mRNA_S-firma_M_contig9882.20868.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9882.20868.1
Unique NamemRNA_S-firma_M_contig9882.20868.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9882.20868.1 vs. uniprot
Match: D8LI42_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI42_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.920e-26
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   22 GQAATVRNADAVMVVLGVLPYLSEEIAWAALGALNQVVRAGGFAEAEALVAAGVARKAADVLAKALHAQT 231
            GQ A VRNADAVMVVLGVLPYLSE+ AWAALGALNQVVRAGGFAEAEALVAAGV R AADVLAKALH++T
Sbjct: 1330 GQHAPVRNADAVMVVLGVLPYLSEDTAWAALGALNQVVRAGGFAEAEALVAAGVVRMAADVLAKALHSRT 1399
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BLAST of mRNA_S-firma_M_contig9882.20868.1 vs. uniprot
Match: A0A6H5KQH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.640e-26
Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   22 GQAATVRNADAVMVVLGVLPYLSEEIAWAALGALNQVVRAGGFAEAEALVAAGVARKAADVLAKALHAQT-------------TSGGRRGSIGGTDPTAGA 285
            GQ A VRNADAVMVVLGVLPYLSE+IAWAALGALNQVVRAG FAEAEALVAAGV R AADVLAKALH++T             ++GG R    GT   AGA
Sbjct: 1384 GQHAPVRNADAVMVVLGVLPYLSEDIAWAALGALNQVVRAGRFAEAEALVAAGVVRMAADVLAKALHSRTVRANNKRRPDSRTSTGGARDDATGTPWDAGA 1484
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9882.20868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI42_ECTSI1.920e-2688.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH9_9PHAE2.640e-2669.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9882contigS-firma_M_contig9882:1089..1489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue9.2e-23
Seed eggNOG ortholog2880.D8LI42
EggNOG OGs2E8XM@1,2SFC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828828.0022697-CDS-S-firma_M_contig9882:1088..14871622828828.0022697-CDS-S-firma_M_contig9882:1088..1487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9882 1089..1487 +
1697105187.1968887-CDS-S-firma_M_contig9882:1088..14871697105187.1968887-CDS-S-firma_M_contig9882:1088..1487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9882 1089..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9882.20868.1prot_S-firma_M_contig9882.20868.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9882 1089..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9882.20868.1

>prot_S-firma_M_contig9882.20868.1 ID=prot_S-firma_M_contig9882.20868.1|Name=mRNA_S-firma_M_contig9882.20868.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=133bp
GGGANDDGQAATVRNADAVMVVLGVLPYLSEEIAWAALGALNQVVRAGGF
AEAEALVAAGVARKAADVLAKALHAQTTSGGRRGSIGGTDPTAGASRNLG
VSDSAVPGEEEGGGGGAASAAIVRSGRAFRRPS
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mRNA from alignment at S-firma_M_contig9882:1089..1489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9882.20868.1 ID=mRNA_S-firma_M_contig9882.20868.1|Name=mRNA_S-firma_M_contig9882.20868.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=401bp|location=Sequence derived from alignment at S-firma_M_contig9882:1089..1489+ (Sphaerotrichia firma Sfir_13m male)
GGAGGAGGAGCAAACGACGACGGCCAGGCTGCCACGGTCCGGAACGCGGA
CGCCGTCATGGTCGTCCTCGGCGTGCTGCCATACCTGAGCGAGGAGATCG
CGTGGGCCGCCCTGGGGGCGCTGAACCAGGTGGTCCGAGCGGGCGGATTC
GCGGAGGCGGAGGCTCTGGTGGCTGCCGGTGTTGCGAGGAAGGCCGCGGA
CGTCCTGGCGAAGGCTCTGCACGCGCAGACAACTTCCGGGGGCCGCCGCG
GCAGCATCGGGGGAACTGACCCGACAGCGGGCGCAAGTCGAAACCTGGGC
GTCTCGGACAGCGCCGTTCCCGGGGAGGAAGAGGGCGGCGGCGGCGGTGC
AGCGTCCGCGGCCATTGTTCGGAGCGGCCGTGCCTTCAGGCGGCCGTCTC
A
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Coding sequence (CDS) from alignment at S-firma_M_contig9882:1089..1489+

>mRNA_S-firma_M_contig9882.20868.1 ID=mRNA_S-firma_M_contig9882.20868.1|Name=mRNA_S-firma_M_contig9882.20868.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=798bp|location=Sequence derived from alignment at S-firma_M_contig9882:1089..1489+ (Sphaerotrichia firma Sfir_13m male)
GGAGGAGGAGCAAACGACGACGGCCAGGCTGCCACGGTCCGGAACGCGGA
CGCCGTCATGGTCGTCCTCGGCGTGCTGCCATACCTGAGCGAGGAGATCG
CGTGGGCCGCCCTGGGGGCGCTGAACCAGGTGGTCCGAGCGGGCGGATTC
GCGGAGGCGGAGGCTCTGGTGGCTGCCGGTGTTGCGAGGAAGGCCGCGGA
CGTCCTGGCGAAGGCTCTGCACGCGCAGACAACTTCCGGGGGCCGCCGCG
GCAGCATCGGGGGAACTGACCCGACAGCGGGCGCAAGTCGAAACCTGGGC
GTCTCGGACAGCGCCGTTCCCGGGGAGGAAGAGGGCGGCGGCGGCGGTGC
AGCGTCCGCGGCCATTGTTCGGAGCGGCCGTGCCTTCAGGCGGCCGTCTG
GAGGAGGAGCAAACGACGACGGCCAGGCTGCCACGGTCCGGAACGCGGAC
GCCGTCATGGTCGTCCTCGGCGTGCTGCCATACCTGAGCGAGGAGATCGC
GTGGGCCGCCCTGGGGGCGCTGAACCAGGTGGTCCGAGCGGGCGGATTCG
CGGAGGCGGAGGCTCTGGTGGCTGCCGGTGTTGCGAGGAAGGCCGCGGAC
GTCCTGGCGAAGGCTCTGCACGCGCAGACAACTTCCGGGGGCCGCCGCGG
CAGCATCGGGGGAACTGACCCGACAGCGGGCGCAAGTCGAAACCTGGGCG
TCTCGGACAGCGCCGTTCCCGGGGAGGAAGAGGGCGGCGGCGGCGGTGCA
GCGTCCGCGGCCATTGTTCGGAGCGGCCGTGCCTTCAGGCGGCCGTCT
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