mRNA_S-firma_M_contig967.20660.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig967.20660.1
Unique NamemRNA_S-firma_M_contig967.20660.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7G163_ECTSI (Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G163_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.140e-60
Identity = 139/290 (47.93%), Postives = 172/290 (59.31%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS--DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEE 939
            RW+VYCVED+GVG+LP D   LVA Y+QVS     S   GTGLGLH+   H+  M G+LGIASTFA     +E+      GGTLFAV+LPL                 SVE+  AV  AG+                         DDH +N+KL++ KI+  F  S  DVQVL+A DG+MA+D     R  R G      S  L LAG+F+DFH+PN+ G+ECT+RIR  EA NGWPRV I GCTAD+TE  R SF  AGGD V++KPW PGQVER C+ M+A ALD++
Sbjct:  713 RWHVYCVEDSGVGVLPADLPHLVAAYKQVSHGVQKSYA-GTGLGLHICKAHVEAMFGALGIASTFA-----EEST----SGGTLFAVILPLC----------------SVEEAGAVVDAGSN-----------------------ADDHTVNVKLIEHKIRRHFRGSGADVQVLSATDGLMALDVQTAARHVRVG-----GSGGLVLAGIFMDFHLPNLDGIECTRRIRVLEAANGWPRVTICGCTADVTEGVRSSFQDAGGDEVILKPWRPGQVERACNVMVAKALDDD 948          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H341_SCYLO (Phytochrome (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0K1H341_SCYLO)

HSP 1 Score: 213 bits (541), Expect = 1.230e-54
Identity = 135/295 (45.76%), Postives = 174/295 (58.98%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAA--PSSFWGNPP--SRKLTFLVVDDHKLNIKLLQRKIQLTFE--DSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEK 942
            +WY+Y VED+GVG+L +D  ++ A Y+Q+S     S  +GTGL L +S  ++  MSG L IAST +     +E      G GTLFA +LPL  AA  P A   A  VG+              SKAA   P +  G+    +RKL FLV DD K+N+KLLQRKI+  F   + DVQVLTA DG++A++    VR    G+E         LAGMF+D  MPN+ GVECTKR+R+ E EN WPRV I GCTAD +E++  +F  AGGD ++ KPW  GQVER C  ML  A   EK
Sbjct:  430 KWYMYVVEDSGVGVLSSDLSRVGAAYQQISHGKRKS-FAGTGLSLRISKAYVDAMSGRLWIASTLS-----EEGKH---GSGTLFAAMLPLSEAATNPGAHSNAVEVGA--------------SKAAPGWPIAIIGHMSLGARKLAFLVADDLKVNVKLLQRKIEKIFSGVEGDVQVLTASDGLLALEAQTAVRTNTGGDE-------WILAGMFVDLRMPNVDGVECTKRVRELEVENHWPRVLIYGCTADTSENAHKTFADAGGDGIIGKPWQSGQVERACKAMLTAAFQSEK 694          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7FU21_ECTSI (Phytochrome-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU21_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.210e-53
Identity = 135/306 (44.12%), Postives = 173/306 (56.54%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGA-----------VGSVEKRAAVTTAGAAESKAAAPSSFWGNP--------PSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSD--VQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHAL 930
            RWYVYCV D G+GI   +  QLV  YRQVS    S E  G GLGL+V  +H+  M G LGIASTF+    G++       GGTLFAV LPL      PP  E  GA           VGS      V T  A       PSS  G          P +K+  LVVDD K+NI L+++KI + F+DS   VQVL A DG  A++  AF    R    ++G +  + LAG+F+D HMPNM G+ECT++IRQ+E E GW  V I G TAD T+++R  F  AGG  ++ KPW PGQVE +C+ M+ ++L
