mRNA_S-firma_M_contig9655.20651.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9655.20651.1
Unique NamemRNA_S-firma_M_contig9655.20651.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 6.030e-136
Identity = 223/259 (86.10%), Postives = 230/259 (88.80%), Query Frame = 1
Query:    1 MSPTGTAAPLPRPPMIK-AEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            MSP G A  L RPPM    E  G A K     GGDVDLFARTWESLDFGVVLERLS ECRTEMGR RAL+PDFKTTLEEVHELYERV+EVLLLAGDAVPLR+GM+VE QLAIAA GSTLEP EIAAVASALEGLFELREFFCGA ADAKS GGMV RSGKTPRLAAVAAEI LDEGLLGLLRGAFDSQGELSA RFPEIGRLRSK DSLRQGI+STM++LMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG
Sbjct:    1 MSPIGAATTLLRPPMADDREAAGAAAKGKPAVGGDVDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEPTEIAAVASALEGLFELREFFCGAVADAKSPGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMSRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 259          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 407 bits (1046), Expect = 5.230e-135
Identity = 220/259 (84.94%), Postives = 227/259 (87.64%), Query Frame = 1
Query:    1 MSPTGTAAPLPRPPMIK-AEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            MSP G A  L RPPM +  E  G A       GGDVDLFARTWESLDFGVVLERLS ECRTEMGR RAL+PDFKTTLEEVHELYERV+EVLLLAGDAVPLR+GM+VE QLAIAA GSTLE  EIAAVASALEGLFELREFFCGA ADAK  GGMV RSGKTPRLAAVAAEI LDEGLLGLLRGAFDSQGELSA RFPEIGRLRSK DSLRQGI+STM +LMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG
Sbjct:  118 MSPMGAATTLLRPPMAEDREAAGAAATGKPAVGGDVDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEATEIAAVASALEGLFELREFFCGAMADAKGAGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMTRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 376          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.040e-58
Identity = 127/251 (50.60%), Postives = 151/251 (60.16%), Query Frame = 1
Query:   25 PLPRPPMIKAEVVGGARKEASVTGGDVDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTG----GMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKR 765
            PL   P  K        KE    G  VDLFARTWESLDFGVVLE LS EC T MGR  AL  DFK  +E V  LY  V EV  L  + VP+ SGM +E  +A+AA G+TLEP E+  V+  L  L  L+ FF     DA   G    G  G    TP L  +   I LD  L+ LL  AFD+ GEL   +FPE+GRLR+++D L   IR ++ KL++ G FSGMLADEGR AYVSE+ GRFV+PV PTYKR
Sbjct:    5 PLTYKPPTKQPAEAEPAKEPPADG--VDLFARTWESLDFGVVLEHLSKECWTAMGRKAALKADFKADVESVQALYRGVEEVYSLT-EPVPIASGMDIEAIIALAAKGTTLEPPELREVSDCLTSLSNLKRFFNPEEGDAPVRGVTVSGGAGARYPTPTLQGLTRPIYLDPELVELLHEAFDATGELCGKKFPELGRLRARIDKLYDSIRQSVQKLLSSGTFSGMLADEGRGAYVSEVNGRFVLPVKPTYKR 252          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S3Y253_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y253_HETAK)

HSP 1 Score: 164 bits (416), Expect = 2.440e-45
Identity = 102/224 (45.54%), Postives = 133/224 (59.38%), Query Frame = 1
