mRNA_S-firma_M_contig976.20749.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig976.20749.1
Unique NamemRNA_S-firma_M_contig976.20749.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A6H5J746_9PHAE (UBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J746_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 1.110e-135
Identity = 188/250 (75.20%), Postives = 219/250 (87.60%), Query Frame = 1
Query:    1 YRVWSSTCPFVARSTMLGIGVSWLLSLFLPQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRGSFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANFVQRPGYIISGSAMGAAAYGTPLNNPADHPSNQRNDG 750
            YRVW+STCPF AR TM+GI  S+LLS FLPQLD+AL +    TI  FEVYRL+TTVFCSGGL+TVIFGLMSFN +GPNLERSLGSTGLLALM  LT +TN AFI +C +LV++G K   +++S GIWNL+IAL AVECMATPD PRRFFILPWDIPG+YYPLFLAC+   MRGS++DLFCA GIGYAYADGRL+R+KPSRS+LA+WESGC+ANFV+RPGYI+SG+AMGAAA+GTPLNNPADHPSNQR +G
Sbjct:   17 YRVWASTCPFTARCTMVGIVGSYLLSFFLPQLDLALSNSPFRTIESFEVYRLVTTVFCSGGLLTVIFGLMSFNSVGPNLERSLGSTGLLALMVTLTALTNLAFIALCYVLVIMGEKKYAFYSSKGIWNLLIALIAVECMATPDVPRRFFILPWDIPGKYYPLFLACLFSFMRGSWMDLFCAAGIGYAYADGRLDRLKPSRSKLASWESGCMANFVERPGYIVSGAAMGAAAFGTPLNNPADHPSNQRAEG 266          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A835Z2V1_9STRA (UBA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V1_9STRA)

HSP 1 Score: 194 bits (493), Expect = 6.120e-56
Identity = 105/240 (43.75%), Postives = 146/240 (60.83%), Query Frame = 1
Query:    1 YRVWSSTCPFVARSTMLGIGVSWLLSLFLPQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRGSFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANFVQRPGYIISGSAMGAAAYGTPLNNPA 720
            Y  W+ST PFV RS  +   V +LL +F+  LD+AL + + +TI   EVYR+ T        +T+IFG+M  +++GP +E SLGS  LLALMA+L V  N+AF+    L   LGN+ A    + G+WNL++ L  V+CM  PD PR+ F  P +IP +YYPL L  +  IM G  +D+  A+  GYA+A G+L+ +KPS SR+  WE+GCL NF  R GYI +           P+NNPA
Sbjct:   20 YNGWASTKPFVTRSMCILQVVLFLLGMFVD-LDLALNNSLHYTIYSLEVYRIFTASLWCTSFITLIFGVMVLSQMGPKMEYSLGSARLLALMAILDVAANSAFLLFGLLSTALGNRAAELSAAQGLWNLLMPLIVVDCMQMPDFPRKLFFFPCEIPSKYYPLALFALFSIMGGVRVDMALALATGYAFAFGKLDCLKPSISRVQGWENGCLRNFTSRQGYITATGTQQEPWQ--PVNNPA 256          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: UPI001C4C936D (rhomboid-like protein 15 isoform X3 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4C936D)

HSP 1 Score: 85.5 bits (210), Expect = 2.090e-15
Identity = 68/239 (28.45%), Postives = 113/239 (47.28%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSLFL--PQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSG----GIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRG--SFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANF-VQRPGYIISGSAMGAAAYG 699