Sbjct:  523 RWYVYCVRDTGIGIQKGELSQLVMAYRQVSH-GVSKEHQGVGLGLNVCKIHVDDMFGGLGIASTFSDE--GNQRR-----GGTLFAVTLPLL----CPPPEEEEGAEPGTVCTTTSRVGSANDEHLVETTKAMAEITNNPSSVSGGGDNGDKGTGPHKKIALLVVDDQKINITLMEKKIAMVFKDSQTAVQVLLATDGKTAIE--AFQGARRDEPNNNGSAGSVVLAGVFMDLHMPNMDGIECTRKIRQSEVERGWLPVPICGFTADTTQTTRERFQDAGGSDIIYKPWQPGQVEDVCNAMVVNSL 814          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A6H5LI29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI29_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.680e-53
Identity = 133/292 (45.55%), Postives = 169/292 (57.88%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKKDT 951
            RW VY VED GVG+   D   L + YRQ+S  A S E +GTGLGLH+SS HI  MSG LGIAST   A  GD    +    GT+FA  +PL  +                     V  AGA + +  A        P   +TFLVVDDH +N+KLL+ +I  TF+D  +QV+TA DG  A+     V+    G   D D      AG+F+DFHMPNM+G+ECT+ +R+ EA+NGW R  ISGCTADLTE +   F  AGGD VL KPW  G V+ +CH+M+A AL+ EKK +
Sbjct:  724 RWVVYSVEDTGVGVSRGDILVLTSAYRQLSHGA-SKEYAGTGLGLHISSTHIRTMSGGLGIAST--SAQTGDRKDSS----GTIFACAIPLLVSP--------------------VKIAGAVQDETVADPGTTTTVP-HAVTFLVVDDHAVNVKLLKHRITKTFDDRKLQVITATDGETAIQQWEAVK----GLGKDNDH---VFAGVFIDFHMPNMNGMECTECLRRLEAKNGWSRTPISGCTADLTEKATKQFTDAGGDEVLCKPWRAGDVKSMCHRMIAKALEAEKKSS 980          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H350_PETFA (Phytochrome (Fragment) n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A0K1H350_PETFA)

HSP 1 Score: 207 bits (528), Expect = 8.050e-52
Identity = 126/301 (41.86%), Postives = 171/301 (56.81%), Query Frame = 1
Query:   79 WYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS------DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKKDTEEAK 963
            WY YCV+D+GVG+LP D   +   Y Q+   A+ S  SGTGLGLH+S  H+S MSG +G+AST +G A   ++       GTLFAV LPL                G+      +T      S   A +    +  +RKL FL VDDH +N+KL++RKI + F+ +      DV+V TA DG++A+D L  V+     E DD       L G+FLDFHMPN+ G+ECTKRIR+ E E GW R+FI GC+AD T+ +  +F  AGG  V+ KPW  GQ+E +C  ML  A +  +K +   K
Sbjct:  670 WYAYCVKDSGVGLLPDDLPHVGDAYTQIFEGASRSY-SGTGLGLHISKGHVSSMSGGIGVASTASGEAEQGKSS------GTLFAVFLPL---------------CGTTALSLELTPGTGIASGNNADTLQKAHIAARKLVFLAVDDHPVNLKLIERKIGMFFKRTGGDMKVDVEVRTAADGLLALDALVDVQNIT--ECDDA-----VLVGVFLDFHMPNLDGIECTKRIRKLENEKGWSRIFICGCSADPTQQTSDAFQAAGGSDVIYKPWNSGQIEGMCTTMLITAFESSRKGSAAGK 941          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7G6T2_ECTSI (Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T2_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 7.190e-50
Identity = 125/292 (42.81%), Postives = 165/292 (56.51%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS--DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKK 945
            +W+VYCVED+G+G+LP D   LV  YRQ+S  A+ S   GTGLGLH+   H+  M GS GIASTF       E   +   GGTLFAVVLPL                 S E  AAV T    E++                         +N++LL  KI+  F+D+  DV+V++A DG +A++    + E     +  G      LAGMF+DFHMP++ G+ECTKRIR  EA+NGW R+ I GCTAD T++ R  F  AGGD V+ KPW PGQVE IC+ M+A+ L+ E+K