Query:  103 VDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            VDL ARTW+SLDF V+L+ L+  C+T MG+ +A  P F  +  E    Y  V EV     D VPLRSGM VE QLA+AA G+ LE  E+  VA+ALEGL  LR++  G+          +      P L A+  +I   E L+ LL GAFD +GELS  +FP +G LR  +   +Q IRS M+ L+A  EF+ MLAD      V E+ GR+V+ V PTYKR+VG
Sbjct:   94 VDLEARTWQSLDFQVLLDGLAKYCQTAMGQRKARAPHFAGSAAEARARYTAVREVWDCV-DPVPLRSGMDVEAQLALAAQGTVLEVPELREVAAALEGLAALRKWLDGS----------INEKASIPTLKALGEDIRPSEQLVALLDGAFDEEGELSGKKFPRLGALREGILRKKQQIRSMMSSLLASAEFTAMLADP----QVQELEGRYVVAVKPTYKRSVG 302          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A0G4ECS6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECS6_VITBC)

HSP 1 Score: 79.7 bits (195), Expect = 2.880e-13
Identity = 66/236 (27.97%), Postives = 113/236 (47.88%), Query Frame = 1
Query:  103 VDLFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLRSGMSVERQLAIAADG---STLEPGEIAAVASALEGLFELREFFCGA------AADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGE---LSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            +DLF RTW+SLD+ VV+  L+    T  GR  A    F  + +E   LYE+V +V  L+ + +P  + + +E  + ++ +G   S+    ++  + +AL+ +  L+ +   A      AA  +S  G+         L  +   + LD  L  L  GAF+   +   LS +RFPE+ RLR  +  L   +++ + ++    E    LAD     +     GRFVI V   Y++ +G
Sbjct:   57 LDLFERTWQSLDWRVVMASLAEAASTSPGRRLARSASFAGSHDECLVLYEQVGDVRRLS-EQLPFATSLDIEHLVNVSDEGRARSSFSLPDLYRIGTALDDVTHLKGWLSAAHDRLVAAAKRESDRGI-------GSLLELMEPVQLDSELTDLFNGAFEGSEDSPVLSGNRFPELRRLRESIARLEMSLQARIEQIARRPELQPKLADGSGGKWSRTDTGRFVIAVQRRYRKGLG 284          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S1YWC1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWC1_TRICV)

HSP 1 Score: 72.0 bits (175), Expect = 6.880e-11
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  481 PRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            PRLA+    I +D  LL LL  AFD  G LS D FPE+GRLRSKV +L++ + + +  L+A    S  L+ E      SE+ GR V+PV  +   +VG
Sbjct:   39 PRLASF---IEVDPDLLELLEDAFDDDGRLSGDAFPEVGRLRSKVRTLKRDVLARLETLLAAPSLSSKLSLESGGPMYSEVNGRIVVPVDSSKGNSVG 133          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: K0RMS7_THAOC (Smr domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RMS7_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 6.970e-11
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  484 RLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTY 759
            +L ++  +I +DE L+ LL  AFD +G+LS   FP IGRLRSK+ +L++GI S++  ++A       LA E   + +SEI GR VIPV   Y
Sbjct:  461 QLPSLVKQIHMDEELIELLATAFDEEGKLSGTTFPSIGRLRSKIRTLKRGILSSIESILALPSMRNKLAVESGGSLMSEINGRIVIPVQQQY 552          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A357EHG3_9BACT (Endonuclease MutS2 n=3 Tax=Nitrospira sp. TaxID=70125 RepID=A0A357EHG3_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 4.240e-9
Identity = 58/218 (26.61%), Postives = 100/218 (45.87%), Query Frame = 1
