|
|
Homology
BLAST of mRNA_S-firma_M_contig9701.20698.1 vs. uniprot
Match: A0A6H5JUR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 7.300e-10 Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 142 VRVQDS--AETVSEMQAQESHSLMVAIEHEGIAQVRAELEVEREMSDTVLTAPSLAEEHGFRTPLMAAVMRGDLSILTAVLRRFEWRFS 402
++V DS T SE +A+ SH LM IE + VR L + ++LTAPSL EH RTPLMAAV RGDL I TA+L F+ FS
Sbjct: 2 LQVSDSKLTRTYSEREARGSHGLMQMIERGTVDDVRTILLKTQPPDRSILTAPSLEAEHFQRTPLMAAVERGDLPIFTALLHYFDRLFS 90
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 628 |
| Cds size | 627 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622828808.0810885-CDS-S-firma_M_contig9701:544..681 | 1622828808.0810885-CDS-S-firma_M_contig9701:544..681 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 545..681 + |
| 1697105175.0452418-CDS-S-firma_M_contig9701:544..681 | 1697105175.0452418-CDS-S-firma_M_contig9701:544..681 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 545..681 + |
| 1622828808.0971103-CDS-S-firma_M_contig9701:1915..2186 | 1622828808.0971103-CDS-S-firma_M_contig9701:1915..2186 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 1916..2186 + |
| 1697105175.0567534-CDS-S-firma_M_contig9701:1915..2186 | 1697105175.0567534-CDS-S-firma_M_contig9701:1915..2186 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 1916..2186 + |
| 1622828808.1101484-CDS-S-firma_M_contig9701:2456..2639 | 1622828808.1101484-CDS-S-firma_M_contig9701:2456..2639 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 2457..2639 + |
| 1697105175.064848-CDS-S-firma_M_contig9701:2456..2639 | 1697105175.064848-CDS-S-firma_M_contig9701:2456..2639 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 2457..2639 + |
| 1622828808.1226306-CDS-S-firma_M_contig9701:3244..3280 | 1622828808.1226306-CDS-S-firma_M_contig9701:3244..3280 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 3245..3280 + |
| 1697105175.0750515-CDS-S-firma_M_contig9701:3244..3280 | 1697105175.0750515-CDS-S-firma_M_contig9701:3244..3280 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig9701 3245..3280 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9701.20698.1 >prot_S-firma_M_contig9701.20698.1 ID=prot_S-firma_M_contig9701.20698.1|Name=mRNA_S-firma_M_contig9701.20698.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=209bp
AVALHTASHVPRSSSFLPAALLESKGSTWTMTLGNPDDPSQARPSRKVRV
QDSAETVSEMQAQESHSLMVAIEHEGIAQVRAELEVEREMSDTVLTAPSL
AEEHGFRTPLMAAVMRGDLSILTAVLRRFEWRFSKKGRKKCWQVLAGEAC
