mRNA_S-firma_M_contig969.20675.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig969.20675.1
Unique NamemRNA_S-firma_M_contig969.20675.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig969.20675.1 vs. uniprot
Match: D8LC38_ECTSI (Casc1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC38_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.340e-84
Identity = 131/149 (87.92%), Postives = 140/149 (93.96%), Query Frame = 1 
Query:  262 KARLRRAEMLEAMQSSWETYTKCDPRPDAASERELNTFLSQGADEEVPELDQALERCVYGESIAADLLNGTGEALENGDISRVSRNDEFLELLRGLSSDKIDFATAHLISHWDSLSGGDEDFDRTCTTAGGIRFGVWVNVSLKGFRMKT 708
            K RLR AE LEA+QSSWETYTKCDPRPDAASE+ LNTFLSQGADEEVPELDQA+ERCVYGESIAADLLN  G++LENGDISR++RN+EFLELLRGLS DKIDFATAHL+SHWDSLSGGDEDFDRTC TAGGIR GVWVNVSLKGFRMKT
Sbjct:   81 KERLRWAEKLEAVQSSWETYTKCDPRPDAASEKALNTFLSQGADEEVPELDQAMERCVYGESIAADLLNDIGQSLENGDISRMARNEEFLELLRGLSFDKIDFATAHLLSHWDSLSGGDEDFDRTCMTAGGIRVGVWVNVSLKGFRMKT 229
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BLAST of mRNA_S-firma_M_contig969.20675.1 vs. uniprot
Match: A0A6H5J7X6_9PHAE (Casc1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X6_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 7.830e-84
Identity = 131/163 (80.37%), Postives = 144/163 (88.34%), Query Frame = 1 
Query:  241 QDQIAETKARLRRAEMLEAMQSSWETYTKCDPRPDAASERELNTFLSQGADEEV-------PELDQALERCVYGESIAADLLNGTGEALENGDISRVSRNDEFLELLRGLSSDKIDFATAHLISHWDSLSGGDEDFDRTCTTAGGIRFGVWVNVSLKGFRMKT 708
            + Q+AETK RLR AE LEA+QSSWETYTKCDPRPD ASE+ LNTFLSQGADEE         EL+QA+ERCVYGESIAADLLN  G++LENGDISR++RN++FLELLRGLS DKIDFATAHL+SHWDSLSGGDEDFDRTC TAGGIRFGVWVNVSLKGFRMKT
Sbjct:    7 EQQMAETKERLRWAEKLEAVQSSWETYTKCDPRPDTASEKALNTFLSQGADEEARANTTESTELEQAMERCVYGESIAADLLNDIGQSLENGDISRMARNEKFLELLRGLSFDKIDFATAHLLSHWDSLSGGDEDFDRTCMTAGGIRFGVWVNVSLKGFRMKT 169
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BLAST of mRNA_S-firma_M_contig969.20675.1 vs. uniprot
Match: F0X0R2_9STRA (Uncharacterized protein AlNc14C513G12006 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0R2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.660e-5
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 1 
Query:  196 RTEELERLANELQGAQDQIAETKARLR-RAEMLEAMQSSWETYTKCDPRPDAASERELNTFLSQGADEEVPELDQALERCVYGESIAADLLNGTGEALENGDISRVSRNDEFLELLRGLSSDKIDFATAHLISHWDSLSGGDEDFDRTCTTAG---GIRFGVWVNVSLKGFR 699
            R  EL RLA E + ++++I   + RL  +   L+A Q  WE Y KC+ RP A  E ++N FL+  + +   +L    E C     +  DL     EAL   +++ V ++  F++ ++     K +F  AHL+   D  +  +   +   T+A     IR G W+N+  K  R
Sbjct:   72 RESELLRLAIEEETSRERIELHQKRLELKLGSLKAAQD-WERYLKCESRPAADIEGDVNAFLNAWSADMSTDLHHVTECCDTSCLVIDDLTFVGMEALAVDNMALVQQSFAFVDHIQRQIHTKFEFVMAHLLQFADEFTQVNSRNEVKVTSASIHHRIRIGFWINLIPKSSR 242
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig969.20675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC38_ECTSI1.340e-8487.92Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J7X6_9PHAE7.830e-8480.37Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