Query:  109 LFARTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVL--LLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLR---GAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPV 747
            LF +  ++L++  VLE LS + ++ +GR R       + L + H   E  SE++  L   + VP      +   +  A+ G  LE GE+   A  L  + EL  +       A+S        G+T RLA V   +   + L G+LR    A    G +     PE+ RL      L+Q +R  +++++    +  +L    +E+Y ++  GR+V+PV
Sbjct:   38 LFDQATQALEWPRVLEFLSLQAQSAIGRARCQSLSLASELTDAHHRQEETSEMVAWLEGSNPVPALGFPDIREPVNRASKGGVLEAGELRDCAIVLAMIAELERY-------AES------HKGETQRLAQVLEPLRATKALQGVLRVIEAAIQPDGAMKETASPELRRLTHHAQGLKQEMRGHLDRILQSRRYEEVL----QESYFAQREGRYVVPV 238          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A7S1BBM6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBM6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.210e-8
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  481 PRLAAVAAEITLDEGLLGLLRGAFDSQ--GELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLA--DEGREAYVSEIAGRFVIPVTPTYKRTVG 774
            P L  +   + + E L  LL  AFD    G+L   RFP +  LR K+ SLR+ +   +  L+    FS ML+    G  A  SE+ GRFV+P++PT+K  VG
Sbjct:  144 PLLEDLVEPLYIPEELTELLTTAFDKDDPGQLCGKRFPTLKTLRDKISSLRRSVLQQLQSLLKTPSFSSMLSLPPGGAAAGYSEVDGRFVVPLSPTFKNRVG 245          
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Match: A0A3B9JE14_9CHLR (Endonuclease MutS2 (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3B9JE14_9CHLR)

HSP 1 Score: 60.8 bits (146), Expect = 6.400e-7
Identity = 55/217 (25.35%), Postives = 98/217 (45.16%), Query Frame = 1
Query:  118 RTWESLDFGVVLERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEV--LLLAGDAVPLRSGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKSTGGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGRLRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYK 762
            +T   L++  VLERL+A+C     +  AL     T+L E+ +  + VSE   LL+  DA  +     +  ++ +A  G  LEP +I  + + L    EL++     AAD              PRLA ++  +    GL+  +      +G++     P++  LR ++      + S + K ++      ML D    A +++  GR+VIP+   +K
Sbjct:    4 KTLHVLEYPKVLERLAAQCGFSASKELALGLQPSTSLLEIRQRQQEVSEARTLLVTSDAT-IGGAHDIRPKVQLALRGGVLEPIDILDIKTTLISARELKKQLEKRAAD-------------FPRLADISTALPTPSGLVDAISRTVSDRGDVLDGASPKLASLRGEIRVAHDRLMSRLQKYISDPSTVSMLQD----ALITQRDGRYVIPLRSEFK 202          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9655.20651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LGP1_ECTSI6.030e-13686.10MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE5.230e-13584.94DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA1.040e-5850.60Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A7S3Y253_HETAK2.440e-4545.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4ECS6_VITBC2.880e-1327.97Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S1YWC1_TRICV6.880e-1142.86Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0RMS7_THAOC6.970e-1143.48Smr domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A357EHG3_9BACT4.240e-926.61Endonuclease MutS2 n=3 Tax=Nitrospira sp. TaxID=70... [more]