Sbjct:  726 KWHVYCVEDSGIGVLPADLPHLVEAYRQISHGASRSHA-GTGLGLHICRTHMEAMCGSFGIASTF------SEKDTS---GGTLFAVVLPL----------------DSEEPGAAVNTQEPLEAE-------------------------VNLRLLDHKIRRFFKDNGADVEVMSATDGFIALE----MHEAARRNQSHGS----VLAGMFIDFHMPDLDGIECTKRIRLLEADNGWSRIMICGCTADPTQAIRRVFQNAGGDEVISKPWCPGQVESICNAMVANVLNAEQK 958          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A6H5KE71_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE71_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.750e-40
Identity = 101/234 (43.16%), Postives = 132/234 (56.41%), Query Frame = 1
Query:  238 MSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEE 939
            MSG LGIAST   A  GD    +    GT+FA  +PL  +                     V  AGA + +  A        P   +TFLVVDD+ +N+KLL+ +I  TF+DS +QV+TA DG  A+     V+    G   D D      AG+F+DFHMPNM+G+ECT+ +R+ EA+NGW R  ISGCTADLTE +   F  AGGD VL KPW  G V+ +CH+M+A AL+ E
Sbjct:    1 MSGGLGIAST--SAQTGDRKDSS----GTIFACAIPLLVSP--------------------VKIAGAVQDETVADPGKTTTVP-HAVTFLVVDDNAVNVKLLKHRITKTFDDSKLQVITATDGKTAIQQWEAVK----GLGKDNDH---VFAGVFIDFHMPNMNGMECTECLRRLEAKNGWSRTPISGCTADLTEKATKQFTDAGGDEVLCKPWRAGDVKSMCHRMIAKALEAE 200          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H3J6_9PHAE (Phytochrome n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A0K1H3J6_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.020e-34
Identity = 106/282 (37.59%), Postives = 149/282 (52.84%), Query Frame = 1
Query:   76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPR-VFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQML 918
            RW V+ VED GVG+       ++  Y Q+   A  +   GTGLGLH+ ++++  M G+ G+AST               G GTLF   +PL P+A     ++ + A    EK          E K+ AP+     P      FLVVDD KLN++L  +KI L   + D+ V+TAMDG +A   L  V++ RS +      PP+ + G+ +D HMP MSGVECT+RIR  EAE G  R V I   TADLT+ +R     AG  + L KP   G++E IC +++
Sbjct:  914 RWCVFSVEDTGVGVPADQLSSMLKAYEQLYHRAAQNTTQGTGLGLHICTMNVKSMGGAFGVAST--------------PGSGTLFRCAIPLEPSATQN--SDDSSAEHGREKER--------EDKSEAPTQKRARPT----VFLVVDDSKLNLRLCSKKITLALGE-DITVMTAMDGWLA---LQIVQQMRSSD------PPVHITGIIMDKHMPGMSGVECTRRIRAMEAERGCVRPVPIIAFTADLTDVAREELKQAGSTAFLSKPSAAGELESICRELV 1157          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A482SBH5_9ARCH (GAF domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBH5_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 6.860e-24
Identity = 94/310 (30.32%), Postives = 146/310 (47.10%), Query Frame = 1
Query:   79 WYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPL----------------RPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAEN---------------GWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQM 915