PQEERDREMRTQLEIQDSQGKNLAMLAALCGNVAILKTIMSEIVHTGATH
VLEESDFEG back to topmRNA from alignment at S-firma_M_contig9701:545..3281+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig9701.20698.1 ID=mRNA_S-firma_M_contig9701.20698.1|Name=mRNA_S-firma_M_contig9701.20698.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2737bp|location=Sequence derived from alignment at S-firma_M_contig9701:545..3281+ (Sphaerotrichia firma Sfir_13m male)
GCCGTTGCCCTGCACACTGCATCACACGTACCACGTTCCTCTTCCTTCCT
TCCGGCAGCGCTGTTGGAATCCAAAGGGTCAACATGGACCATGACCTTAG
GCAACCCCGACGATCCCAGTCAAGCCCGGCCATCTCGGTGCGTGGAGTCG
AAACAATGTTTGAAAATCACACGGGAAAATGTTTATTTCTGAACGCGGGA
CTGTCATGTTTTTTTTTCCGATGTAAAGAACATGGCAACGGCGGGCACCA
AGCACCAGCATGGCGTGTTTGCGTGTGTGCCTGCGAGAGGGGCGAGGTAC
ACCACGAGCCTGGCTGTCGCGAACACTACAGCACCTGATGCGGCTCGCAG
ATCTTATCCAGATTTTGCCGCATCTTTTTCGGCAGAGAGACCAGACACCT
TCCCGATAGTTTTGTCCGACACAACTCCATCTCCGCGTTCAACCGTTTCG
ATGTTCCTCTCTCCCGCGCCCTCCAACTGCTGCCGTTCGTAGTTATGCGC
TCCTTAATTTATTCACACCCGTCGACTATCTGTACCTGCTGTCTTAGCCC
CAGCGACCGGCGCTCTGTGTATGCTTTAGCAGGGTCTGGAAGCCGATACT
ATTTCTATCCCAGGGGCGGGCTGGTCTACTGCGGTATTGTTGTGGGTATC
CCTCTCAGGAACCTCAGCAACCTCTCAAAGGTGTTCGCCTCTCCTTAAGT
GACACGACGAGGCCAGGGGCCAGGGGCGATGAAAAATAATAAAATATTTG
TTCGGGAAGATACAGCAGAAGTACCGGTTGAAGCGCCGACCACCGGACAC
CACCGTGGGTCGCTATTCTCGTGCCCCCTCCTTTTTTTTCTTTTCTTAGC
GGGCAGCGGGGTGTGTGTGTGCACGTCGTTGCCGTAAAAGCTCTCGGCAC
ACACATACACCATGCCCCACACGACTGGCACGCCCTGAGACAGCACGATG
GAGCACACGATTGAAGTGGCCCGATGCAATCGGTGCTGCCTAGTAGATTC
CAGCTGTTTCATTGTGTTCATGTTCTGCTGTGTGCTAGAGTTAGCTGCTG
GTGTATTTCTTTTTGTTGTTCCGTGTCTATTTTCAAGTCATCCAGTCTAA
AATCAAGTTTAAGCGTACAGAGCGACAAAGCTTCCTGTTTTTGATCGAAG
GGTATGGGGGGCACACAGGTGTGATTTAGAAATCTCGTCGAACGACAAAG
CCTCCTGTTTTTGAACGAAGGGCATGGGGGGCACACAGGAGTGAATCAGA
AATCTCGCTTCACTCGAATAAAGCAGAGTCTCGTCTCTTTTGTGGGAGGT
TCCTTCCTTCACTTTGTTTTTTTCCGTTCAAAATACCTCCGCCCGCCCCG
CTGCTTCTATCCGGTCATCAGAAAAGTGCGGGTTCAAGACTCGGCAGAAA
CCGTGAGCGAGATGCAGGCCCAAGAGTCTCACAGCCTCATGGTCGCGATC
GAACATGAGGGCATCGCCCAGGTCCGCGCGGAGCTCGAGGTGGAGCGGGA
GATGTCGGACACCGTGCTGACGGCGCCGAGCCTCGCGGAGGAGCACGGGT
TCCGCACCCCTCTCATGGCGGCCGTCATGCGGGGAGACTTGTCCATCCTC
ACGGCGGTCCTTCGCCGGTTCGAGTGGCGCTTCTCGAAGAAGGTGAGATC
GTGTGTACCATGCGTCAGTGTGCGCCTTTCGCACAACCGTGAGGTAGGGC
TTGCATATTTTGAACGCTGTTTGGTGCATGTTTTCGCTTGCACGGCCAAG
GTCTTGTCGAACTTTTTACTCCGCAAGGCTCTGACTGCGAGAATGACATC
TCTGTAGTGTTCAAAGGATGCATTTGCTTTTCGTGCAAACCGAAGAAACG
AACACTGCTGTGGTGGTCAAAGTGGGACTCCATGCGGTGCCGCCGTGCTC
ATCGCTCAACAGGGTCGCAAGAAGTGCTGGCAAGTTCTCGCCGGCGAGGC