            W ++ PF+    +   G+ +L+ L +          S  E  ISHF+VYR+ T+V   G L+ V+F +++   +G  LER +GS  LL LM +L  + N+ F  +  LLV     +   F       G   ++ A+  +E   +    R  F L +++P ++Y   L  +   +    SFL   C +  G+AY  G L  + P  S  ++ ES  + +F V+RP +I+     G   YG
Sbjct:   18 WWASVPFITSGIIFTCGIIYLVCLLVGYDSFSQICFSPFEI-ISHFQVYRMYTSVLFHGSLLHVLFNMLALVPLGTELERIMGSVRLLYLMLLLATI-NSIFHLIIALLVANNPLHPFPFLETECAIGFSGILFAMIVIETSLSGVQSRSVFGL-FNVPAKWYAWILLILFQFLASNVSFLGHLCGILSGFAYTSGLLNYLLPGPSFYSSIESSSILSFCVRRPRFIL---CTGGTTYG 250          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: UPI001C4AEC66 (rhomboid-like protein 15 isoform X1 n=6 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AEC66)

HSP 1 Score: 85.5 bits (210), Expect = 2.180e-15
Identity = 68/239 (28.45%), Postives = 113/239 (47.28%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSLFL--PQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSG----GIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRG--SFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANF-VQRPGYIISGSAMGAAAYG 699
            W ++ PF+    +   G+ +L+ L +          S  E  ISHF+VYR+ T+V   G L+ V+F +++   +G  LER +GS  LL LM +L  + N+ F  +  LLV     +   F       G   ++ A+  +E   +    R  F L +++P ++Y   L  +   +    SFL   C +  G+AY  G L  + P  S  ++ ES  + +F V+RP +I+     G   YG
Sbjct:   18 WWASVPFITSGIIFTCGIIYLVCLLVGYDSFSQICFSPFEI-ISHFQVYRMYTSVLFHGSLLHVLFNMLALVPLGTELERIMGSVRLLYLMLLLATI-NSIFHLIIALLVANNPLHPFPFLETECAIGFSGILFAMIVIETSLSGVQSRSVFGL-FNVPAKWYAWILLILFQFLASNVSFLGHLCGILSGFAYTSGLLNYLLPGPSFYSSIESSSILSFCVRRPRFIL---CTGGTTYG 250          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A482UV15_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UV15_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.650e-13
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  379 WNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRGS-FLDLFCAVGIGYAYADGRLERVKPSRSRLANWES 624
            W ++ AL  ++CM+TPDTPRR   +P+DIP +Y PL L  ++ ++ GS +     ++G+GYA   G ++R +PS   LA  E+
Sbjct:  193 WTVLFALLTLDCMSTPDTPRRLLCIPYDIPSKYLPLVLYALVCVLSGSLYTSYLISMGMGYAVCMGYMDRCRPSSQYLAGLEA 275          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A061EXY1_THECC (RHOMBOID-like protein 15 n=6 Tax=Malvaceae TaxID=3629 RepID=A0A061EXY1_THECC)

HSP 1 Score: 79.0 bits (193), Expect = 4.190e-13
Identity = 65/237 (27.43%), Postives = 112/237 (47.26%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSL-----------FLPQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLV----MLGNKYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRG--SFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGC-LANFVQRPGYII 666
            W    PF+  + ++  GV +L+ L           FLP          E  +SHF+VYR+ T++   G L+ V+F +++   +G  LER +GS  LL  M +L   +NA F  +  L+V     L +KY +   + G   ++ ++  +E   +    R  F L +++P ++Y   L  +  ++    S L   C +  G+AY  G    + P  S  +  ES   LA+ V+RP +I+