F0X0R2_9STRA6.660e-529.07Uncharacterized protein AlNc14C513G12006 n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig969contigS-firma_M_contig969:9379..12255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.5e-68
Seed eggNOG ortholog2880.D8LC38
Preferred nameCASC1
KEGG koko:K17580
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0030286,GO:0032838,GO:0032991,GO:0036156,GO:0042995,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0048487,GO:0051012,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.Cancer susceptibility candidate 1 N-terminus
EggNOG OGs28IAT@1,2QQM9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_004320.1
Exons7
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828805.3102949-CDS-S-firma_M_contig969:9378..94121622828805.3102949-CDS-S-firma_M_contig969:9378..9412Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 9379..9412 +
1697105173.1665223-CDS-S-firma_M_contig969:9378..94121697105173.1665223-CDS-S-firma_M_contig969:9378..9412Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 9379..9412 +
1622828805.3373876-CDS-S-firma_M_contig969:10086..102381622828805.3373876-CDS-S-firma_M_contig969:10086..10238Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10087..10238 +
1697105173.1798482-CDS-S-firma_M_contig969:10086..102381697105173.1798482-CDS-S-firma_M_contig969:10086..10238Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10087..10238 +
1622828805.3539207-CDS-S-firma_M_contig969:10530..105931622828805.3539207-CDS-S-firma_M_contig969:10530..10593Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10531..10593 +
1697105173.188519-CDS-S-firma_M_contig969:10530..105931697105173.188519-CDS-S-firma_M_contig969:10530..10593Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10531..10593 +
1622828805.369618-CDS-S-firma_M_contig969:10743..108931622828805.369618-CDS-S-firma_M_contig969:10743..10893Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10744..10893 +
1697105173.1967785-CDS-S-firma_M_contig969:10743..108931697105173.1967785-CDS-S-firma_M_contig969:10743..10893Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 10744..10893 +
1622828805.3825617-CDS-S-firma_M_contig969:11067..111431622828805.3825617-CDS-S-firma_M_contig969:11067..11143Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 11068..11143 +
1697105173.2048438-CDS-S-firma_M_contig969:11067..111431697105173.2048438-CDS-S-firma_M_contig969:11067..11143Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 11068..11143 +
1622828805.3950365-CDS-S-firma_M_contig969:11586..117321622828805.3950365-CDS-S-firma_M_contig969:11586..11732Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 11587..11732 +
1697105173.2130795-CDS-S-firma_M_contig969:11586..117321697105173.2130795-CDS-S-firma_M_contig969:11586..11732Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 11587..11732 +
1622828805.4068754-CDS-S-firma_M_contig969:12168..122551622828805.4068754-CDS-S-firma_M_contig969:12168..12255Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 12169..12255 +
