mRNA_S-firma_M_contig9748.20739.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9748.20739.1
Unique NamemRNA_S-firma_M_contig9748.20739.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9748.20739.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 8.680e-45
Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:    1 MLRPRLGAHGHALLCRTKGIGSGSVRR-GRRRLSTTSEPSKPAGSPNAADEEPGWPLKYKLAGGAVLGTIIPWMFSYAVANDPGSRRLVAKLSPGL-----------VQWFRNRQKGGHFFDEDPKRVEY 354
            +L+PRL  HG A L R K I  G +R+ G RRLSTT+EP+KP+   + A EEPGWPLKYK+AGGA+LGTIIP++FSYA+ANDPGSRRLV+KLSPG+           VQWFR RQKGGHFFDEDPKR+EY
Sbjct:    4 VLQPRLPTHGRAPLRRPKVI-EGCIRQHGHRRLSTTAEPAKPS---SPAAEEPGWPLKYKVAGGAILGTIIPYIFSYAMANDPGSRRLVSKLSPGIATTLPGGGRLGVQWFRQRQKGGHFFDEDPKRLEY 129
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9748.20739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT04_ECTSI8.680e-4565.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9748contigS-firma_M_contig9748:337..1741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004340.1
Hectar predicted targeting categorymitochondrion
Exons3
Model size356
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9748.20739.1prot_S-firma_M_contig9748.20739.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9748 337..1741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828812.3146288-CDS-S-firma_M_contig9748:336..4041622828812.3146288-CDS-S-firma_M_contig9748:336..404Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 337..404 -
1697105177.6041706-CDS-S-firma_M_contig9748:336..4041697105177.6041706-CDS-S-firma_M_contig9748:336..404Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 337..404 -
1622828812.3297145-CDS-S-firma_M_contig9748:750..8651622828812.3297145-CDS-S-firma_M_contig9748:750..865Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 751..865 -
1697105177.6177533-CDS-S-firma_M_contig9748:750..8651697105177.6177533-CDS-S-firma_M_contig9748:750..865Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 751..865 -
1622828812.344502-CDS-S-firma_M_contig9748:1570..17411622828812.344502-CDS-S-firma_M_contig9748:1570..1741Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 1571..1741 -
1697105177.63695-CDS-S-firma_M_contig9748:1570..17411697105177.63695-CDS-S-firma_M_contig9748:1570..1741Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 1571..1741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9748.20739.1

>prot_S-firma_M_contig9748.20739.1 ID=prot_S-firma_M_contig9748.20739.1|Name=mRNA_S-firma_M_contig9748.20739.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=118bp
MLRPRLGAHGHALLCRTKGIGSGSVRRGRRRLSTTSEPSKPAGSPNAADE
EPGWPLKYKLAGGAVLGTIIPWMFSYAVANDPGSRRLVAKLSPGLVQWFR
NRQKGGHFFDEDPKRVEY