Sbjct:   18 WWDNIPFLTSAVVIVCGVIYLVCLLVGYDSFYEICFLP----------EALVSHFQVYRIYTSIIFHGSLLHVLFNMLALVPLGSELERIMGSIRLLY-MIILLATSNAIFHLIIALVVAHNPFLTDKYLMNECAIGFSGILFSMIVIETSLSGVQSRSVFGL-FNVPAKWYAFILLVVFQLLMSNVSLLGHLCGILSGFAYTYGLFNFLIPGPSFYSAIESSSWLASCVRRPKFIL 242          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A8J5M0A9_ZINOF (UBA domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5M0A9_ZINOF)

HSP 1 Score: 78.6 bits (192), Expect = 6.610e-13
Identity = 61/222 (27.48%), Postives = 105/222 (47.30%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSLFL--PQLDMALRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSG----GIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRG--SFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANFVQR 651
            W ++ PF+    +   G+ +L+ L +          S  E  ISHF+VYR+ T+V   G L+ V+F +++   +G  LER +GS  LL LM +L  + N+ F  +  LLV     +   F       G   ++ A+  +E   +    R  F L +++P ++Y   L  +   +    SFL   C +  G+AY +G L  + P  S  ++ ES  +   ++R
Sbjct:   18 WWASVPFITSGIIFTCGIIYLVCLLVGYDSFSQICFSPFEI-ISHFQVYRMYTSVLFHGSLLHVLFNMLALVPLGTELERIMGSVRLLYLMLLLATI-NSIFHLIIALLVANNPLHPFPFLETECAIGFSGILFAMIVIETSLSGVQSRSVFGL-FNVPAKWYAWILLILFQFLASNVSFLGHLCGILSGFAYTNGLLNYLLPGPSFYSSIESSSILASLER 236          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A7N2M416_QUELO (UBA domain-containing protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2M416_QUELO)

HSP 1 Score: 78.2 bits (191), Expect = 7.590e-13
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  130 ISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLV---------MLGNKYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYPLFLACMLGIMRG--SFLDLFCAVGIGYAYADGRLERVKPSRS-----RLANWESGCLANFVQRPGYII 666
            +SHF+VYR+ T++F  G L+ V+F +++   +G  LER +GS  LL  M +L   TNA F  +  LLV          L N+ A+ F SG ++++I+  T++        PRR     + +P ++YP  L  +  ++    S L   C +  G+AY  G    + P  S       ++W S C    V+RP +I+
Sbjct:   59 LSHFQVYRIYTSIFFHGSLLHVLFNMLALVPLGSELERIMGSVRLLY-MIILLATTNAIFHLLIALLVGHNPFHPFLYLMNECAIGF-SGILFSMIVIETSLS-----GEPRRSVFGLFHVPAQWYPWILLILFQLLASNVSLLGHLCGILSGFAYTYGIFNFLIPGASFYSAIEASSWLSSC----VRRPKFIL 242          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: A0A2P5B7Z7_PARAD (Peptidase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5B7Z7_PARAD)

HSP 1 Score: 78.2 bits (191), Expect = 7.590e-13
Identity = 62/233 (26.61%), Postives = 113/233 (48.50%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSLFLPQLDMA----LRSGIEFTISHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGNKYAVYFTSGGIWN--------LIIALTAVECMATPDTPRRFFILPWDIPGRYYP--LFLACMLGIMRGSFLDLFCAVGIGYAYADGRLERVKPSRSRLANWESGCLANFVQRPGYII 666