            WYV+ VED+G G+   D  ++   Y+Q+S+   S    GTGLGLH+  LH+ LM G LG+AST               G GT+F   LPL                R    L P  ++   +GS  +  A                      ++   ++VVDD  +N++L +RKIQLT   +DV V TA+DG+ A++   +    R+G++         + G+F+D+HMP  SG++    IR+ E  +                +   +I   TADL+E+SR   + AG + VL KP   G++E IC+++
Sbjct:  731 WYVHEVEDSGCGVSSEDLSRIFDAYKQLSS-GVSKVYQGTGLGLHICRLHVELMGGILGVASTL--------------GVGTVFMFALPLNMFLDKLVQEEEEITGRKRPRLHPDEDKIDNIGSTVQSVA----------------------TKDDIYIVVDDSNVNLRLTKRKIQLTL-GNDVTVRTAVDGLEAIEL--YHELLRTGKQGQ-------VRGIFMDYHMPRCSGLDAIIEIRKKELHHIQTLTNSSEDDSSMMAFTPCYIIAFTADLSETSRKGLINAGANEVLAKPTPSGEMETICNRL 993          
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: UPI001AE57860 (ATP-binding protein n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE57860)

HSP 1 Score: 86.7 bits (213), Expect = 7.690e-14
Identity = 80/274 (29.20%), Postives = 114/274 (41.61%), Query Frame = 1
Query:   94 VEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQM 915
            V D GVGI P     +  K+ Q  T+ T  +  GTGLGL +S   I +M G++ + S                G G+ F+V LPLRPAAP P AA                           P+       +R    L+V+D   N+ +    +    ED    V  A  G  A+  L               +   + A + +D  MP M G+ECT+RIRQ EA++G   + I G TA    S R     AG D+ L KP+ P  + ++  +M
Sbjct:  318 VSDTGVGIAPQKLATIFEKFVQADTSVTR-KYGGTGLGLAISKTLIDIMGGTINVESVE--------------GQGSRFSVRLPLRPAAPAPDAA---------------------------PAEVPDAIDARGQKILLVEDSPANVVVASHLL----EDYGYGVDVAEHGAAALSKL--------------QTGTAYFA-ILMDVQMPVMDGLECTRRIRQDEADHGKRHMPIIGMTAHAQASDREKCFAAGMDAYLPKPFDPRDLRKLLVEM 530          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G163_ECTSI1.140e-6047.93Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A0K1H341_SCYLO1.230e-5445.76Phytochrome (Fragment) n=1 Tax=Scytosiphon lomenta... [more]
D7FU21_ECTSI1.210e-5344.12Phytochrome-like protein 2 n=1 Tax=Ectocarpus sili... [more]
A0A6H5LI29_9PHAE1.680e-5345.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0K1H350_PETFA8.050e-5241.86Phytochrome (Fragment) n=1 Tax=Petalonia fascia Ta... [more]
D7G6T2_ECTSI7.190e-5042.81Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5KE71_9PHAE1.750e-4043.16Response regulatory domain-containing protein n=1 ... [more]
A0A0K1H3J6_9PHAE1.020e-3437.59Phytochrome n=1 Tax=Ishige okamurae TaxID=233772 R... [more]
A0A482SBH5_9ARCH6.860e-2430.32GAF domain-containing protein n=1 Tax=archaeon Tax... [more]
UPI001AE578607.690e-1429.20ATP-binding protein n=1 Tax=Asticcacaulis solisilv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig967contigS-firma_M_contig967:2941..6473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue6.6e-41
Seed eggNOG ortholog2880.D7G163
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG0642@1,KOG0519@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size2864
