mRNA_S-firma_M_contig9666.20658.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9666.20658.1
Unique NamemRNA_S-firma_M_contig9666.20658.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9666.20658.1 vs. uniprot
Match: D8LQ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 8.070e-90
Identity = 242/424 (57.08%), Postives = 277/424 (65.33%), Query Frame = 1 
Query:    1 AQAVQRAAKLIKNSRQIDRD-----DSAALRELDRTVDETSKRVLAWAEGAAAAXXAAVPGGEKEGRQRQVFPSALLAGCCRYMEALATAFPARFSAECRSLVRPAASCA---QQLMMSHGTGAAAAVPGGAVADVEAEAAESHHQGAAAERKSLVIEERRAMELWVDMLGICLLPFCGGGGAAKASN--GQTSAAAGS---------AHADDPLDPXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGGKARSVWVTGWMRRTGVSLAEPLECPLDTRPGGRDEELPRRLAVLGASHAKAAAAASRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGELAGGRDGAADGGHAAVVEEAFSCLVSLSAAAPGGSAQAECVKVALVSLRECVLAARLECLAPRVPALLSMLEGVPSRLKLLLAR 1215
            AQAVQ  AK IK+S Q+        D AA R LD T+ ETS+RVLAW E AAAA  AA P        R+VFP  LL  CCRYMEALATA+PARFSA+CRSL RP ASC     +   +H +    AVP     + + E  E+     +   +++ IEER A+ELWV+MLGICLLPFCG GG ++ ++  G   A +G           H DDP D          XXXXXXXXXXXXXX   VSG GKARS WV GWMRR G++LAEPLECP D RPGGRDE++P RLA L + HA+AAA+ASRP    XXXXXXXXXXXXXXXXXXXXXXXXXT +              HA VVEEAFSCL+ LS   P  SAQAECVK ALVSL+EC  +ARL CL  RVPA LSMLEGVPSRLKLLL R
Sbjct:   18 AQAVQSVAKQIKSSSQVHLKGAAGTDEAATRTLDETISETSRRVLAWVECAAAA--AAAP---HSSDGRRVFPPVLLTSCCRYMEALATAYPARFSADCRSLARPVASCVLVMTRTAKAHDSAIGVAVP---CRETKGEGEENDDGFPSRSGRTITIEERNALELWVEMLGICLLPFCGSGGGSRTTSRSGLGEATSGDDDNSRDPSGEHGDDPFD--------SDXXXXXXXXXXXXXXGSRVSGDGKARSRWVAGWMRRAGITLAEPLECPFDVRPGGRDEDMPVRLATLISYHAQAAASASRPASVSXXXXXXXXXXXXXXXXXXXXXXXXXTPSES------------HALVVEEAFSCLLCLSETVPESSAQAECVKAALVSLKECAQSARLRCLEHRVPAALSMLEGVPSRLKLLLTR 413
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9666.20658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ84_ECTSI8.070e-9057.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9666contigS-firma_M_contig9666:195..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1218
Cds size1218
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9666.20658.1prot_S-firma_M_contig9666.20658.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9666 195..3512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828803.1163578-CDS-S-firma_M_contig9666:194..4021622828803.1163578-CDS-S-firma_M_contig9666:194..402Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 195..402 +