            W  + PF+  + ++  G+ + + L +          L S +   +SHF+VYR+ T++   G L+ V+F +M+   +G  LER +GS  LL L+ +L  ++NA F     LL+ L   Y  ++T   + N        ++ ++  +E   +    R  F L +++P ++Y   L +   L +   S L   C +  G+AY  G    + P  S  +  E+  LA+ V+RP +I+
Sbjct:   18 WWESIPFLTSAVVIVCGMIYFVCLLVGYDSFFEVCFLPSAV---VSHFQVYRVFTSILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLFLI-ILLAISNALF----HLLIALVVAYNPFYTDQYLMNECAIGFSGILFSMIVIETSLSGVQSRSVFGL-FNVPAKWYAWILLIVFQLLMTNVSLLGHLCGILSGFAYTYGLFNFLMPGASFYSAIEASLLASCVRRPKFIL 241          
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Match: B9H9X7_POPTR (UBA domain-containing protein n=8 Tax=Saliceae TaxID=238069 RepID=B9H9X7_POPTR)

HSP 1 Score: 75.1 bits (183), Expect = 8.740e-12
Identity = 62/227 (27.31%), Postives = 110/227 (48.46%), Query Frame = 1
Query:   10 WSSTCPFVARSTMLGIGVSWLLSLFLPQLDMALRSGIEFTI-SHFEVYRLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTNAAFIGVCGLLVMLGN----KYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFILPWDIPGRYYP--LFLACMLGIMRGSFLDLFCAVGIGYAYADGRLERVKPSRSRLANWE-SGCLANFVQRPGYII 666
            W  + PF+  + ++  GV +L+ L +          +   + SHF+VYR+ T++F  G L+ V+F +++   +G  LER +GS  L A + +L   TNA F     LLV        +Y +   + G   ++ ++  +E   +    R  F L +++P ++Y   L +A  L +   S L   C +  G+AY  G    + P  S  +  E S  L++ V+RP +I+
Sbjct:   18 WWESIPFLTSAVVVVCGVIYLVCLLIGYDSFYEICFLPTAVVSHFQVYRIYTSIFFHGSLLHVLFNMLALVPLGSELERIMGSIRL-AYLIILLATTNAIFHLFIALLVAHNPFHPYQYLLDECAIGFSGILFSMIVIETSLSGVQSRSVFGL-FNVPAKWYAFILLVAFQLLMTNVSLLGHLCGILSGFAYTYGLFNFLMPGASSFSAIEASSWLSSCVRRPKFIL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig976.20749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J746_9PHAE1.110e-13575.20UBA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z2V1_9STRA6.120e-5643.75UBA domain-containing protein n=1 Tax=Tribonema mi... [more]
UPI001C4C936D2.090e-1528.45rhomboid-like protein 15 isoform X3 n=2 Tax=Zingib... [more]
UPI001C4AEC662.180e-1528.45rhomboid-like protein 15 isoform X1 n=6 Tax=Zingib... [more]
A0A482UV15_9ARCH1.650e-1339.76Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A061EXY1_THECC4.190e-1327.43RHOMBOID-like protein 15 n=6 Tax=Malvaceae TaxID=3... [more]
A0A8J5M0A9_ZINOF6.610e-1327.48UBA domain-containing protein n=1 Tax=Zingiber off... [more]
A0A7N2M416_QUELO7.590e-1330.77UBA domain-containing protein n=5 Tax=Fagaceae Tax... [more]
A0A2P5B7Z7_PARAD7.590e-1326.61Peptidase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A... [more]
B9H9X7_POPTR8.740e-1227.31UBA domain-containing protein n=8 Tax=Saliceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig976contigS-firma_M_contig976:21404..25186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.5
Seed ortholog evalue6.4e-100
Seed eggNOG ortholog2880.D7G2V6
Preferred nameRHBDD2
