mRNA_S-firma_M_contig9781.20768.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9781.20768.1
Unique NamemRNA_S-firma_M_contig9781.20768.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9781.20768.1 vs. uniprot
Match: A0A6H5KKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-17
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 HVTASLAGVVSAWMAGAAXXXXXXXXXXXXXLRSAAAADLESHVKALAVSKTKEVTGTGA---GGAWTPGMTTIALSGIRAWDEKWTEVFP 264
            HVTA++   V  WMA AA             +RS  AADLE+H KALAVSKTKEVTG G    GG WT GMT IAL+GI AW +KW E++P
Sbjct:  469 HVTAAVTENVREWMAAAAAEAAAAAMSNG--VRSVTAADLEAHAKALAVSKTKEVTGGGGRXGGGVWTAGMTRIALAGIEAWKDKWREIYP 557
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BLAST of mRNA_S-firma_M_contig9781.20768.1 vs. uniprot
Match: D7G140_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G140_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.660e-17
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 HVTASLAGVVSAWMAGAAXXXXXXXXXXXXXLRSAAAADLESHVKALAVSKTKEVTG---TGAGGAWTPGMTTIALSGIRAWDEKWTEVFP 264
            HVTA++   V  WMA AA             +RS  AADLE+H KALAVSKTKEVTG    G GG W+ GMT IAL+G+ AW +KW EV+P
Sbjct:  451 HVTAAVTENVREWMAAAAAEAAAAAMSNG--VRSVTAADLEAHAKALAVSKTKEVTGGGGRGGGGVWSAGMTRIALAGMEAWHDKWREVYP 539
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9781.20768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKG2_9PHAE1.410e-1754.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G140_ECTSI6.660e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9781contigS-firma_M_contig9781:3516..3815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003250.1
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828815.6118689-CDS-S-firma_M_contig9781:3515..38151622828815.6118689-CDS-S-firma_M_contig9781:3515..3815Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9781 3516..3815 -
1697105179.5927737-CDS-S-firma_M_contig9781:3515..38151697105179.5927737-CDS-S-firma_M_contig9781:3515..3815Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9781 3516..3815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9781.20768.1prot_S-firma_M_contig9781.20768.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9781 3516..3815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9781.20768.1

>prot_S-firma_M_contig9781.20768.1 ID=prot_S-firma_M_contig9781.20768.1|Name=mRNA_S-firma_M_contig9781.20768.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=100bp
HVTASLAGVVSAWMAGAAAQAAAAVAASGGGLRSAAAADLESHVKALAVS
KTKEVTGTGAGGAWTPGMTTIALSGIRAWDEKWTEVFPGSGGGGDAGDSG
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mRNA from alignment at S-firma_M_contig9781:3516..3815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9781.20768.1 ID=mRNA_S-firma_M_contig9781.20768.1|Name=mRNA_S-firma_M_contig9781.20768.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=300bp|location=Sequence derived from alignment at S-firma_M_contig9781:3516..3815- (Sphaerotrichia firma Sfir_13m male)
CACGTCACGGCGTCCCTCGCCGGCGTCGTGAGCGCGTGGATGGCCGGGGC
GGCGGCCCAGGCGGCAGCGGCGGTGGCCGCGAGCGGCGGCGGGCTCCGGA
GCGCGGCGGCGGCGGATCTGGAGTCTCACGTCAAGGCCCTCGCCGTGTCC
AAGACGAAGGAGGTCACGGGGACCGGGGCGGGAGGCGCGTGGACGCCCGG
GATGACGACGATCGCGCTCTCCGGGATCAGGGCGTGGGACGAGAAGTGGA
CAGAGGTTTTCCCCGGGTCCGGCGGTGGGGGTGACGCCGGCGACTCCGGT
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Coding sequence (CDS) from alignment at S-firma_M_contig9781:3516..3815-

>mRNA_S-firma_M_contig9781.20768.1 ID=mRNA_S-firma_M_contig9781.20768.1|Name=mRNA_S-firma_M_contig9781.20768.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=600bp|location=Sequence derived from alignment at S-firma_M_contig9781:3516..3815- (Sphaerotrichia firma Sfir_13m male)
CACGTCACGGCGTCCCTCGCCGGCGTCGTGAGCGCGTGGATGGCCGGGGC
GGCGGCCCAGGCGGCAGCGGCGGTGGCCGCGAGCGGCGGCGGGCTCCGGA
GCGCGGCGGCGGCGGATCTGGAGTCTCACGTCAAGGCCCTCGCCGTGTCC
AAGACGAAGGAGGTCACGGGGACCGGGGCGGGAGGCGCGTGGACGCCCGG
GATGACGACGATCGCGCTCTCCGGGATCAGGGCGTGGGACGAGAAGTGGA
CAGAGGTTTTCCCCGGGTCCGGCGGTGGGGGTGACGCCGGCGACTCCGGT
CACGTCACGGCGTCCCTCGCCGGCGTCGTGAGCGCGTGGATGGCCGGGGC
GGCGGCCCAGGCGGCAGCGGCGGTGGCCGCGAGCGGCGGCGGGCTCCGGA
GCGCGGCGGCGGCGGATCTGGAGTCTCACGTCAAGGCCCTCGCCGTGTCC
AAGACGAAGGAGGTCACGGGGACCGGGGCGGGAGGCGCGTGGACGCCCGG
GATGACGACGATCGCGCTCTCCGGGATCAGGGCGTGGGACGAGAAGTGGA
CAGAGGTTTTCCCCGGGTCCGGCGGTGGGGGTGACGCCGGCGACTCCGGT
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