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig967.20660.1prot_S-firma_M_contig967.20660.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig967 4800..6236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828803.2645712-UTR-S-firma_M_contig967:2940..30811622828803.2645712-UTR-S-firma_M_contig967:2940..3081Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 2941..3081 -
1697105172.0086327-UTR-S-firma_M_contig967:2940..30811697105172.0086327-UTR-S-firma_M_contig967:2940..3081Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 2941..3081 -
1622828803.2782664-UTR-S-firma_M_contig967:3099..47991622828803.2782664-UTR-S-firma_M_contig967:3099..4799Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 3100..4799 -
1697105172.0190268-UTR-S-firma_M_contig967:3099..47991697105172.0190268-UTR-S-firma_M_contig967:3099..4799Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 3100..4799 -
1622828803.3326576-UTR-S-firma_M_contig967:6236..64731622828803.3326576-UTR-S-firma_M_contig967:6236..6473Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 6237..6473 -
1697105172.0563946-UTR-S-firma_M_contig967:6236..64731697105172.0563946-UTR-S-firma_M_contig967:6236..6473Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig967 6237..6473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828803.2911084-CDS-S-firma_M_contig967:4799..50631622828803.2911084-CDS-S-firma_M_contig967:4799..5063Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 4800..5063 -
1697105172.0277567-CDS-S-firma_M_contig967:4799..50631697105172.0277567-CDS-S-firma_M_contig967:4799..5063Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 4800..5063 -
1622828803.3043294-CDS-S-firma_M_contig967:5524..56981622828803.3043294-CDS-S-firma_M_contig967:5524..5698Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 5525..5698 -
1697105172.036367-CDS-S-firma_M_contig967:5524..56981697105172.036367-CDS-S-firma_M_contig967:5524..5698Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 5525..5698 -
1622828803.3177085-CDS-S-firma_M_contig967:5888..62361622828803.3177085-CDS-S-firma_M_contig967:5888..6236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 5889..6236 -
1697105172.0473194-CDS-S-firma_M_contig967:5888..62361697105172.0473194-CDS-S-firma_M_contig967:5888..6236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig967 5889..6236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig967.20660.1

>prot_S-firma_M_contig967.20660.1 ID=prot_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=262bp
MSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERA
GAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIK
LLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLF
LAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGS
FLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKKDTEEAKGEGEGEGE
GEAQTVMVEGA*
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mRNA from alignment at S-firma_M_contig967:2941..6473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig967.20660.1 ID=mRNA_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3533bp|location=Sequence derived from alignment at S-firma_M_contig967:2941..6473- (Sphaerotrichia firma Sfir_13m male)