KEGG koko:K05289,ko:K09651,ko:K09652
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0000139,GO:0000165,GO:0001889,GO:0002673,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0002791,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005798,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016310,GO:0016485,GO:0016787,GO:0017171,GO:0019219,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030135,GO:0030137,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032814,GO:0032815,GO:0032879,GO:0032880,GO:0032933,GO:0033554,GO:0034399,GO:0035103,GO:0035556,GO:0036211,GO:0042176,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045893,GO:0045935,GO:0045944,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048731,GO:0048732,GO:0048856,GO:0050708,GO:0050727,GO:0050789,GO:0050794,GO:0050865,GO:0050866,GO:0050896,GO:0051046,GO:0051049,GO:0051171,GO:0051173,GO:0051223,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051252,GO:0051254,GO:0051604,GO:0051716,GO:0060255,GO:0061008,GO:0065007,GO:0070011,GO:0070013,GO:0070201,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0090087,GO:0097708,GO:0098588,GO:0098791,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:2000112,GO:2001141
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUbiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
Ec32 orthologEc-09_004740.1
Exons7
Model size806
Cds size804
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828813.5756829-CDS-S-firma_M_contig976:21403..215481622828813.5756829-CDS-S-firma_M_contig976:21403..21548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 21404..21548 +
1697105178.313424-CDS-S-firma_M_contig976:21403..215481697105178.313424-CDS-S-firma_M_contig976:21403..21548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 21404..21548 +
1622828813.5892563-CDS-S-firma_M_contig976:22071..221761622828813.5892563-CDS-S-firma_M_contig976:22071..22176Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 22072..22176 +
1697105178.3328888-CDS-S-firma_M_contig976:22071..221761697105178.3328888-CDS-S-firma_M_contig976:22071..22176Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 22072..22176 +
1622828813.6010733-CDS-S-firma_M_contig976:22506..226011622828813.6010733-CDS-S-firma_M_contig976:22506..22601Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 22507..22601 +
1697105178.3433392-CDS-S-firma_M_contig976:22506..226011697105178.3433392-CDS-S-firma_M_contig976:22506..22601Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 22507..22601 +
1622828813.6142585-CDS-S-firma_M_contig976:23021..231161622828813.6142585-CDS-S-firma_M_contig976:23021..23116Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 23022..23116 +