A0A7S1BBM6_9STRA6.210e-838.24Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A3B9JE14_9CHLR6.400e-725.35Endonuclease MutS2 (Fragment) n=1 Tax=Anaerolineae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9655contigS-firma_M_contig9655:1161..3855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue2.9e-113
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
Ec32 ortholog descriptionMutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1
Ec32 orthologEc-10_002970.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size774
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9655.20651.1prot_S-firma_M_contig9655.20651.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9655 1161..3855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828802.256823-CDS-S-firma_M_contig9655:1160..12211622828802.256823-CDS-S-firma_M_contig9655:1160..1221Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 1161..1221 +
1697105171.3970268-CDS-S-firma_M_contig9655:1160..12211697105171.3970268-CDS-S-firma_M_contig9655:1160..1221Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 1161..1221 +
1622828802.2706032-CDS-S-firma_M_contig9655:1504..16771622828802.2706032-CDS-S-firma_M_contig9655:1504..1677Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 1505..1677 +
1697105171.4194846-CDS-S-firma_M_contig9655:1504..16771697105171.4194846-CDS-S-firma_M_contig9655:1504..1677Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 1505..1677 +
1622828802.2850873-CDS-S-firma_M_contig9655:2187..23971622828802.2850873-CDS-S-firma_M_contig9655:2187..2397Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 2188..2397 +
1697105171.433815-CDS-S-firma_M_contig9655:2187..23971697105171.433815-CDS-S-firma_M_contig9655:2187..2397Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 2188..2397 +
1622828802.298357-CDS-S-firma_M_contig9655:2858..29921622828802.298357-CDS-S-firma_M_contig9655:2858..2992Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 2859..2992 +
1697105171.4457936-CDS-S-firma_M_contig9655:2858..29921697105171.4457936-CDS-S-firma_M_contig9655:2858..2992Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 2859..2992 +
1622828802.312811-CDS-S-firma_M_contig9655:3330..34421622828802.312811-CDS-S-firma_M_contig9655:3330..3442Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 3331..3442 +
1697105171.4559908-CDS-S-firma_M_contig9655:3330..34421697105171.4559908-CDS-S-firma_M_contig9655:3330..3442Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 3331..3442 +
1622828802.3281746-CDS-S-firma_M_contig9655:3771..38551622828802.3281746-CDS-S-firma_M_contig9655:3771..3855Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 3772..3855 +
