mRNA_S-firma_M_contig9655.20651.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI) HSP 1 Score: 414 bits (1063), Expect = 6.030e-136 Identity = 223/259 (86.10%), Postives = 230/259 (88.80%), Query Frame = 1
Query: 1 MSPTGTAAPLPRPPMIK-AEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
MSP G A L RPPM E G A K GGDVDLFARTWESLDFGVVLERLS ECRTEMGR RAL+PDFKTTLEEVHELYERV+EVLLLAGDAVPLR+GM+VE QLAIAA GSTLEP EIAAVASALEGLFELREFFCGA ADAKS GGMV RSGKTPRLAAVAAEI LDEGLLGLLRGAFDSQGELSA RFPEIGRLRSK DSLRQGI+STM++LMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG
Sbjct: 1 MSPIGAATTLLRPPMADDREAAGAAAKGKPAVGGDVDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEPTEIAAVASALEGLFELREFFCGAVADAKSPGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMSRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 259
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE) HSP 1 Score: 407 bits (1046), Expect = 5.230e-135 Identity = 220/259 (84.94%), Postives = 227/259 (87.64%), Query Frame = 1
Query: 1 MSPTGTAAPLPRPPMIK-AEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
MSP G A L RPPM + E G A GGDVDLFARTWESLDFGVVLERLS ECRTEMGR RAL+PDFKTTLEEVHELYERV+EVLLLAGDAVPLR+GM+VE QLAIAA GSTLE EIAAVASALEGLFELREFFCGA ADAK GGMV RSGKTPRLAAVAAEI LDEGLLGLLRGAFDSQGELSA RFPEIGRLRSK DSLRQGI+STM +LMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG
Sbjct: 118 MSPMGAATTLLRPPMAEDREAAGAAATGKPAVGGDVDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEATEIAAVASALEGLFELREFFCGAMADAKGAGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMTRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 376
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA) HSP 1 Score: 210 bits (534), Expect = 1.040e-58 Identity = 127/251 (50.60%), Postives = 151/251 (60.16%), Query Frame = 1
Query: 25 PLPRPPMIKAEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTG----GMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKR 765
PL P K KE G VDLFARTWESLDFGVVLE LS EC T MGR AL DFK +E V LY V EV L + VP+ SGM +E +A+AA G+TLEP E+ V+ L L L+ FF DA G G G TP L + I LD L+ LL AFD+ GEL +FPE+GRLR+++D L IR ++ KL++ G FSGMLADEGR AYVSE+ GRFV+PV PTYKR
Sbjct: 5 PLTYKPPTKQPAEAEPAKEPPADG--VDLFARTWESLDFGVVLEHLSKECWTAMGRKAALKADFKADVESVQALYRGVEEVYSLT-EPVPIASGMDIEAIIALAAKGTTLEPPELREVSDCLTSLSNLKRFFNPEEGDAPVRGVTVSGGAGARYPTPTLQGLTRPIYLDPELVELLHEAFDATGELCGKKFPELGRLRARIDKLYDSIRQSVQKLLSSGTFSGMLADEGRGAYVSEVNGRFVLPVKPTYKR 252
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S3Y253_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y253_HETAK) HSP 1 Score: 164 bits (416), Expect = 2.440e-45 Identity = 102/224 (45.54%), Postives = 133/224 (59.38%), Query Frame = 1
Query: 103 VDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
VDL ARTW+SLDF V+L+ L+ C+T MG+ +A P F + E Y V EV D VPLRSGM VE QLA+AA G+ LE E+ VA+ALEGL LR++ G+ + P L A+ +I E L+ LL GAFD +GELS +FP +G LR + +Q IRS M+ L+A EF+ MLAD V E+ GR+V+ V PTYKR+VG
Sbjct: 94 VDLEARTWQSLDFQVLLDGLAKYCQTAMGQRKARAPHFAGSAAEARARYTAVREVWDCV-DPVPLRSGMDVEAQLALAAQGTVLEVPELREVAAALEGLAALRKWLDGS----------INEKASIPTLKALGEDIRPSEQLVALLDGAFDEEGELSGKKFPRLGALREGILRKKQQIRSMMSSLLASAEFTAMLADP----QVQELEGRYVVAVKPTYKRSVG 302
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A0G4ECS6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECS6_VITBC) HSP 1 Score: 79.7 bits (195), Expect = 2.880e-13 Identity = 66/236 (27.97%), Postives = 113/236 (47.88%), Query Frame = 1
Query: 103 VDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADG---STLEPGEIAAVASALEGLFELREFFCGA------AADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGE---LSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
+DLF RTW+SLD+ VV+ L+ T GR A F + +E LYE+V +V L+ + +P + + +E + ++ +G S+ ++ + +AL+ + L+ + A AA +S G+ L + + LD L L GAF+ + LS +RFPE+ RLR + L +++ + ++ E LAD + GRFVI V Y++ +G
Sbjct: 57 LDLFERTWQSLDWRVVMASLAEAASTSPGRRLARSASFAGSHDECLVLYEQVGDVRRLS-EQLPFATSLDIEHLVNVSDEGRARSSFSLPDLYRIGTALDDVTHLKGWLSAAHDRLVAAAKRESDRGI-------GSLLELMEPVQLDSELTDLFNGAFEGSEDSPVLSGNRFPELRRLRESIARLEMSLQARIEQIARRPELQPKLADGSGGKWSRTDTGRFVIAVQRRYRKGLG 284