1697105178.355329-CDS-S-firma_M_contig976:23021..231161697105178.355329-CDS-S-firma_M_contig976:23021..23116Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 23022..23116 +
1622828813.627922-CDS-S-firma_M_contig976:23757..238871622828813.627922-CDS-S-firma_M_contig976:23757..23887Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 23758..23887 +
1697105178.3649294-CDS-S-firma_M_contig976:23757..238871697105178.3649294-CDS-S-firma_M_contig976:23757..23887Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 23758..23887 +
1622828813.640995-CDS-S-firma_M_contig976:24453..245371622828813.640995-CDS-S-firma_M_contig976:24453..24537Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 24454..24537 +
1697105178.374406-CDS-S-firma_M_contig976:24453..245371697105178.374406-CDS-S-firma_M_contig976:24453..24537Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 24454..24537 +
1622828813.655978-CDS-S-firma_M_contig976:25035..251851622828813.655978-CDS-S-firma_M_contig976:25035..25185Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 25036..25185 +
1697105178.4021952-CDS-S-firma_M_contig976:25035..251851697105178.4021952-CDS-S-firma_M_contig976:25035..25185Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig976 25036..25185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig976.20749.1prot_S-firma_M_contig976.20749.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig976 21404..25185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig976.20749.1

>prot_S-firma_M_contig976.20749.1 ID=prot_S-firma_M_contig976.20749.1|Name=mRNA_S-firma_M_contig976.20749.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=268bp
YRVWSSTCPFVARSTMLGIGVSWLLSLFLPQLDMALRSGIEFTISHFEVY
RLITTVFCSGGLMTVIFGLMSFNRIGPNLERSLGSTGLLALMAVLTVVTN
AAFIGVCGLLVMLGNKYAVYFTSGGIWNLIIALTAVECMATPDTPRRFFI
LPWDIPGRYYPLFLACMLGIMRGSFLDLFCAVGIGYAYADGRLERVKPSR
SRLANWESGCLANFVQRPGYIISGSAMGAAAYGTPLNNPADHPSNQRNDG
GGGGGGLSSMFGGGGGGG
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mRNA from alignment at S-firma_M_contig976:21404..25186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig976.20749.1 ID=mRNA_S-firma_M_contig976.20749.1|Name=mRNA_S-firma_M_contig976.20749.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3783bp|location=Sequence derived from alignment at S-firma_M_contig976:21404..25186+ (Sphaerotrichia firma Sfir_13m male)
TACCGCGTGTGGTCCAGCACGTGCCCGTTCGTTGCTCGATCCACCATGCT CGGCATCGGAGTGTCCTGGCTCTTGAGCCTTTTCTTGCCCCAGCTCGACA TGGCCCTGAGAAGCGGGATCGAGTTTACCATTAGTCACTTTGAAGGTACG TACTATCTGCATCAGAACACGTGCAACTGCTTGCCTGGAAATTGTCAGCA GAGAAGAGGCCGCACTGCGAAGACCTCGACAGCAGCAAACCTCCGCCCCA GCCGACGTGTGAAGGGTCCGCGGTCCGTTGAACGAGCCAAAACGCATGTG TGACATTTTTTGACGGCGGTGTGCGGTTCGTGAGGCGTGCGTGTGTTTGC GCGTGTCCCCGTCCTACGAGTACGCCACTACGGCTGTCGAACGCAAACAA CCGCCGTGTCGCGGTTTTCACAAATTTCACGATTTTCAGCCGTTTGGCCA