GGCGGCGCTGGCGGTGATGGAGGACAGGGGGGATCGGAGTCGCCGCCGGC GCCGGCGCCGGCGCCGGCGCCTCCCCGGTGGTACGTGTACTGCGTCGAAG ACAACGGGGTGGGGATTCTGCCGACCGACTTCGGGCAGCTCGTGGCGAAA TACAGGCAGGTCTCCACCACGGCCACCTCGTCCGAGTGCAGCGGCACCGG GCTCGGCCTGCACGTCAGCAGCCTCCACATCTCCCTCATGTCCGGCAGCC TGGGGATCGCCTCCACCTTCGCGGGGGCGGCGGCGGGGGACGAAACGCCC GTCGCCCCCGGGGGGGGAGGGACCCTGTTCGCGGTCGTGCTGCCCCTGCG TCCGGCGGCCCCGCTGCCGCCGGCTGCCGAGCGGGCGGGGGCGGTGGGCT CGGTGGAGAAGAGAGCGGCGGTGACGACGGCAGGTGCCGCGGAGAGCAAA GCGGCGGCTCCTTCGTCCTTCTGGGGCAATCCGCCGAGCCGGAAGCTAAC GTTCCTGGTGGTGGATGACCACAAGCTCAACATCAAGCTCCTGCAGAGGA AGATACAGCTCACGTTCGAGGACAGCGATGTGCAGGTGTGTGAGAGTTGT TTCAGCGAAGCTTAGTTTTGGTGCTTACTTAGCGTGTTGGGACGACGTTT GATGTGCTTTTTTCCAGCTCGTTTCTTCGAGTCCGGTGTCGACAAGACAT GTCAGGGAACGAACGCCTTCTTTCCTGGTGCCGTTGCCCCTCTACCATTC CCTGCCGGTTTAAACCTGATCTCAGGTGCTGACTGCGATGGATGGCGTCA TGGCGATGGACACGCTGGCGTTCGTGCGAGAGTGCAGATCCGGCGAAGAG GACGACGGCGACTCGCCCCCCCTTTTCCTCGCGGGGATGTTCTTGGACTT CCACATGCCGAACATGTCTGGCGTCGAGTGCACGAAGCGCATCAGACAGG TTGGTTGGTTGGTTGGTTCGTTTCTGCCCCCGCCGGCGTTCGCACGTGCT CTGTAGGCGTATACCGGCGTAGATGTACCAGCAACCGGGTTGGAAAAACG AAAATGAGCACAATCTTTGAGCCCCTCTCCCAAGCAGATGTCTCTCTGGG GCAGGATTTCTGGCACGAACAACCGCCGTGGTGTGCTGTGTATGGTACAA GCGTATACGGCTGACGTACGTAGAAAAATTATGAAAAATTCCAGGTCGAA AGAGGCGAGGTGCCCAACAAGGCTGCCCTGATTCGGCGTGGGTACGACGA GGACCGTGCTCGACTCGCGGATGCAGCCCCCGAAGCCTAGGAGCTGGCGA AACACGAAGTGCGACGCACCAAATCACACCGCAAAACAACAAACAACGAT ACGGGCGTGACCACCCTCCCCTCCCCCCTCCCCTTTGTTGTGCTTCTGCT GCGCTGTCAGGCGGAGGCCGAGAACGGGTGGCCGAGGGTTTTCATCAGCG GCTGCACCGCCGACCTCACGGAGTCTTCGAGGGGAAGTTTCTTGGGCGCG GGGGGGGATAGCGTTCTCATCAAGCCGTGGGGGCCGGGTCAGGTGGAGCG GATATGTCACCAGATGCTCGCGCACGCGCTGGACGAAGAAAAAAAGGACA CGGAGGAGGCGAAGGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGCGCAG ACGGTAATGGTGGAGGGTGCGTGAGGTCTTTCTTGCTGACCCGTCTCCTG AAGCAAACCTCCAAGGGTGTGCGTGCGGGTGGTTGTTTTCTTGTCGGATA TTCTGTCTTCATCTGTTTATTTTTGGTGGTGTACGACACTGTTTCTGTGG TTGTTGTTTTTTTCCCGCCGACCCTTCTCCTTCTGTTTTGTCTTCTTCGG GACGTTGGAGGGTAGTCCAGCTGTGACCTCGTTGTTGTTGTTTCTCTGGC CGTTTCGTGCTCTGTGTGCGGTGCTCCTCTTCCTGCTTAGCGCGCCCACC AGCTGTTGGCGGCAGCCGCCGCCGCCGCCGCCGCGGCGTCGTCTGGTACT ACAAGCAGCCCTGTAACATTTTTTTGCTTTTTACATGTATGTACGATGAT ACTCCGTACTATTTAAGGGGCCGGGGGTACATCGATGTCCATGTAGAGTG TGCGATTGTTTTTCTTTTCCCCGACCAAGAGTTGCAGGTGCTGCTGTAGT ATCGGGGAGAGCTTGTAAGAGTAGGGGTGGTTGTGACGATGCACGCACCC TCCCCCAAAGGCCGACCGCAGTATCAACGTTGTTGTTCCACGCGCCGTCC GTAGTACACGTACGTAATTTATTTGTAGATTCTAAGCAGCTCGCATTGCG GAGAGGAGCATCACACATGGTAGTGGCACACAAGAGCCTAGGGCTTGCTT TGAGAAGCGAGCGGCAACTAATGTTGGCTTTGGCCCATGGCGTGCACGGT ACTATAGGAACCGATAGTATCTAGTTAATTTTTCGGCACGATAGAAGCAA CAAAACAATTTTGGGCGGTTTCAACGCTTCTTCGTCGCTGGCGCGAAAGA GGGCGAAAATGATCGTTGCAGTCAGTCGATGAATAGCCACGTTCATTACA TGTAGAATACCATCTACCGGGCGATGAGCCTTGGTAGCTAAGTGCGTTCG TTCCTGATTGATGGTGCGGTGGTAATGTATTCGGTCGGTAATTACGGTCT AATAAGGGACATATCGTGGTGGGTGCCTACGACAGCAGCAGCGTACTGTA