1697105171.921281-CDS-S-firma_M_contig9666:194..4021697105171.921281-CDS-S-firma_M_contig9666:194..402Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 195..402 +
1622828803.1341295-CDS-S-firma_M_contig9666:856..10761622828803.1341295-CDS-S-firma_M_contig9666:856..1076Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 857..1076 +
1697105171.9362404-CDS-S-firma_M_contig9666:856..10761697105171.9362404-CDS-S-firma_M_contig9666:856..1076Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 857..1076 +
1622828803.151618-CDS-S-firma_M_contig9666:1262..16711622828803.151618-CDS-S-firma_M_contig9666:1262..1671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 1263..1671 +
1697105171.946302-CDS-S-firma_M_contig9666:1262..16711697105171.946302-CDS-S-firma_M_contig9666:1262..1671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 1263..1671 +
1622828803.1638787-CDS-S-firma_M_contig9666:2675..29601622828803.1638787-CDS-S-firma_M_contig9666:2675..2960Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 2676..2960 +
1697105171.9566572-CDS-S-firma_M_contig9666:2675..29601697105171.9566572-CDS-S-firma_M_contig9666:2675..2960Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 2676..2960 +
1622828803.1802807-CDS-S-firma_M_contig9666:3416..35121622828803.1802807-CDS-S-firma_M_contig9666:3416..3512Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 3417..3512 +
1697105171.9745808-CDS-S-firma_M_contig9666:3416..35121697105171.9745808-CDS-S-firma_M_contig9666:3416..3512Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9666 3417..3512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9666.20658.1

>prot_S-firma_M_contig9666.20658.1 ID=prot_S-firma_M_contig9666.20658.1|Name=mRNA_S-firma_M_contig9666.20658.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=406bp
AQAVQRAAKLIKNSRQIDRDDSAALRELDRTVDETSKRVLAWAEGAAAAA
AAAVPGGEKEGRQRQVFPSALLAGCCRYMEALATAFPARFSAECRSLVRP
AASCAQQLMMSHGTGAAAAVPGGAVADVEAEAAESHHQGAAAERKSLVIE
ERRAMELWVDMLGICLLPFCGGGGAAKASNGQTSAAAGSAHADDPLDPDS
EDEDEEDADDDDDDNDDDDGNGGGVSGGGKARSVWVTGWMRRTGVSLAEP
LECPLDTRPGGRDEELPRRLAVLGASHAKAAAAASRPASVSSLATALAVL