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mRNA from alignment at S-firma_M_contig9748:337..1741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9748.20739.1 ID=mRNA_S-firma_M_contig9748.20739.1|Name=mRNA_S-firma_M_contig9748.20739.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1405bp|location=Sequence derived from alignment at S-firma_M_contig9748:337..1741- (Sphaerotrichia firma Sfir_13m male)
ATGCTAAGGCCTCGACTGGGTGCCCATGGCCATGCACTACTCTGCCGAAC
CAAAGGGATTGGTTCGGGCTCCGTAAGGAGGGGGCGTCGGCGCCTTTCCA
CGACTTCGGAGCCCTCGAAACCCGCTGGTTCGCCCAATGCCGCCGACGAG
GAACCCGGGTGGCCGCTCAAGGTTTGTTCGTGCGTCTGTTCCACAACACG
AGCATTGTGCGGCAAGTGACACGGGGTGGTGCTGCTGGAATGGAAAGCGC
CATTGCATTCCATCTGCCATATTTGCGCACATGAAAATTGGACAAGTACT
TTAGTCTACCCTCTCCAACCCACTTGGGTCAACGTTCTGCGCCATGATAC
AGCGTAGTACTCCGGAGTACATACGTTTCCGCTGTTGTGCACCATTGTAC
AGCAGTAGTACGCTCTCTCTCAGGATTCTGCACTACGGCTGTCTCGAAGG
CAAAATACATGGACCGATTATCTGCCAGCCTTCGTGCCTGTTCGTTCCAA
ACCCGACTAGCTCCGGCCCGGCCTCATGACATTTATGGTAGGATCTAGGA
CCTACTTCGGAGAAGATAACCGCCGCCCGCCACGCTTTAATCTCTGCCAT
ACGCAGCAGCAGTACACTACACGCCCCTCGCCCTTTTTCATGACGAAGGG
TGCTAATACTGTGGGATGATGCGTAGTCGATGCTCGAACAACCACGTTAA
AGTCAATATCTGACTGCCCCCCCCTTCCCCTCCCACCTCGAGGCCATGGG
TGTCCATCCAACTCCTCAATACCTTGCTCTCTCCCTACTCTCAAACCTAG
GCAAGATAACTCAACGCCCGACCCTTGACAATGCTTATGCTTGTATTCTT
TGCTTCTCTGGCGTGAACGTCAACAGTACAAACTGGCAGGAGGCGCAGTG
CTGGGCACGATCATCCCATGGATGTTCTCGTATGCGGTCGCCAACGACCC
GGGCTCGAGGAGGCTCGTCGCGAAGCTGTCGCCAGGGCTGGGTGAGTTGT
TGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTAATGGTTTGGGTCAGTCATGGCCGTGTCTGGCTGCTGCCGGG
GTGTTGTTGTCCCCCCGCGTGTAGGCAAGTACTATCTACTTCTGGAGTGG
CGTTTCATACCCACTATCATAACAGCGGGTCACTGGTGAGCAGAGCGGTC
GTACTGTAGTGATCCCGCGTGTCGCTGTCGCTCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTAATTTGCCTGACTGCTT
GCCTGCTGCGTGGTGTCACGTTGTCGCCACGAAACAGTGCAATGGTTCCG
GAATAGACAAAAGGGCGGGCACTTCTTCGACGAGGACCCCAAGCGAGTCG
AGTAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9748:337..1741-

>mRNA_S-firma_M_contig9748.20739.1 ID=mRNA_S-firma_M_contig9748.20739.1|Name=mRNA_S-firma_M_contig9748.20739.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=708bp|location=Sequence derived from alignment at S-firma_M_contig9748:337..1741- (Sphaerotrichia firma Sfir_13m male)
ATGCTAAGGCCTCGACTGGGTGCCCATGGCCATGCACTACTCTGCCGAAC
CAAAGGGATTGGTTCGGGCTCCGTAAGGAGGGGGCGTCGGCGCCTTTCCA
CGACTTCGGAGCCCTCGAAACCCGCTGGTTCGCCCAATGCCGCCGACGAG
GAACCCGGGTGGCCGCTCAAGATGCTAAGGCCTCGACTGGGTGCCCATGG
CCATGCACTACTCTGCCGAACCAAAGGGATTGGTTCGGGCTCCGTAAGGA
GGGGGCGTCGGCGCCTTTCCACGACTTCGGAGCCCTCGAAACCCGCTGGT
TCGCCCAATGCCGCCGACGAGGAACCCGGGTGGCCGCTCAAGTACAAACT
GGCAGGAGGCGCAGTGCTGGGCACGATCATCCCATGGATGTTCTCGTATG
CGGTCGCCAACGACCCGGGCTCGAGGAGGCTCGTCGCGAAGCTGTCGCCA
GGGCTGGTACAAACTGGCAGGAGGCGCAGTGCTGGGCACGATCATCCCAT
GGATGTTCTCGTATGCGGTCGCCAACGACCCGGGCTCGAGGAGGCTCGTC
GCGAAGCTGTCGCCAGGGCTGGTGCAATGGTTCCGGAATAGACAAAAGGG
CGGGCACTTCTTCGACGAGGACCCCAAGCGAGTCGAGTACTGCAATGGTT
CCGGAATAGACAAAAGGGCGGGCACTTCTTCGACGAGGACCCCAAGCGAG
TCGAGTAC
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