mRNA_S-firma_M_contig976.20750.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig976.20750.1
Unique NamemRNA_S-firma_M_contig976.20750.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig976.20750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig976contigS-firma_M_contig976:25193..25759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size567
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig976.20750.1prot_S-firma_M_contig976.20750.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig976 25347..25661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828813.1785936-UTR-S-firma_M_contig976:25192..253461622828813.1785936-UTR-S-firma_M_contig976:25192..25346Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig976 25193..25346 +
1697105178.0566316-UTR-S-firma_M_contig976:25192..253461697105178.0566316-UTR-S-firma_M_contig976:25192..25346Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig976 25193..25346 +
1622828813.2011948-UTR-S-firma_M_contig976:25661..257591622828813.2011948-UTR-S-firma_M_contig976:25661..25759Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig976 25662..25759 +
1697105178.0748076-UTR-S-firma_M_contig976:25661..257591697105178.0748076-UTR-S-firma_M_contig976:25661..25759Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig976 25662..25759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828813.1898806-CDS-S-firma_M_contig976:25346..256611622828813.1898806-CDS-S-firma_M_contig976:25346..25661Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 25347..25661 +
1697105178.0658488-CDS-S-firma_M_contig976:25346..256611697105178.0658488-CDS-S-firma_M_contig976:25346..25661Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 25347..25661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig976.20750.1

>prot_S-firma_M_contig976.20750.1 ID=prot_S-firma_M_contig976.20750.1|Name=mRNA_S-firma_M_contig976.20750.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=105bp
MLASRFVVGGVGMWTCVHPPVLAWPVYCCTAVLLLASFCRFGPCWMSCHG
VESSVSSTIDVVFGIRRQPKMRARFRCALLHAVFCWFVLYYVSPGCLNPT
YTVR*
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mRNA from alignment at S-firma_M_contig976:25193..25759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig976.20750.1 ID=mRNA_S-firma_M_contig976.20750.1|Name=mRNA_S-firma_M_contig976.20750.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=567bp|location=Sequence derived from alignment at S-firma_M_contig976:25193..25759+ (Sphaerotrichia firma Sfir_13m male)
ACAATGGCGACGGGGGCGAGGGAGGTATGTGCGTCGAGTGCAGTGCTGTG
GGGAGTACTTCGGATGAAAAACTACCTGCAGACAACAGCAGTGCCACGCA
GCAATCGCGGCCATCGTGTTACGTTGTCGGAGCTCAAAGAACGATAAGCC
GTTGATGCTGGCGAGCCGCTTTGTCGTTGGCGGCGTCGGCATGTGGACGT
GTGTGCATCCGCCTGTCTTGGCTTGGCCCGTGTACTGCTGTACTGCGGTA
CTACTGTTGGCCTCTTTTTGTCGTTTTGGGCCATGCTGGATGTCATGTCA
TGGTGTTGAGTCGAGTGTCAGTTCGACGATTGACGTTGTTTTTGGCATCC
GACGTCAGCCCAAAATGAGGGCCAGGTTTCGGTGTGCTCTCCTACATGCC
GTCTTCTGTTGGTTTGTGTTGTATTACGTCTCGCCAGGCTGCCTGAACCC
AACGTACACAGTACGGTAGACTACGTCCCCATATGTCAAAAGTGTACAAA
CTCCGAAGCGCGCAGCAGAGAAAAGGGTCTAATCATGCAGTCCAATCCAC
TTGAACGCTTTTGCGCC
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Coding sequence (CDS) from alignment at S-firma_M_contig976:25193..25759+

>mRNA_S-firma_M_contig976.20750.1 ID=mRNA_S-firma_M_contig976.20750.1|Name=mRNA_S-firma_M_contig976.20750.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_M_contig976:25193..25759+ (Sphaerotrichia firma Sfir_13m male)
ATGCTGGCGAGCCGCTTTGTCGTTGGCGGCGTCGGCATGTGGACGTGTGT
GCATCCGCCTGTCTTGGCTTGGCCCGTGTACTGCTGTACTGCGGTACTAC
TGTTGGCCTCTTTTTGTCGTTTTGGGCCATGCTGGATGTCATGTCATGGT
GTTGAGTCGAGTGTCAGTTCGACGATTGACGTTGTTTTTGGCATCCGACG
TCAGCCCAAAATGAGGGCCAGGTTTCGGTGTGCTCTCCTACATGCCGTCT
TCTGTTGGTTTGTGTTGTATTACGTCTCGCCAGGCTGCCTGAACCCAACG
TACACAGTACGGTAGATGCTGGCGAGCCGCTTTGTCGTTGGCGGCGTCGG
CATGTGGACGTGTGTGCATCCGCCTGTCTTGGCTTGGCCCGTGTACTGCT
GTACTGCGGTACTACTGTTGGCCTCTTTTTGTCGTTTTGGGCCATGCTGG
ATGTCATGTCATGGTGTTGAGTCGAGTGTCAGTTCGACGATTGACGTTGT
TTTTGGCATCCGACGTCAGCCCAAAATGAGGGCCAGGTTTCGGTGTGCTC
TCCTACATGCCGTCTTCTGTTGGTTTGTGTTGTATTACGTCTCGCCAGGC
TGCCTGAACCCAACGTACACAGTACGGTAG
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