VAFTASTAGAAAAAGATATGELAGGRDGAADGGHAAVVEEAFSCLVSLSA
AAPGGSAQAECVKVALVSLRECVLAARLECLAPRVPALLSMLEGVPSRLK
LLLAR*
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mRNA from alignment at S-firma_M_contig9666:195..3512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9666.20658.1 ID=mRNA_S-firma_M_contig9666.20658.1|Name=mRNA_S-firma_M_contig9666.20658.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3318bp|location=Sequence derived from alignment at S-firma_M_contig9666:195..3512+ (Sphaerotrichia firma Sfir_13m male)
GCGCAGGCGGTCCAACGCGCGGCCAAGCTGATCAAGAACTCCCGCCAGAT
AGACCGTGACGACTCGGCCGCTTTGCGCGAGTTGGACCGAACCGTCGATG
AAACGTCCAAGAGGGTGTTGGCGTGGGCCGAAGGGGCGGCAGCGGCGGCG
GCGGCCGCAGTTCCTGGTGGCGAAAAAGAAGGCCGACAACGACAGGTCTT
CCCGTCTGGTGAGCTTTCAATTCGCTTGCGTACTTGTTTCTGTGCCCCCC
CCCCAGTCTACACCTACATGTTGGTTTTCGACCCACCCAAATACCAGGAA
TGCATAGGTTCGCTCGAGTGCGTGTGTGTGTGTTTTCGTCTCATGTTTTT
TGGCGACAGCAGCAGTCCCCCCCAATCAAGATGACACGTGTACTACTACA
CCTTGCGGTGTGTTTCAGGGTACTACACTTCGCAGTGCGTTTGTCTGCAC
ACATAACACCACCACCCGAGTCCATACATGCGTACATTCTCACCTCGTGC
CGACAATGCGAGCCGAGGGACGAGGGCGTCGATGGCTTCACTCGGCGTCC
TCGTGGGCGTCCGCTGCACGGGTTGCCGATGCGATTCTACCACCGCCTCG
TTTACCGCCGCGCACCTGCCCCCCCCACCCCGCCCTCCCTCCGTCCCCGG
GCGTATCCGCAGCCCTCCTGGCCGGCTGCTGCAGGTACATGGAGGCGCTG
GCAACGGCCTTCCCAGCCCGCTTCTCGGCCGAGTGCCGGTCCCTCGTGAG
GCCCGCCGCGTCCTGCGCGCAGCAGCTCATGATGTCGCACGGAACGGGAG
CGGCGGCGGCGGTGCCCGGGGGAGCGGTAGCCGACGTCGAGGCGGAAGCG
GCAGAAAGCCACCACCAAGGCGCTGCTGCCGAGTCGCCGCCGCTGCCGCC
GCCGACACCGCCGACACCGCCGACACCGGTGGCTGGCGGCGGCCCCGGCG
GTGCTCCTCCCGCCCCCGCGGAAGAGGAAGGAACCGCCGGGGAAGGCGGA
GACCGCCGCGAGAACGGCGATGGCGCGGTGCAACCGGCGGCGGCGGCGGC
GGCGGCGGCCAGCGATAGAAGGAAGTCCCTCGTCATCGAGGAGAGGAGAG
CGATGGAGCTGTGGGTTGACATGCTCGGCATCTGCCTCCTGCCGTTCTGC
GGCGGCGGCGGAGCGGCCAAGGCTAGCAATGGTCAAACGTCTGCCGCCGC
GGGATCAGCGCATGCCGACGACCCGCTCGACCCCGACAGCGAGGATGAAG
ACGAGGAAGATGCGGACGACGACGACGACGACAACGACGACGACGACGGG
AACGGCGGTGGCGTTTCGGGCGGCGGCAAGGCGAGGTCGGTGTGGGTGAC
GGGGTGGATGCGGCGCACGGGGGTCTCGCTCGCCGAGCCGCTGGAGTGCC
CGCTCGACACCCGGCCCGGGGGGCGAGACGAAGAGTTGCCGCGCCGATTG
GCCGTGCTCGGTGCTTCCCACGCCAAGGTGTGAACTCGTAGCTCTGGCTT
GTGCACGCGGCGGCTGTTCTGCTTTTGCCCTTTTTGTGATGTGGTTTTCT
GAGGGGGAAACCAGCCCGGGCGCTTCTCTGGGAAGACTCTCGAGCTTGCG
GGTGTGTTTTTTTGTCCGAGTCTTTTCGTGCGTGAGGTATTCTTCGCCTG
TAGGCTTGGTGACGGGAGGGAGCTAGTGAAGCTCGGGTCCCGGTACCCTC
GCAGCGTGCTCGATCCGTGCACCTTTTTGGAGCTCCTCTTGCCTTTTTTC