TCCCACGACATCTCTGTTGGTTGATCGCGACGTTGTTTTTACTCCCATCT ATGATAGTAGATATGTGTTTGGTAAAGATACCCTCCCCATTTCGCCACTA GTCGTGCTGCGGCGCTGCTAAGATACCCTCCCCATTTTCGCCACTAGTCG TGCTGTTTCGCTGTTTTGGGGCCTAATCCACTGTCCCCGCTCCGCCCCCC GCCCCCCGCCCCCCCCAGTGTACCGGCTTATCACGACGGTGTTCTGTAGC GGGGGCCTGATGACGGTGATATTCGGGCTCATGTCGTTCAACAGAATCGG ACCTAACCTCGAAAGGTCTCTTGGTGAGTGTTTGTAAGAGGCCGGGGTTG CGTTGTTTTGTTTCTTGGTATTTTGATTAGCTGGAAATGTCTTCGATTGA GCGTTGATGTGCTCGTGAATTTTCGACAGGCTCGTGGGGTAGAGATCTGA TTTCTTGCGTGGTACAGAGTGTGTCAGATTCGCTGGATCATGTGTTGGTA CTTCGACGACGACCCTGTTGGCCTTACCCGCTTCCGTCGTGTACCATCCC CGCGGTTGTGTTTGTGTTCGTGCTTGTGGTCGTCGTTTTGTATTATGTTG GTGTTGCGTTGACGCTTGTCGACGACACAACGACGACACTGCTGCTGCTG TAGGCTCGACTGGTCTTCTGGCTCTGATGGCCGTCCTCACGGTCGTCACC AACGCGGCTTTCATCGGCGTCTGCGGCCTTCTCGTCATGCTGGGGAATGT AAGCTAAGCGACAATACAGCCTTAGACTGCACACATGTTTCCCCTCTCAT CATGCGAAGTACGGGCACCCTATCTCGAAGTACGACATGTCGCTCGTTCC CTTTGCCGTACCCTTCTTGCTCTTCTCTTCTCGTCTCGACTGGATCGCGC TATCTAGTCCAGAGAAGACAGCAGCGATGTGTTGCTGCCGTCAGTTGCGG TGTTGCCATCGACAGCAGCGCTCTGTATACGGGAATGCGTGCGGAACGCT ACGTCGGGCGTGCGTCTAGCCCAGCGAACGCCTTCAATGCACACCAGAGG CAGTTAGCGGCTGGAATCCTCTGCGGTGCATCTACTTGCGGGTGCTAAAA TCTGCTCTTGGTGCTTGTTTTGCGCCCGTCGTGTTTGGATGGCACGTTTC CCGGCATGGCATTGACAGAAGTATGCCGTGTACTTCACTTCAGGCGGGAT CTGGAACCTCATCATTGCCCTGACCGCGGTGGAGTGCATGGCGACCCCGG ACACCCCCCGCAGGCACGTGCAAACCCCCAAAAGCACGTACGAGCGCGTG CAGCAGTGCCGTGGTACCGTGGTGCTGGTCCATGTTGTCGCGTCTTTTTG CATGCTGTGTTGCGTCCCGAAGATGTTGTGTTTTCCGTCCTTGCGTGTAG GCGTGGCAGCAGGGTAGACCGGTTTGATCCTCCCTCCCACATGTCGCGCA TCTTTGGAGGTTATTTCGGCATGTTGCACCTCGCGATTGTACTGACTTAG CCTCGTCTCCTGGTGGTAGCTAGAACCAGAGGCTTGGGGGTGGCTTGATG GAGGTCCAGTTTGCCTTGAGGTTAGTCAGCGGTTCTTGTCTCGATGGCAG CTTCGTGGCGCCTGAGGAGTATCGTTTTGTTGGTTGTGAGCGTGCGTGTG TCTACTGTCGACCACTGTTAAACTTACGTGGCGTCAGGCCCACAGAGGGG CGTACACGTATGTAGAAAAATACAGTTTCTCGAGCTCTCGCTCGTTCGGC AGCGAAACGAAGCTACTGCACTGAACGAAGCCATACGTGCCCTTACCTCG AGATGCTGCGATGGCTGTCCAGCCAGCCAAGACTTCCGAAAACCACGTTC ACCTGCACACCTCACTCTGCGGCGTGGTTCACGCTGGACGCATCACATGT GCAGGTTCTTCATCCTGCCGTGGGACATCCCAGGACGCTACTACCCGCTC TTCCTGGCTTGCATGCTCGGCATCATGAGGGGCAGCTTTCTTGACCTCTT CTGCGCCGTGGGGATCGGCTACGCCTACGCGGATGTGAGACCCCGGAAGA CGATTGATCCTGTAACTTGCTTGCTGTCCTCTTGTGCGTTTTTGCCCTCC TTGAGGTTGCTCTGCGGTGGTTTTGTTTTTCTTATTTCGGCGCTCAGCTG AGCTGCTGTGACACCGCTCTCTGCGGTCGGGGTTTTCTTGCTGGCAGGCA CTCGCGTTTTGTGTTGTTGTTGTGTTGTGTCGTGTGTGTGTTAGCAACGG TTGCTTTGTTTTTCGTGGCGCCTTTGGCAGCAGCTGTCGACTCAGCGGGC TGTTCTGGTTCTTGGTTCCTAGGCAGTCCCATGGTAAGGCCGATAATCGC CCCGGGTCGCCTAGGCACACTGACGGTTATCACGACGTCTTGCTATCGTC ACCTTTGTGCGCGTATTTCCGTGCACTTCTGCGGCTGGCCTTGTTGCCGT TGCTTCTTTCTTTTTGTTCTCTTTTGCGCTCCTGCTGCCCTCCGGTCCGT TTCTTCCTTCCTTCTCGTCTTTCGGTTGCTCACGTAATGCTCGCCGCTGG GGGCTGCTGCTCGCTGCCTCACTTTATGCCTTGTGCTGGTGCTTGTGCAG GGGCGGCTGGAAAGGGTGAAGCCGTCAAGGTCGAGACTCGCTAACTGGGA