prot_S-firma_M_contig871.19578.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig871.19578.1
Unique Nameprot_S-firma_M_contig871.19578.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length129
Homology
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BLAST of mRNA_S-firma_M_contig871.19578.1 vs. uniprot
Match: D7G3I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-15
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0 
Query:    6 GATRAKPDAAGVAAFLTPCLVLAATLATALRQLGLPVGGLSFTVLLYLVLDFLSFRFGRQQPALTR 71
            G    K    GV+AFLTP LVLAAT+ATALRQLG+PVGGLSF V LYLVLD L+FRF R QP L R
Sbjct:    2 GTQTPKRRPVGVSAFLTPSLVLAATVATALRQLGVPVGGLSFAVWLYLVLDLLAFRFRRAQPGLER 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig871.19578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3I8_ECTSI1.790e-1569.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..129
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 40..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig871contigS-firma_M_contig871:7721..9002 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig871.19578.1mRNA_S-firma_M_contig871.19578.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig871 7721..9186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig871.19578.1 ID=prot_S-firma_M_contig871.19578.1|Name=mRNA_S-firma_M_contig871.19578.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=129bp
MGCTGGATRAKPDAAGVAAFLTPCLVLAATLATALRQLGLPVGGLSFTVL
LYLVLDFLSFRFGRQQPALTRLRCSFSSTAEAAAISAAGGAGIDATGKAG
KVAQPQQAAGGGASAAARSSGQAAGAATT
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