GCGGCTCTTCGTGTGGTACACGCGGTGTATCGGGGGTACGGCAGAGGTAT
GTTTTTTTTTTTTTTTGTTCTCGGGCCCGCCCTGTACGCTGCTGTGTGAT
AACTTCGCTCTCATGTCTTTCGTACTGGAGATGTCTAACCTGTTGCGCGT
GTCCGCTTTCCGCGACTTCTGGCTTGTCACATGTACGAAAACTTCAAAGG
CAGCCACCCCAGGAGGGGGTCCACACCCCCCCCCCTACCATCCTATGTGA
CCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGATAGGGGCCAGTGGG
GCAGACGACAGAATCCAACAATGGGAGGAACAAAACAATAAATGAAACAG
CCTTGCGTTTTTTCTGCCTTGATTTTTGAAGCCACCACGGCAGCTACGTA
CTACTGCCGGCAAGACATGCCAGCATGAAGTGCGCCGTTTCATCACCGGT
AACGGGGTGTGGTTCCATCCAACTGGTACACAGAGAGCTCGGGCGAAAAA
CCCAGACCTCCAAAGCGCGCGCGCCGCAGAAAAAACACCGCGCGCGCCGT
AGAAAAAAACAAAAAAAACACACCGTGCCCGTGCTCGGCCCGACTGCGGC
CGACCACTCCGGGCGGCTCCCGCACCGTCCCCGGCGACGGCGAACCACCC
ACGCAAACCCGAAAAAGCCAAGACGCTGCCGCGCTCTGTGCACCCGAACC
CCCCCCCCCCCCCCCGCCCGCCGTGTTCCAGGCGGCGGCGGCGGCCTCCC
GCCCGGCTTCGGTGTCCTCCCTCGCCACAGCCCTCGCCGTCCTGGTGGCC
TTCACGGCCTCTACCGCCGGCGCTGCCGCTGCCGCCGGCGCTACCGCTAC
CGGGGAGCTCGCGGGAGGGCGAGACGGCGCCGCGGATGGGGGCCACGCGG
CCGTCGTCGAGGAGGCGTTTTCGTGCCTGGTGTCCTTGTCCGCGGCGGCG
CCCGGGGGCAGCGCCCAGGCGGAGTGCGTCAAGGTCGCCCTGGTTTCTCT
CAGGGAGTGCGTGCTGGTAGGTGGTGCGCGCGTGGGAGAGGGAAAGGGGG
ACGGAAGGAAGAAGAGAGGGTGGTCGAAGGAAGAAGAGAGGGCGGTCGGT
CGGTCGGTTCGGCGAAAAAACTTTTGTTGTGGCCTGTTTGGATGAACTGA
CCACCCGACCGCTTCCTCCCGTGTTTTCTTTTTTTTTTGTTTTTTTGGGT
TCGGGATCGCGCGCCTTCCCCTCGTTTCCTTCGGCGAATTTGTTTGTGGC
CTGTTTGGCTGAACGGACCACCCGACCGCTTCCTCCCGTGTGGTTCCGTT
TTCTTCTTTTTTTTTTTTATTCGGGATCGCGCGCCTTCCCCTCGTTTCCT
TCGGCGAGTTTGTGGCCTGTTTGGCTGAACTGACCACCCCACCGCTTCCT
CCCGCGTTTCCGTTTTTTTTTTGGGGGGGGGGTTCGGGATTACGCGCCTT
CTCCTCGTTTCCCTCGCCGCAGGCTGCGCGATTGGAGTGCTTGGCACCGC
GCGTGCCGGCGTTGTTGTCGATGCTGGAGGGAGTGCCTTCCAGGCTGAAG
TTGCTGCTCGCACGGTAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9666:195..3512+

>mRNA_S-firma_M_contig9666.20658.1 ID=mRNA_S-firma_M_contig9666.20658.1|Name=mRNA_S-firma_M_contig9666.20658.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2436bp|location=Sequence derived from alignment at S-firma_M_contig9666:195..3512+ (Sphaerotrichia firma Sfir_13m male)
GCGCAGGCGGTCCAACGCGCGGCCAAGCTGATCAAGAACTCCCGCCAGAT
AGACCGTGACGACTCGGCCGCTTTGCGCGAGTTGGACCGAACCGTCGATG
AAACGTCCAAGAGGGTGTTGGCGTGGGCCGAAGGGGCGGCAGCGGCGGCG
GCGGCCGCAGTTCCTGGTGGCGAAAAAGAAGGCCGACAACGACAGGTCTT
CCCGTCTGGCGCAGGCGGTCCAACGCGCGGCCAAGCTGATCAAGAACTCC
