mRNA_S-firma_M_contig871.19578.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig871.19578.1
Unique NamemRNA_S-firma_M_contig871.19578.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig871.19578.1 vs. uniprot
Match: D7G3I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-14
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:  230 GVAAFLTPCLVLAATLATALRQLGLPVGGLSFTVLLYLVLDFLSFRFGRQQPALTR 397
            GV+AFLTP LVLAAT+ATALRQLG+PVGGLSF V LYLVLD L+FRF R QP L R
Sbjct:   12 GVSAFLTPSLVLAATVATALRQLGVPVGGLSFAVWLYLVLDLLAFRFRRAQPGLER 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig871.19578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3I8_ECTSI1.720e-1478.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig871contigS-firma_M_contig871:7721..9186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size573
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig871.19578.1prot_S-firma_M_contig871.19578.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig871 7721..9002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828687.0592234-CDS-S-firma_M_contig871:7720..79251622828687.0592234-CDS-S-firma_M_contig871:7720..7925Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig871 7721..7925 -
1697105101.1532083-CDS-S-firma_M_contig871:7720..79251697105101.1532083-CDS-S-firma_M_contig871:7720..7925Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig871 7721..7925 -
1622828687.0761318-CDS-S-firma_M_contig871:8820..90021622828687.0761318-CDS-S-firma_M_contig871:8820..9002Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig871 8821..9002 -
1697105101.1618297-CDS-S-firma_M_contig871:8820..90021697105101.1618297-CDS-S-firma_M_contig871:8820..9002Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig871 8821..9002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828687.089516-UTR-S-firma_M_contig871:9002..91861622828687.089516-UTR-S-firma_M_contig871:9002..9186Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig871 9003..9186 -
1697105101.170393-UTR-S-firma_M_contig871:9002..91861697105101.170393-UTR-S-firma_M_contig871:9002..9186Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig871 9003..9186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig871.19578.1

>prot_S-firma_M_contig871.19578.1 ID=prot_S-firma_M_contig871.19578.1|Name=mRNA_S-firma_M_contig871.19578.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=129bp
MGCTGGATRAKPDAAGVAAFLTPCLVLAATLATALRQLGLPVGGLSFTVL
LYLVLDFLSFRFGRQQPALTRLRCSFSSTAEAAAISAAGGAGIDATGKAG
KVAQPQQAAGGGASAAARSSGQAAGAATT
back to top