GTCGGGGTGCCTGGCCAACTTCGTGCAACGCCCGGTGAGCCGCCCCTTTC CCTTCCCGCCACGTTCGCCTCTCTCCTTTGTGTTCGCGATTCCCCCGGCT GTAAAATATGCGCGCTGGTCGCTCGTTGCGTCTGCTCCTTTCTCCTCCCA CGGGACCAACCACCACAATCGTCATCAACATCGGAAAGTGGCATCCGGTG GCCATGGTCTTACCTAAACACCTAGCACCCAGCAGGCACCGCACGAGCTA CATGGACACGTACTTTCCCAGAGGGCTTGAGCGCAAGGCCCAGAGGCTTG CAGCGTCACGAACCGCTCCTTGACCAGCCCGTTGCTGAAGCACGCATTTT CGCTTATTTCGCACCGTGATAAAAAAAAAAAAAAAAAAAAATGTCCTCAA CACCGGCCCTTCCCGTCCAATCCTGTCCTAGCGCACTTGTGCCACACCTC ATCGGAGGCCACCGTGGCTCGCTCCTGTTTGTGCTGCTGGGCAACGCTGC TGTTCACTGCACTATTTAACTACACTTGTCAGGGCTACATCATCAGCGGA TCCGCGATGGGAGCAGCGGCGTACGGTACCCCGCTCAACAATCCCGCGGA TCACCCTTCAAACCAGCGAAACGACGGAGGCGGTGGCGGCGGTGGGTTGA GTAGCATGTTCGGGGGCGGCGGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at S-firma_M_contig976:21404..25186+

>mRNA_S-firma_M_contig976.20749.1 ID=mRNA_S-firma_M_contig976.20749.1|Name=mRNA_S-firma_M_contig976.20749.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1608bp|location=Sequence derived from alignment at S-firma_M_contig976:21404..25186+ (Sphaerotrichia firma Sfir_13m male)
TACCGCGTGTGGTCCAGCACGTGCCCGTTCGTTGCTCGATCCACCATGCT
CGGCATCGGAGTGTCCTGGCTCTTGAGCCTTTTCTTGCCCCAGCTCGACA
TGGCCCTGAGAAGCGGGATCGAGTTTACCATTAGTCACTTTGAAGTACCG
CGTGTGGTCCAGCACGTGCCCGTTCGTTGCTCGATCCACCATGCTCGGCA
TCGGAGTGTCCTGGCTCTTGAGCCTTTTCTTGCCCCAGCTCGACATGGCC
CTGAGAAGCGGGATCGAGTTTACCATTAGTCACTTTGAAGTGTACCGGCT
TATCACGACGGTGTTCTGTAGCGGGGGCCTGATGACGGTGATATTCGGGC
TCATGTCGTTCAACAGAATCGGACCTAACCTCGAAAGGTCTCTTGTGTAC
CGGCTTATCACGACGGTGTTCTGTAGCGGGGGCCTGATGACGGTGATATT
CGGGCTCATGTCGTTCAACAGAATCGGACCTAACCTCGAAAGGTCTCTTG
GCTCGACTGGTCTTCTGGCTCTGATGGCCGTCCTCACGGTCGTCACCAAC
GCGGCTTTCATCGGCGTCTGCGGCCTTCTCGTCATGCTGGGGAATGCTCG
ACTGGTCTTCTGGCTCTGATGGCCGTCCTCACGGTCGTCACCAACGCGGC
TTTCATCGGCGTCTGCGGCCTTCTCGTCATGCTGGGGAATAAGTATGCCG
TGTACTTCACTTCAGGCGGGATCTGGAACCTCATCATTGCCCTGACCGCG
GTGGAGTGCATGGCGACCCCGGACACCCCCCGCAGAAGTATGCCGTGTAC
TTCACTTCAGGCGGGATCTGGAACCTCATCATTGCCCTGACCGCGGTGGA
GTGCATGGCGACCCCGGACACCCCCCGCAGGTTCTTCATCCTGCCGTGGG
ACATCCCAGGACGCTACTACCCGCTCTTCCTGGCTTGCATGCTCGGCATC
ATGAGGGGCAGCTTTCTTGACCTCTTCTGCGCCGTGGGGATCGGCTACGC
CTACGCGGATGTTCTTCATCCTGCCGTGGGACATCCCAGGACGCTACTAC
CCGCTCTTCCTGGCTTGCATGCTCGGCATCATGAGGGGCAGCTTTCTTGA
CCTCTTCTGCGCCGTGGGGATCGGCTACGCCTACGCGGATGGGCGGCTGG
AAAGGGTGAAGCCGTCAAGGTCGAGACTCGCTAACTGGGAGTCGGGGTGC
CTGGCCAACTTCGTGCAACGCCCGGGGCGGCTGGAAAGGGTGAAGCCGTC
AAGGTCGAGACTCGCTAACTGGGAGTCGGGGTGCCTGGCCAACTTCGTGC
AACGCCCGGGCTACATCATCAGCGGATCCGCGATGGGAGCAGCGGCGTAC
GGTACCCCGCTCAACAATCCCGCGGATCACCCTTCAAACCAGCGAAACGA
CGGAGGCGGTGGCGGCGGTGGGTTGAGTAGCATGTTCGGGGGCGGCGGCG
GCGGCGGCGGCTACATCATCAGCGGATCCGCGATGGGAGCAGCGGCGTAC
GGTACCCCGCTCAACAATCCCGCGGATCACCCTTCAAACCAGCGAAACGA
CGGAGGCGGTGGCGGCGGTGGGTTGAGTAGCATGTTCGGGGGCGGCGGCG
GCGGCGGC
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