CGCCAGATAGACCGTGACGACTCGGCCGCTTTGCGCGAGTTGGACCGAAC
CGTCGATGAAACGTCCAAGAGGGTGTTGGCGTGGGCCGAAGGGGCGGCAG
CGGCGGCGGCGGCCGCAGTTCCTGGTGGCGAAAAAGAAGGCCGACAACGA
CAGGTCTTCCCGTCTGCCCTCCTGGCCGGCTGCTGCAGGTACATGGAGGC
GCTGGCAACGGCCTTCCCAGCCCGCTTCTCGGCCGAGTGCCGGTCCCTCG
TGAGGCCCGCCGCGTCCTGCGCGCAGCAGCTCATGATGTCGCACGGAACG
GGAGCGGCGGCGGCGGTGCCCGGGGGAGCGGTAGCCGACGTCGAGGCGGA
AGCGGCAGAAAGCCACCACCAAGGCGCTGCTGCCGACCCTCCTGGCCGGC
TGCTGCAGGTACATGGAGGCGCTGGCAACGGCCTTCCCAGCCCGCTTCTC
GGCCGAGTGCCGGTCCCTCGTGAGGCCCGCCGCGTCCTGCGCGCAGCAGC
TCATGATGTCGCACGGAACGGGAGCGGCGGCGGCGGTGCCCGGGGGAGCG
GTAGCCGACGTCGAGGCGGAAGCGGCAGAAAGCCACCACCAAGGCGCTGC
TGCCGAAAGGAAGTCCCTCGTCATCGAGGAGAGGAGAGCGATGGAGCTGT
GGGTTGACATGCTCGGCATCTGCCTCCTGCCGTTCTGCGGCGGCGGCGGA
GCGGCCAAGGCTAGCAATGGTCAAACGTCTGCCGCCGCGGGATCAGCGCA
TGCCGACGACCCGCTCGACCCCGACAGCGAGGATGAAGACGAGGAAGATG
CGGACGACGACGACGACGACAACGACGACGACGACGGGAACGGCGGTGGC
GTTTCGGGCGGCGGCAAGGCGAGGTCGGTGTGGGTGACGGGGTGGATGCG
GCGCACGGGGGTCTCGCTCGCCGAGCCGCTGGAGTGCCCGCTCGACACCC
GGCCCGGGGGGCGAGACGAAGAGTTGCCGCGCCGATTGGCCGTGCTCGGT
GCTTCCCACGCCAAGAAGGAAGTCCCTCGTCATCGAGGAGAGGAGAGCGA
TGGAGCTGTGGGTTGACATGCTCGGCATCTGCCTCCTGCCGTTCTGCGGC
GGCGGCGGAGCGGCCAAGGCTAGCAATGGTCAAACGTCTGCCGCCGCGGG
ATCAGCGCATGCCGACGACCCGCTCGACCCCGACAGCGAGGATGAAGACG
AGGAAGATGCGGACGACGACGACGACGACAACGACGACGACGACGGGAAC
GGCGGTGGCGTTTCGGGCGGCGGCAAGGCGAGGTCGGTGTGGGTGACGGG
GTGGATGCGGCGCACGGGGGTCTCGCTCGCCGAGCCGCTGGAGTGCCCGC
TCGACACCCGGCCCGGGGGGCGAGACGAAGAGTTGCCGCGCCGATTGGCC
GTGCTCGGTGCTTCCCACGCCAAGGCGGCGGCGGCGGCCTCCCGCCCGGC
TTCGGTGTCCTCCCTCGCCACAGCCCTCGCCGTCCTGGTGGCCTTCACGG
CCTCTACCGCCGGCGCTGCCGCTGCCGCCGGCGCTACCGCTACCGGGGAG
CTCGCGGGAGGGCGAGACGGCGCCGCGGATGGGGGCCACGCGGCCGTCGT
CGAGGAGGCGTTTTCGTGCCTGGTGTCCTTGTCCGCGGCGGCGCCCGGGG
GCAGCGCCCAGGCGGAGTGCGTCAAGGTCGCCCTGGTTTCTCTCAGGGAG
TGCGTGCTGGCGGCGGCGGCGGCCTCCCGCCCGGCTTCGGTGTCCTCCCT
CGCCACAGCCCTCGCCGTCCTGGTGGCCTTCACGGCCTCTACCGCCGGCG
CTGCCGCTGCCGCCGGCGCTACCGCTACCGGGGAGCTCGCGGGAGGGCGA
GACGGCGCCGCGGATGGGGGCCACGCGGCCGTCGTCGAGGAGGCGTTTTC
GTGCCTGGTGTCCTTGTCCGCGGCGGCGCCCGGGGGCAGCGCCCAGGCGG
AGTGCGTCAAGGTCGCCCTGGTTTCTCTCAGGGAGTGCGTGCTGGCTGCG
CGATTGGAGTGCTTGGCACCGCGCGTGCCGGCGTTGTTGTCGATGCTGGA
GGGAGTGCCTTCCAGGCTGAAGTTGCTGCTCGCACGGTAGGCTGCGCGAT
TGGAGTGCTTGGCACCGCGCGTGCCGGCGTTGTTGTCGATGCTGGAGGGA
GTGCCTTCCAGGCTGAAGTTGCTGCTCGCACGGTAG
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