S-firma_M_contig9062.20002.1 ID=mRNA_S-firma_M_contig9062.20002.1|Name=mRNA_S-firma_M_contig9062.20002.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=948bp|location=Sequence derived from alignment at S-firma_M_contig9062:709..4184- (Sphaerotrichia firma Sfir_13m male)
GGGGCCGCGCGAAAACCAGCCCCAACTCCTCCTCCGCGGCTTCAGCCGCC
CACACCGCCGGCGGCGGCGGCGGGGCCGCGCGAAAACCAGCCCCAACTCC
TCCTCCGCGGCTTCAGCCGCCCACACCGCCGGCGGCGGCGGCTGGCAGTA
GCAGCGGTGTGGAAAGCAGCAACAGCGGCAGCATGCCGGGGGAAGCGGTC
GTTCTTGAGCCCGGGTCCGACGCGGAGCTGGCGGTTCTGGTGGCCGCGGC
CGCCGCCGCCGTGGTGGCCTTCCTGAGGGAGACGCAGCAGCTGCACCGCA
GGGCGCGCGGGTCGGAGAAGCTCGGTGGCAGTAGCAGCGGTGTGGAAAGC
AGCAACAGCGGCAGCATGCCGGGGGAAGCGGTCGTTCTTGAGCCCGGGTC
CGACGCGGAGCTGGCGGTTCTGGTGGCCGCGGCCGCCGCCGCCGTGGTGG
CCTTCCTGAGGGAGACGCAGCAGCTGCACCGCAGGGCGCGCGGGTCGGAG
AAGCTCGGCGACAACCTCGAGGCGATGGCCAACAACCTTCGGAGGGTGTC
GGCCCTGCAGGCGGACTTCGGCGTCTTCACGTCCCTCAAGACGCTCGACC
AGCCCCGCGGCCGCGCGTGCTGGAACATGATGACGGAGGGCCTCGTGGCG
CTCGAGGAGTACCTCCACGGGGACCGCGGCGACCACCACCGGGCGTGCGC
TGCCGGCACCGGCACCTCCGCCGGCAAGCGACAACCTCGAGGCGATGGCC
AACAACCTTCGGAGGGTGTCGGCCCTGCAGGCGGACTTCGGCGTCTTCAC
GTCCCTCAAGACGCTCGACCAGCCCCGCGGCCGCGCGTGCTGGAACATGA
TGACGGAGGGCCTCGTGGCGCTCGAGGAGTACCTCCACGGGGACCGCGGC
GACCACCACCGGGCGTGCGCTGCCGGCACCGGCACCTCCGCCGGCAAG
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