GCCTAGTTCCTAGAAGAAGTACTCATATTTTGTCAGTGTGCCTGCACAGC AGCAGCAGCAGGAGCAGCCGTAGCTCCTCTGAAAATTGTTGTGCAGACCC ATGCGGACATATTTGGAGGTAGGCTACCTAGAAGACGACGGCATCGGGCA CGGAGCTTGCGCCGTCCATCGATATTGGGCATTGAAACATCTTCTTATAT TACCCACGGTGAGCGGCCACAATGTGGGGATGGAGGGGGGGGAGGGGGTA CGGTTCGCAGATGAAACCGTTCAGTTTCCGGTCGGTTTGTAGATTGATGC GTTGTGCGGAGGACCTTTTACGGTGGCGAGAAGGGGGGACTTGGTCCTTT CGCTCACGGAGGGAATCATCTAGAGAAAGAATGGTTTCAGACTTACGCAT ACAACATACGTACCTACCTAACGCTCGGGGTGTCGTGGTGCCTTCACGCA ACACACACACCTGAAATGGTGGCTGTAATTATTGTGCGCGTGTCGGTGGT ACATACAAGTAGTGAGAGGCTTTACACGATGTCTGCGTGAATGGAAGGGA GAGCGAACAGGAACGAAGGTTGATATCGTTTGGGCTTCGAAGTTTTCGAT TGATTCATTAGTTTTGGGTCTCAGGGTGGCTTCATCCCCCTACCTGTCTA TCTCGCGGGTGTGGTATCCCACAGGCGTGTGGTATCCCACAGGCGGGCAA GCGTATGTAGACTATGTAGTATGCAACCGCATGCATGCCAAAGTTAAACA TCCAACACCAATGCCAAGAGAAGGAGCCTGGCGCACAGCAACTGACAGAA AACAAACACGGAACGGATGGGAATGGTCTAGAC
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Coding sequence (CDS) from alignment at S-firma_M_contig967:2941..6473-

>mRNA_S-firma_M_contig967.20660.1 ID=mRNA_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1572bp|location=Sequence derived from alignment at S-firma_M_contig967:2941..6473- (Sphaerotrichia firma Sfir_13m male)
ATGTCCGGCAGCCTGGGGATCGCCTCCACCTTCGCGGGGGCGGCGGCGGG
GGACGAAACGCCCGTCGCCCCCGGGGGGGGAGGGACCCTGTTCGCGGTCG
TGCTGCCCCTGCGTCCGGCGGCCCCGCTGCCGCCGGCTGCCGAGCGGGCG
GGGGCGGTGGGCTCGGTGGAGAAGAGAGCGGCGGTGACGACGGCAGGTGC
CGCGGAGAGCAAAGCGGCGGCTCCTTCGTCCTTCTGGGGCAATCCGCCGA
GCCGGAAGCTAACGTTCCTGGTGGTGGATGACCACAAGCTCAACATCAAG
CTCCTGCAGAGGAAGATACAGCTCACGTTCGAGGACAGCGATGTGCAGAT
GTCCGGCAGCCTGGGGATCGCCTCCACCTTCGCGGGGGCGGCGGCGGGGG
ACGAAACGCCCGTCGCCCCCGGGGGGGGAGGGACCCTGTTCGCGGTCGTG
CTGCCCCTGCGTCCGGCGGCCCCGCTGCCGCCGGCTGCCGAGCGGGCGGG
GGCGGTGGGCTCGGTGGAGAAGAGAGCGGCGGTGACGACGGCAGGTGCCG
CGGAGAGCAAAGCGGCGGCTCCTTCGTCCTTCTGGGGCAATCCGCCGAGC
CGGAAGCTAACGTTCCTGGTGGTGGATGACCACAAGCTCAACATCAAGCT
CCTGCAGAGGAAGATACAGCTCACGTTCGAGGACAGCGATGTGCAGGTGC
TGACTGCGATGGATGGCGTCATGGCGATGGACACGCTGGCGTTCGTGCGA
GAGTGCAGATCCGGCGAAGAGGACGACGGCGACTCGCCCCCCCTTTTCCT
CGCGGGGATGTTCTTGGACTTCCACATGCCGAACATGTCTGGCGTCGAGT
GCACGAAGCGCATCAGACAGGTGCTGACTGCGATGGATGGCGTCATGGCG
ATGGACACGCTGGCGTTCGTGCGAGAGTGCAGATCCGGCGAAGAGGACGA
CGGCGACTCGCCCCCCCTTTTCCTCGCGGGGATGTTCTTGGACTTCCACA
TGCCGAACATGTCTGGCGTCGAGTGCACGAAGCGCATCAGACAGGCGGAG
GCCGAGAACGGGTGGCCGAGGGTTTTCATCAGCGGCTGCACCGCCGACCT
CACGGAGTCTTCGAGGGGAAGTTTCTTGGGCGCGGGGGGGGATAGCGTTC
TCATCAAGCCGTGGGGGCCGGGTCAGGTGGAGCGGATATGTCACCAGATG
CTCGCGCACGCGCTGGACGAAGAAAAAAAGGACACGGAGGAGGCGAAGGG
GGAAGGGGAAGGGGAAGGGGAAGGGGAAGCGCAGACGGTAATGGTGGAGG
GTGCGTGAGCGGAGGCCGAGAACGGGTGGCCGAGGGTTTTCATCAGCGGC
TGCACCGCCGACCTCACGGAGTCTTCGAGGGGAAGTTTCTTGGGCGCGGG
GGGGGATAGCGTTCTCATCAAGCCGTGGGGGCCGGGTCAGGTGGAGCGGA
TATGTCACCAGATGCTCGCGCACGCGCTGGACGAAGAAAAAAAGGACACG
GAGGAGGCGAAGGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGCGCAGAC
GGTAATGGTGGAGGGTGCGTGA
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