mRNA from alignment at S-firma_M_contig871:7721..9186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig871.19578.1 ID=mRNA_S-firma_M_contig871.19578.1|Name=mRNA_S-firma_M_contig871.19578.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1466bp|location=Sequence derived from alignment at S-firma_M_contig871:7721..9186- (Sphaerotrichia firma Sfir_13m male)
ACGCAGGGCGAGCTCCCTCTAGGCAGGCAGAGGGCAGAGGGACCACCCTC
GGTCCCAGCTTACACTGAGAGGGCGTGTACGAGACGCTTGCGTGGGGAGC
TCAACTTGTTGGAACCACTTCGTAGGGTGAGAGACCTGAGTCGTGGCCCA
GCTTGGTGTCTCGACTGACCTACACGAAAGAACCATGGGTTGCACCGGCG
GCGCAACACGAGCCAAGCCTGATGCCGCCGGCGTCGCGGCGTTCTTGACT
CCGTGCCTGGTTCTGGCTGCCACCCTGGCAACAGCACTCAGGCAACTGGG
GCTACCGGTCGGAGGGTTGTCGTTTACGGTGTTGCTGTATCTCGTGCTGG
ATTTCTTGTCTTTCAGGTGAGAAAGGGCGACAACTGCGTGACATCCCGAA
CGGCATTGTCGTTGTCGCACCATTGGCAACCCTCCTGTTCTCTAGCCCCG
AGTCGAGACTTCGCTGTCTGCTACTCGTAAATATCGAGTGGGGCCCTGTT
GCGCTGCTTTGAGCAGCGCGCAGCTGTTGCTGGTTCGATTTTGCTGCTCT
GTAGCTCGCCCAGGATAAAATTGGGTCTCTCCGCCCCAGGCATACTTCTG
GAGACTACAACATGTCTCCTTCCTGCTGCTGTGACTGACATGTGGTGCTG
TCGTGCTCTCTCGCCAGTGCACTTTCGAGCGATTAATGGAAGCAATAGAA
GCGACCGTGCGGGTGCTGCCGAATCTGGTGTAGAAGAGCAATTGAAGAAT
TTTGAGGGTGCCAGTACTCTGTCTTGTCGCCGATCACAACAGAAGTCAAA
CACTGGCCGGTGTTGGCGCCACAAATGTGGGCACACCAGCGAAGTGCACA
TAATGTGTTCTATTGTTCACTGTAGTTCGGAGACAAGCTCGTGCGCACAT
ACTCTTTGCATCCTCCCAGCACGCCACTGGGTCACATCAATCAGTCGAAA
CAACGGCGGACAAACCGAGGCTACACACAGAGAGTCCGAGCAGTACTACC
GCGCAGTTGCATGGGAGGCCTTTGTTGATGAACCTGCTGCTGTAACCGTG
AATCGAGAGGCCGGACATCCATGTCTACTCCTCACCCCACCAGTCTAGAT
CACTGACACGGTACAGACTAGCGGGTGCGTTTCCGGCGGCCACCCCAAAT
CTTTGCACGGTCCATCTCCCACAGTACTACCTGCTGTACCACACAGCCAA
GAGGCGTGTGCTCCATTTGCCGACACGAAAACACCGCCCCCCCCCCAACA
CTTCCCCGCAGGTTCGGACGCCAGCAACCAGCGTTGACACGGCTGCGATG
TTCCTTCTCGAGCACCGCCGAAGCGGCAGCCATCAGCGCCGCCGGTGGGG
CCGGCATCGATGCGACGGGGAAGGCGGGGAAGGTGGCGCAGCCCCAGCAG
GCGGCCGGCGGTGGTGCGTCGGCGGCAGCGCGGAGCAGCGGGCAGGCCGC
GGGGGCGGCGACGACA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig871:7721..9186-

>mRNA_S-firma_M_contig871.19578.1 ID=mRNA_S-firma_M_contig871.19578.1|Name=mRNA_S-firma_M_contig871.19578.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=774bp|location=Sequence derived from alignment at S-firma_M_contig871:7721..9186- (Sphaerotrichia firma Sfir_13m male)
ATGGGTTGCACCGGCGGCGCAACACGAGCCAAGCCTGATGCCGCCGGCGT
CGCGGCGTTCTTGACTCCGTGCCTGGTTCTGGCTGCCACCCTGGCAACAG
CACTCAGGCAACTGGGGCTACCGGTCGGAGGGTTGTCGTTTACGGTGTTG
CTGTATCTCGTGCTGGATTTCTTGTCTTTCAGATGGGTTGCACCGGCGGC
GCAACACGAGCCAAGCCTGATGCCGCCGGCGTCGCGGCGTTCTTGACTCC
GTGCCTGGTTCTGGCTGCCACCCTGGCAACAGCACTCAGGCAACTGGGGC
TACCGGTCGGAGGGTTGTCGTTTACGGTGTTGCTGTATCTCGTGCTGGAT
TTCTTGTCTTTCAGGTTCGGACGCCAGCAACCAGCGTTGACACGGCTGCG
ATGTTCCTTCTCGAGCACCGCCGAAGCGGCAGCCATCAGCGCCGCCGGTG
GGGCCGGCATCGATGCGACGGGGAAGGCGGGGAAGGTGGCGCAGCCCCAG
CAGGCGGCCGGCGGTGGTGCGTCGGCGGCAGCGCGGAGCAGCGGGCAGGC
CGCGGGGGCGGCGACGACAGTTCGGACGCCAGCAACCAGCGTTGACACGG
CTGCGATGTTCCTTCTCGAGCACCGCCGAAGCGGCAGCCATCAGCGCCGC
CGGTGGGGCCGGCATCGATGCGACGGGGAAGGCGGGGAAGGTGGCGCAGC
CCCAGCAGGCGGCCGGCGGTGGTGCGTCGGCGGCAGCGCGGAGCAGCGGG
CAGGCCGCGGGGGCGGCGACGACA
back to top