1697105173.2211468-CDS-S-firma_M_contig969:12168..122551697105173.2211468-CDS-S-firma_M_contig969:12168..12255Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig969 12169..12255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig969.20675.1prot_S-firma_M_contig969.20675.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig969 9379..12255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig969.20675.1

>prot_S-firma_M_contig969.20675.1 ID=prot_S-firma_M_contig969.20675.1|Name=mRNA_S-firma_M_contig969.20675.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=236bp
VRASGSKVDEQMGPKKKSKAQKEAERLQAEEEERKAEILRVKREAERVRK
EAEYARRLKEEQVAERTEELERLANELQGAQDQIAETKARLRRAEMLEAM
QSSWETYTKCDPRPDAASERELNTFLSQGADEEVPELDQALERCVYGESI
AADLLNGTGEALENGDISRVSRNDEFLELLRGLSSDKIDFATAHLISHWD
SLSGGDEDFDRTCTTAGGIRFGVWVNVSLKGFRMKT
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mRNA from alignment at S-firma_M_contig969:9379..12255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig969.20675.1 ID=mRNA_S-firma_M_contig969.20675.1|Name=mRNA_S-firma_M_contig969.20675.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2877bp|location=Sequence derived from alignment at S-firma_M_contig969:9379..12255+ (Sphaerotrichia firma Sfir_13m male)
GTCCGCGCGAGTGGATCAAAGGTCGACGAACAAAGTAAGCACCTCGCTTG
GTGCTCACATAGCTGGGGGCCTGGAGAACACCGGTCTTGTATGAGCACAC
CACTTGTTGGTCGTGGATTTGAGGAGGATTTTAAGGATACGAAGATATCG
GAGCTGCGACTGCCCGTATTGTGGAGATCTCACACACGTTTCTATCTTAC
CCTCGGTGGGCGTTCAATGGTAAAGCGATGCACTGCTTGCCGCGCGTGTC
GTTCGTTGCGCCTAGCTTACACAACAACAACAACAACAACAACAACAGCT
GCTGCATGTTGGTGATTTCGACGAAGGATACCATTGTTGTTGTGCATTTT
GCTTGCCATGTTGTCAGCCCCATGTTGTGGGTAAATTATGACCCTAAAGG
TTATGTAAGGTAGGAGGGCAAAAGTGTGGTGAAGGGACTTCGGTTCCCGA
GACATTTCTTTTGTAAGGTAGGAGGGCATATCCCCTGAACCAAAGTAGTC
AGCGGCTGACTACTTTGGTTCAGGGGATATGCCCTCCTACCTTACAGGTT
AGACTAGTACATTAGTATTTTTGTTGACTACAAGGCTAACCACAGACGAC
GTGCTGCGTACACCTTTCGCGTCGACATGGCCACGGGGCCAGATCGGGCT
GAGGCGTGAGTTGACTTGGTGGGTGTGTTTTCCGTCCTTTCACCCATCCA
TGTTGCAGTGGGCCCCAAAAAGAAATCGAAGGCGCAGAAGGAGGCCGAGC
GCCTTCAGGCCGAGGAGGAGGAGCGCAAGGCGGAGATCTTGAGGGTGAAG
CGGGAGGCAGAGAGGGTTCGGAAGGAGGCCGAATATGCTAGGAGGCTTAA
GGAGGAGCAGGTGTGTGTAGGGTGGATTGTGCGTATGTGCGCGGTTCTAT
CTTCTATGTGTACGAAGTACCCTGTGCGGTCGATCTTGTCCCAACTCTCC
ATGCGATTCACAGGGAGGGTACAGCATGGTGAATGCCGTTCTTGGCTCGT
GCGTTGTTTCGCTCGTAAATTTTGTGGTTATTTTTTATCCACAAGCACGA
AAACGATCTAGCTTTGAAGTTCAAGAAGCGGGCAAGAGCCGTAAGTACTT
GTTGATTGTGCAAAGTGCTCAATGTCCTTTCGACTGTTCCCGATGCACGC
AGGTTGCGGAACGGACGGAAGAGCTCGAGCGTCTGGCCAACGAGCTGCAG
GGGGCACAAGACCAGGTGAAAACGTTTGACCTGTGCGCAAGCAGTGAACA
TTCAAACATGTGGGTCATCTCTTATCTTTTGCGATTTCGTGCGAGCAACC
TGCAGCCGCGAGCAACGGAAACATTCAGATCTCAATGTTCTGCGGCATTG
TGACACGACCGATAGATAGCGGAGACGAAGGCTAGGCTGCGGCGAGCCGA
GATGCTCGAGGCGATGCAGTCGTCCTGGGAGACGTACACGAAGTGCGATC
CGCGTCCAGACGCAGCGAGCGAGAGGGAGCTCAACACTTTCCTCAGCCAA
GGGGCGGATGAAGAGGTAATGTCACGTTCCTCTTAAGCAGTACGGCGCGA
TACGGCGTTGACGATGGCGGTTGTGTGGGTGGTGGTGTTGTTGTCCGCTG
TTATTGTGTCGACGTCGTCGTTTTCGCACTTGTTTTTTTGTGATCGTGTT
GTTGCCTTTATCGCTGACCGCTTGGCGAAAAAACACTAGGTACCCGAACT
GGACCAGGCATTGGAACGGTGCGTCTACGGAGAGTCCATTGCAGCCGACT
TGCTGAACGGCACGGGTGAGATTAACCGCATGAGGTGAAAGCCTCGAAAT