1697105171.4654877-CDS-S-firma_M_contig9655:3771..38551697105171.4654877-CDS-S-firma_M_contig9655:3771..3855Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9655 3772..3855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9655.20651.1

>prot_S-firma_M_contig9655.20651.1 ID=prot_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=258bp
MSPTGTAAPLPRPPMIKAEVVGGARKEASVTGGDVDLFARTWESLDFGVV
LERLSAECRTEMGRVRALVPDFKTTLEEVHELYERVSEVLLLAGDAVPLR
SGMSVERQLAIAADGSTLEPGEIAAVASALEGLFELREFFCGAAADAKST
GGMVGRSGKTPRLAAVAAEITLDEGLLGLLRGAFDSQGELSADRFPEIGR
LRSKVDSLRQGIRSTMNKLMAGGEFSGMLADEGREAYVSEIAGRFVIPVT
PTYKRTVG
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mRNA from alignment at S-firma_M_contig9655:1161..3855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9655.20651.1 ID=mRNA_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2695bp|location=Sequence derived from alignment at S-firma_M_contig9655:1161..3855+ (Sphaerotrichia firma Sfir_13m male)
ATGTCGCCGACAGGGACTGCGGCGCCACTGCCACGACCGCCGATGATAAA GGCCGAGGTGGGTACTTGATTCTCAGGCTTTGTTTTTTTTTGGGGTGGCA CACGATGTCGTTTTGCGGGAAAAGAAAAGGGCAACGACGACGTGAATGGT CGGAGGAAGGGAGGTGAAAGCTGTGCGTTTACCCAACCGTCTGAAAACTT TCCAGCTGGAGCCGAAAGCGTTGACCGTTGAACTGTATCGTGTCGCCGAC CACACCATCAATCGAGCGACCCAGCCGATCAACCAGCACACAACCCAACC AACCGAACGCTGCATCTTACAGGCGGCAACCGCAGCCGCGGGAGTTGGAG GGGCAAGGAAAGAGGCTTCTGTCACTGGGGGAGACGTGGACCTGTTTGCT CGAACCTGGGAATCGCTGGACTTCGGGGTGGTGTTGGAGAGACTCTCGGC GGAGTGCCGCACTGAAATGGGGCGGGTGAGGGCCCTGGTGCCTGATTTCA AGACCACCCTGGAGGAGGTGAGGAGGATATCTATGGATTGGCTGTTATTT TGGTTGGCTGGAGAGCGCTCTACCAGTCGTCGCGAGCGGTCTAGTTGTTT CGGTGATCCCCGAGGTGTTTCAGTACAACCACGGTGCTTATTCGGGGGTG CGCTTGGCCGCCCGTAGTGCTCGCTTGACGCGAAGCTGTGGGGGATACGT TGAGGAAGTGGCGAGGGAGGTAAGGCAGGAGAGACGGAGCAGCGTGCCAA GTCCTTACTCGATGCTGGACCAATCAGCGAAAAGTCGGCGCCAAAGAGCG ACAGTCTGCCCCACTCTAGTGGGAGGGTTCGACCGGTTGCCCTGGACGTG CACGAAACAGGCCCGACTCGCCAAGCCTACCATACAAGCAAGGTTTCGAA AAGTCGTGGCCGCTACCCAAGCACCCTTGCGCCATCACGACCGGTCATCG TTTGTTTGCTATTGCGCCCCAAGCTCGCCAACCGAAGCCGGCTACAACCA CACGCGTCGCGCTTGTGGGTGTGTCAGGTGCACGAGCTGTACGAGCGAGT GAGCGAGGTTCTGCTGCTGGCGGGCGACGCCGTGCCCCTCCGTTCTGGCA TGTCGGTGGAGCGGCAGCTAGCCATCGCGGCCGACGGGTCCACGCTAGAG CCGGGCGAGATCGCGGCCGTGGCGTCGGCGCTGGAGGGTCTCTTCGAGCT CAGGGAGTTCTTCTGCGGAGCCGCCGCCGACGCGAAGGTGTGTGGGGGGC CACACTTAAGGCTTAGTGGATCGCGGAGGAGGAAGGGCGGGGAGGGGAGG GGAGCGGAGGGAGAAGAGACGAGCCTGGTTGTTGTTGGATCCCACTACAG TAGCTTGGTGTCTTTCGATTCCTTTGTGTAGGTTGCTTGTCGGTCTTGCG GCCGGTCTATCCGAACACTCCTGCGTGGTCCTTCGTCAGCGAAAGTGTCA AACCCTTTCTCGACACCTCCGTGCTGCGAAACAAGCCACCCGTGACACTT ATCCCTCAACCCCTGAAGTTTGTCGTCTGCCCCACCCGCTGCCCCTCTCT GGCCCTCGCTCGTACCCTCCCGCCTTCCTCCCGTGGGTGCTTGGCTGCCG ATCTCTTTTCCTACCCACTTGCACGGTGGGCTTCGGACACCTTGTGTACT TTCTCGGCACATCAATCTCGAACATCCAATAATTCCACCACCGCGTAGAG CACTGGCGGTATGGTGGGCCGGTCGGGGAAGACCCCACGACTGGCGGCCG TGGCGGCGGAGATTACACTGGACGAGGGGCTGCTGGGCTTGTTGAGGGGG GCTTTCGACTCCCAGGGAGAGCTTTCGGCAGAGTGAGCTTGTGTTCCCTC