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S1YWC1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWC1_TRICV) HSP 1 Score: 72.0 bits (175), Expect = 6.880e-11 Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 481 PRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
PRLA+ I +D LL LL AFD G LS D FPE+GRLRSKV +L++ + + + L+A S L+ E SE+ GR V+PV + +VG
Sbjct: 39 PRLASF---IEVDPDLLELLEDAFDDDGRLSGDAFPEVGRLRSKVRTLKRDVLARLETLLAAPSLSSKLSLESGGPMYSEVNGRIVVPVDSSKGNSVG 133
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: K0RMS7_THAOC (Smr domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RMS7_THAOC) HSP 1 Score: 72.8 bits (177), Expect = 6.970e-11 Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 484 RLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTY 759
+L ++ +I +DE L+ LL AFD +G+LS FP IGRLRSK+ +L++GI S++ ++A LA E + +SEI GR VIPV Y
Sbjct: 461 QLPSLVKQIHMDEELIELLATAFDEEGKLSGTTFPSIGRLRSKIRTLKRGILSSIESILALPSMRNKLAVESGGSLMSEINGRIVIPVQQQY 552
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A357EHG3_9BACT (Endonuclease MutS2 n=3 Tax=Nitrospira sp. TaxID=70125 RepID=A0A357EHG3_9BACT) HSP 1 Score: 67.4 bits (163), Expect = 4.240e-9 Identity = 58/218 (26.61%), Postives = 100/218 (45.87%), Query Frame = 1
Query: 109 LFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVL--LLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLR---GAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPV 747
LF + ++L++ VLE LS + ++ +GR R + L + H E SE++ L + VP + + A+ G LE GE+ A L + EL + A+S G+T RLA V + + L G+LR A G + PE+ RL L+Q +R +++++ + +L +E+Y ++ GR+V+PV
Sbjct: 38 LFDQATQALEWPRVLEFLSLQAQSAIGRARCQSLSLASELTDAHHRQEETSEMVAWLEGSNPVPALGFPDIREPVNRASKGGVLEAGELRDCAIVLAMIAELERY-------AES------HKGETQRLAQVLEPLRATKALQGVLRVIEAAIQPDGAMKETASPELRRLTHHAQGLKQEMRGHLDRILQSRRYEEVL----QESYFAQREGRYVVPV 238
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S1BBM6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBM6_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 6.210e-8 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 481 PRLAAVAAEITLDEGLLGLLRGAFDSQ--GELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLA--DEGREAYVSEIAGRFVIPVTPTYKRTVG 774
P L + + + E L LL AFD G+L RFP + LR K+ SLR+ + + L+ FS ML+ G A SE+ GRFV+P++PT+K VG
Sbjct: 144 PLLEDLVEPLYIPEELTELLTTAFDKDDPGQLCGKRFPTLKTLRDKISSLRRSVLQQLQSLLKTPSFSSMLSLPPGGAAAGYSEVDGRFVVPLSPTFKNRVG 245
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A3B9JE14_9CHLR (Endonuclease MutS2 (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3B9JE14_9CHLR) HSP 1 Score: 60.8 bits (146), Expect = 6.400e-7 Identity = 55/217 (25.35%), Postives = 98/217 (45.16%), Query Frame = 1
Query: 118 RTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEV--LLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYK 762
+T L++ VLERL+A+C + AL T+L E+ + + VSE LL+ DA + + ++ +A G LEP +I + + L EL++ AAD PRLA ++ + GL+ + +G++ P++ LR ++ + S + K ++ ML D A +++ GR+VIP+ +K
Sbjct: 4 KTLHVLEYPKVLERLAAQCGFSASKELALGLQPSTSLLEIRQRQQEVSEARTLLVTSDAT-IGGAHDIRPKVQLALRGGVLEPIDILDIKTTLISARELKKQLEKRAAD-------------FPRLADISTALPTPSGLVDAISRTVSDRGDVLDGASPKLASLRGEIRVAHDRLMSRLQKYISDPSTVSMLQD----ALITQRDGRYVIPLRSEFK 202 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9655.20651.1 >prot_S-firma_M_contig9655.20651.1 ID=prot_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=258bp MSPTGTAAPLPRPPMIKAEVVGGARKEASVTGGDVDLFARTWESLDFGVVback to top mRNA from alignment at S-firma_M_contig9655:1161..3855+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9655.20651.1 ID=mRNA_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2695bp|location=Sequence derived from alignment at S-firma_M_contig9655:1161..3855+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9655:1161..3855+ >mRNA_S-firma_M_contig9655.20651.1 ID=mRNA_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1548bp|location=Sequence derived from alignment at S-firma_M_contig9655:1161..3855+ (Sphaerotrichia firma Sfir_13m male)back to top |