TGGTGTTGGTAGTTGTGAATGGTGCATGTTTTGCCAGAGCAACCGCGGTG
CTCACGTGAGGAGGACAGTCGAGGGTAGTTATTTTGCCAAGCACCAGCAT
TGTAGTATGGTGCCTTCGCCGGTTGAATGAGAGACACAATGTCAACTACA
GAGGGCGAATCTGACGCAACCTGTGTGTTCGAGGTTCGTTCAGGATTACC
ACCTGCTTTTTCATCCTCCTCCCCTATGCACACGTTCCAACAAGCGCCCC
TCTTTGGTGAAGCCCTTTGGCCTGGCCTTTTTTCGTTCTCATGAATCAAC
ACATTTGAAGCAAGCCACCTAACAATACCTGAAACCAACGCAAAGCAACA
GAGCACTTGACGACTACACAAACTGGCACGCGTGACATCACACGCATGAA
CTACATAGGTGAAGCCCTGGAGAACGGCGACATCTCGCGGGTGTCCCGAA
ACGACGAGTTCCTAGAGCTCCTCCGAGGCCTGTCGTCGGACAAGATAGAC
TTCGCTACCGCGCACCTTATCAGCCACTGGGATTCGCTTTCGGGCGGGGA
TGAGGTGAGATTTTCCCACCACAAACGGCGCAAGAAGACAATGAAGACAA
TGGTGGAGCATTGTCTGACTCTTGTTAATAATGGTTGGCCCGAGTTACTT
CCCAAGAGTCCTTGCGGGTTCGGGCCAACTGCTTTCATCGTGTTGATAGC
CGGGTGGCTCCTCGCACAAGCCCCACGCAAATAGTTGTCGTGAGGCGATC
TCCGCTTGACACCTCCGTCGTCAACGCGTAGTCAATGTTCACCATCGTCG
CGGTTTGGCTGCCACACAACCCCCCAAATTCTAGCAATATTCGGTGCAGT
GGGGCAACTATCCCGCGTACACAGGCATTGTCATGCTTGCTCCTTCCCCC
GCCACAACACTCCCTCCCCCAAAGCACACAAAATTAAACTTTGACATGCT
TCAAACTTCCCAACCCGTTGCGCGTGCGCCCGGTACGCAGGACTTCGACC
GCACGTGCACGACGGCAGGCGGTATCCGCTTTGGCGTGTGGGTCAACGTC
AGCCTCAAGGGCTTCCGCATGAAGACC
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Coding sequence (CDS) from alignment at S-firma_M_contig969:9379..12255+

>mRNA_S-firma_M_contig969.20675.1 ID=mRNA_S-firma_M_contig969.20675.1|Name=mRNA_S-firma_M_contig969.20675.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1416bp|location=Sequence derived from alignment at S-firma_M_contig969:9379..12255+ (Sphaerotrichia firma Sfir_13m male)
GTCCGCGCGAGTGGATCAAAGGTCGACGAACAAAGTCCGCGCGAGTGGAT
CAAAGGTCGACGAACAAATGGGCCCCAAAAAGAAATCGAAGGCGCAGAAG
GAGGCCGAGCGCCTTCAGGCCGAGGAGGAGGAGCGCAAGGCGGAGATCTT
GAGGGTGAAGCGGGAGGCAGAGAGGGTTCGGAAGGAGGCCGAATATGCTA
GGAGGCTTAAGGAGGAGCAGTGGGCCCCAAAAAGAAATCGAAGGCGCAGA
AGGAGGCCGAGCGCCTTCAGGCCGAGGAGGAGGAGCGCAAGGCGGAGATC
TTGAGGGTGAAGCGGGAGGCAGAGAGGGTTCGGAAGGAGGCCGAATATGC
TAGGAGGCTTAAGGAGGAGCAGGTTGCGGAACGGACGGAAGAGCTCGAGC
GTCTGGCCAACGAGCTGCAGGGGGCACAAGACCAGGTTGCGGAACGGACG
GAAGAGCTCGAGCGTCTGGCCAACGAGCTGCAGGGGGCACAAGACCAGAT
AGCGGAGACGAAGGCTAGGCTGCGGCGAGCCGAGATGCTCGAGGCGATGC
AGTCGTCCTGGGAGACGTACACGAAGTGCGATCCGCGTCCAGACGCAGCG
AGCGAGAGGGAGCTCAACACTTTCCTCAGCCAAGGGGCGGATGAAGAGAT
AGCGGAGACGAAGGCTAGGCTGCGGCGAGCCGAGATGCTCGAGGCGATGC
AGTCGTCCTGGGAGACGTACACGAAGTGCGATCCGCGTCCAGACGCAGCG
AGCGAGAGGGAGCTCAACACTTTCCTCAGCCAAGGGGCGGATGAAGAGGT
ACCCGAACTGGACCAGGCATTGGAACGGTGCGTCTACGGAGAGTCCATTG
CAGCCGACTTGCTGAACGGCACGGGTACCCGAACTGGACCAGGCATTGGA
ACGGTGCGTCTACGGAGAGTCCATTGCAGCCGACTTGCTGAACGGCACGG
GTGAAGCCCTGGAGAACGGCGACATCTCGCGGGTGTCCCGAAACGACGAG
TTCCTAGAGCTCCTCCGAGGCCTGTCGTCGGACAAGATAGACTTCGCTAC
CGCGCACCTTATCAGCCACTGGGATTCGCTTTCGGGCGGGGATGAGGTGA
AGCCCTGGAGAACGGCGACATCTCGCGGGTGTCCCGAAACGACGAGTTCC
TAGAGCTCCTCCGAGGCCTGTCGTCGGACAAGATAGACTTCGCTACCGCG
CACCTTATCAGCCACTGGGATTCGCTTTCGGGCGGGGATGAGGACTTCGA
CCGCACGTGCACGACGGCAGGCGGTATCCGCTTTGGCGTGTGGGTCAACG
TCAGCCTCAAGGGCTTCCGCATGAAGACCGACTTCGACCGCACGTGCACG
ACGGCAGGCGGTATCCGCTTTGGCGTGTGGGTCAACGTCAGCCTCAAGGG
CTTCCGCATGAAGACC
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