GTTTGGTGCTGACTGTCTGAAGCGTCTCTGGGCGGGGTTCTGAACCTTTT GCGTTGGAGTTGGCACTCTTTCCTCCACGCACACATTTCGCGCTCTTGCC TTGCGAATCGTTCTTGGTCTTGCTGCTCAACAAGGCCCGGTCTCCCAACT TGGACGTTCGTATGTACAAGTGGAGTCCTACAGGTTGTGGCTCGTATTAG ATTGTTTCCTGCCCCGCCTCCCATTGGCAGTCTAAAGGGGACAGCCGTGA TTGATCCTGAACACTGCCGTCATTTTGCTCTCCTCGTCGCTCTGGCTGCC ACTTGCTCTGCTGGTTCCAGCCGTTTCCCGGAGATCGGGCGGCTGCGGAG CAAGGTGGATTCTCTTCGGCAAGGCATACGGTCCACGATGAACAAGCTCA TGGCCGGGGGAGAGTTTTCGGGCATGCTGGCCGTGAGTTGACGTCCGAGA GTCAAGAGTACGCGTGCGCCTGGCGTAGGCAGAGGCAGAGGACTCGCGGA GGGGGGGGTGGTAGGGGAAGTTTTCTTTGTCGCGGATGTGTTTTGTCAAC TGCGCCATACATCCCGGGCGGGCGTTCTAGGTTGATGCTCTGTGATCATG CCGAACACCTTATATATTCTGCCACTTATATTCCCTTGCATTTGCCCCGT CGCCGCTACTCGGCCGCCTGGATTTATTTCTGCAAACAACGCACGGACAT GTCGGTGGTTCTCGTGCACGGTTCTATTGCCGCTACGCACGACGACTACA ATGCTGTTCAGGACGAGGGTCGCGAGGCGTACGTGTCGGAGATCGCCGGG CGTTTCGTGATCCCGGTGACGCCGACGTACAAGCGGACGGTGGGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9655:1161..3855+

>mRNA_S-firma_M_contig9655.20651.1 ID=mRNA_S-firma_M_contig9655.20651.1|Name=mRNA_S-firma_M_contig9655.20651.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1548bp|location=Sequence derived from alignment at S-firma_M_contig9655:1161..3855+ (Sphaerotrichia firma Sfir_13m male)
ATGTCGCCGACAGGGACTGCGGCGCCACTGCCACGACCGCCGATGATAAA
GGCCGAGGTGGATGTCGCCGACAGGGACTGCGGCGCCACTGCCACGACCG
CCGATGATAAAGGCCGAGGTGGTTGGAGGGGCAAGGAAAGAGGCTTCTGT
CACTGGGGGAGACGTGGACCTGTTTGCTCGAACCTGGGAATCGCTGGACT
TCGGGGTGGTGTTGGAGAGACTCTCGGCGGAGTGCCGCACTGAAATGGGG
CGGGTGAGGGCCCTGGTGCCTGATTTCAAGACCACCCTGGAGGAGTTGGA
GGGGCAAGGAAAGAGGCTTCTGTCACTGGGGGAGACGTGGACCTGTTTGC
TCGAACCTGGGAATCGCTGGACTTCGGGGTGGTGTTGGAGAGACTCTCGG
CGGAGTGCCGCACTGAAATGGGGCGGGTGAGGGCCCTGGTGCCTGATTTC
AAGACCACCCTGGAGGAGGTGCACGAGCTGTACGAGCGAGTGAGCGAGGT
TCTGCTGCTGGCGGGCGACGCCGTGCCCCTCCGTTCTGGCATGTCGGTGG
AGCGGCAGCTAGCCATCGCGGCCGACGGGTCCACGCTAGAGCCGGGCGAG
ATCGCGGCCGTGGCGTCGGCGCTGGAGGGTCTCTTCGAGCTCAGGGAGTT
CTTCTGCGGAGCCGCCGCCGACGCGAAGGTGCACGAGCTGTACGAGCGAG
TGAGCGAGGTTCTGCTGCTGGCGGGCGACGCCGTGCCCCTCCGTTCTGGC
ATGTCGGTGGAGCGGCAGCTAGCCATCGCGGCCGACGGGTCCACGCTAGA
GCCGGGCGAGATCGCGGCCGTGGCGTCGGCGCTGGAGGGTCTCTTCGAGC
TCAGGGAGTTCTTCTGCGGAGCCGCCGCCGACGCGAAGAGCACTGGCGGT
ATGGTGGGCCGGTCGGGGAAGACCCCACGACTGGCGGCCGTGGCGGCGGA
GATTACACTGGACGAGGGGCTGCTGGGCTTGTTGAGGGGGGCTTTCGACT
CCCAGGGAGAGCTTTCGGCAGAAGCACTGGCGGTATGGTGGGCCGGTCGG
GGAAGACCCCACGACTGGCGGCCGTGGCGGCGGAGATTACACTGGACGAG
GGGCTGCTGGGCTTGTTGAGGGGGGCTTTCGACTCCCAGGGAGAGCTTTC
GGCAGACCGTTTCCCGGAGATCGGGCGGCTGCGGAGCAAGGTGGATTCTC
TTCGGCAAGGCATACGGTCCACGATGAACAAGCTCATGGCCGGGGGAGAG
TTTTCGGGCATGCTGGCCCCGTTTCCCGGAGATCGGGCGGCTGCGGAGCA
AGGTGGATTCTCTTCGGCAAGGCATACGGTCCACGATGAACAAGCTCATG
GCCGGGGGAGAGTTTTCGGGCATGCTGGCCGACGAGGGTCGCGAGGCGTA
CGTGTCGGAGATCGCCGGGCGTTTCGTGATCCCGGTGACGCCGACGTACA
AGCGGACGGTGGGGGACGAGGGTCGCGAGGCGTACGTGTCGGAGATCGCC
GGGCGTTTCGTGATCCCGGTGACGCCGACGTACAAGCGGACGGTGGGG
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