TTGCCCCCAGGAGGAGAGGGATCGCGAGATGCGGACCCAGTTGGAGATTC
AAGACTCTCAGGGAAAGAACTTGGCGATGCTGGCTGCACTGTGCGGAAAC
GTGGCGATCCTCAAGACGATTATGTCTGAGATTGTCCACACCGGGGTGAG
CAAAAAGGTCTCCTGTGCAATGTATACTCTACTGTATGGCCACGTTTTCG
GAGCCTCCAGATATCGCCGAAAGTGGTGTCGGCATTTTTAATTTTTCCAT
TTCACGCTTTTTTGGTCGTCGTGTCGTCGGCGGAAAAGATTCGAGGTCGG
CTCTCATGGCGAAATCTCAGGCTAAAAATACGTGTCCGCTTGCAAAGGGA
TGTGCTGAACGCGCTCGCCTTTATCGTGCAGCTCCCGTCCGTTTCACGCA
TCGGTTGCTATACGTTGACTAGATTTTGTCGCCTTGTCAAGGGAAAGATG
CCGAAAAACAAAATCCCTGCTACAGGGGTTCCGTGACTCGTCTGACTCCG
AGGGTTGCGGCGGGTGCTCAGCCGACGTGACTCTGTTCGAACTGTTGCGG
TTCTCTTCACTGAATTATGTTCCTTCACGCTGGGGTCCGCAGTTTTTGCT
CGATATTTCGCCATGGCGCGGCAAGCATGCCTCCCGGCTACGTAATTTCT
GCTCGTTGCCTTGAGAACCGCCGAAACCAATAACATTCTGAGTTGAGGTT
ATCGTCTTTCGTATTTGTGATTCTGCCCGGTGTGAGCTGTTCTTCACCAG
GCCACGCACGTCCTCGAGGAGAGCGATTTCGAAGGCA back to topCoding sequence (CDS) from alignment at S-firma_M_contig9701:545..3281+ >mRNA_S-firma_M_contig9701.20698.1 ID=mRNA_S-firma_M_contig9701.20698.1|Name=mRNA_S-firma_M_contig9701.20698.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1254bp|location=Sequence derived from alignment at S-firma_M_contig9701:545..3281+ (Sphaerotrichia firma Sfir_13m male)
GCCGTTGCCCTGCACACTGCATCACACGTACCACGTTCCTCTTCCTTCCT
TCCGGCAGCGCTGTTGGAATCCAAAGGGTCAACATGGACCATGACCTTAG
GCAACCCCGACGATCCCAGTCAAGCCCGGCCATCTCGGCCGTTGCCCTGC
ACACTGCATCACACGTACCACGTTCCTCTTCCTTCCTTCCGGCAGCGCTG
TTGGAATCCAAAGGGTCAACATGGACCATGACCTTAGGCAACCCCGACGA
TCCCAGTCAAGCCCGGCCATCTCGAAAAGTGCGGGTTCAAGACTCGGCAG
AAACCGTGAGCGAGATGCAGGCCCAAGAGTCTCACAGCCTCATGGTCGCG
ATCGAACATGAGGGCATCGCCCAGGTCCGCGCGGAGCTCGAGGTGGAGCG
GGAGATGTCGGACACCGTGCTGACGGCGCCGAGCCTCGCGGAGGAGCACG
GGTTCCGCACCCCTCTCATGGCGGCCGTCATGCGGGGAGACTTGTCCATC
CTCACGGCGGTCCTTCGCCGGTTCGAGTGGCGCTTCTCGAAGAAGAAAAG
TGCGGGTTCAAGACTCGGCAGAAACCGTGAGCGAGATGCAGGCCCAAGAG
TCTCACAGCCTCATGGTCGCGATCGAACATGAGGGCATCGCCCAGGTCCG
CGCGGAGCTCGAGGTGGAGCGGGAGATGTCGGACACCGTGCTGACGGCGC
CGAGCCTCGCGGAGGAGCACGGGTTCCGCACCCCTCTCATGGCGGCCGTC
ATGCGGGGAGACTTGTCCATCCTCACGGCGGTCCTTCGCCGGTTCGAGTG
GCGCTTCTCGAAGAAGGGTCGCAAGAAGTGCTGGCAAGTTCTCGCCGGCG
AGGCTTGCCCCCAGGAGGAGAGGGATCGCGAGATGCGGACCCAGTTGGAG
ATTCAAGACTCTCAGGGAAAGAACTTGGCGATGCTGGCTGCACTGTGCGG
AAACGTGGCGATCCTCAAGACGATTATGTCTGAGATTGTCCACACCGGGG
GTCGCAAGAAGTGCTGGCAAGTTCTCGCCGGCGAGGCTTGCCCCCAGGAG
GAGAGGGATCGCGAGATGCGGACCCAGTTGGAGATTCAAGACTCTCAGGG
AAAGAACTTGGCGATGCTGGCTGCACTGTGCGGAAACGTGGCGATCCTCA
AGACGATTATGTCTGAGATTGTCCACACCGGGGCCACGCACGTCCTCGAG
GAGAGCGATTTCGAAGGCGCCACGCACGTCCTCGAGGAGAGCGATTTCGA
AGGC back to top
|