mRNA_S-firma_M_contig9651.20649.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9651.20649.1
Unique NamemRNA_S-firma_M_contig9651.20649.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9651.20649.1 vs. uniprot
Match: A0A6H5JDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.360e-16
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   37 GSLVVVSAAAMDVLRELEHMHAASWEREQRERSLVARLENEGRALQEAEGARRDAESAARAAAAEAEQLAVK 252
            G LV VSAAAMDVLRELE MHAA+WEREQ ER+L+ARLE++   L+ A+ AR   E AARAA AEAE+L VK
Sbjct: 1093 GDLVSVSAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAARAAVAEAERLVVK 1164
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BLAST of mRNA_S-firma_M_contig9651.20649.1 vs. uniprot
Match: D7G6Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.730e-16
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    7 GGGEGGEDGDGSLVVVSAAAMDVLRELEHMHAASWEREQRERSLVARLENEGRALQEAEGARRDAESAARAAAAEAEQLAVKV 255
            GG E GE G   LV VSAAAMDVLRELE MHAA+WEREQ ER+L+ARLE++   L+ A+ AR   E AARAA AEA++L VK+
Sbjct: 1444 GGWEAGERGR-DLVAVSAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRIADEARETHEGAARAAVAEADRLMVKI 1525
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9651.20649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDN1_9PHAE3.360e-1668.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q5_ECTSI8.730e-1663.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9651contigS-firma_M_contig9651:398..1682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828802.051934-CDS-S-firma_M_contig9651:397..5531622828802.051934-CDS-S-firma_M_contig9651:397..553Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9651 398..553 -
1697105171.2628841-CDS-S-firma_M_contig9651:397..5531697105171.2628841-CDS-S-firma_M_contig9651:397..553Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9651 398..553 -
1622828802.0665596-CDS-S-firma_M_contig9651:1583..16821622828802.0665596-CDS-S-firma_M_contig9651:1583..1682Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9651 1584..1682 -
1697105171.271407-CDS-S-firma_M_contig9651:1583..16821697105171.271407-CDS-S-firma_M_contig9651:1583..1682Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9651 1584..1682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9651.20649.1prot_S-firma_M_contig9651.20649.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9651 398..1682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9651.20649.1

>prot_S-firma_M_contig9651.20649.1 ID=prot_S-firma_M_contig9651.20649.1|Name=mRNA_S-firma_M_contig9651.20649.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=85bp
GGGGGEGGEDGDGSLVVVSAAAMDVLRELEHMHAASWEREQRERSLVARL
ENEGRALQEAEGARRDAESAARAAAAEAEQLAVKV
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mRNA from alignment at S-firma_M_contig9651:398..1682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9651.20649.1 ID=mRNA_S-firma_M_contig9651.20649.1|Name=mRNA_S-firma_M_contig9651.20649.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1285bp|location=Sequence derived from alignment at S-firma_M_contig9651:398..1682- (Sphaerotrichia firma Sfir_13m male)
GGGGGCGGGGGCGGAGAGGGGGGTGAAGACGGGGACGGGTCTCTGGTGGT
GGTTTCGGCCGCGGCGATGGACGTGCTGAGGGAGCTGGAGCACATGCATG
TGGGTGTTGGTGTTGGGGTTGGTGTTGGGTGTTGGAGATGGTGTTGGAGT
TGGGTGATTCGCGCGTTTTGAGTTCGAATTCGGGACGTACGTTTGGATGG
ATGTAGAGATGCAGAGAGAAAAAAAACAAAAACAGCTTTGATAGGCAAAG
GGAAATTTTCCACGAATCTAGGTAAAAACGTACGCGCCCATGTTCTCTTG
GGGGCTTAGTCAAGCTGGCGCGCTGTAAATAGCTTTGCGTAGGTGCATAT
TTATAGTTCGCTCACGGTGGAACAGGAGGTTGGCGGCCGCACCTGGCTGG
GCATTTTTTTAAATATATTTTCTACATTCTTCAGCCGTTTACATGTACGT
CCGTCCTGTGAATAAGTCGTTCCAGGGGGGCTGTTGTGTATACACACTTC
CCCTCCCCGTCCCAGCCAACAGCACAAAATCCGCAATCCGTTAGGTTTGT
TGGTTGGTTGGTTTCGTAGTTTGCAAGGGGGTATGTTGTTCAGCGTACTG
TATGGGTGTTATCTTTTTGTGCTGGGGCGTGGTGTTTTGCCGTTCCGATC
TGGTCCGGCGAAAAACCCTCACATAAGACTAGTGTGCCCGCCGACTCGGA
GTAAGAATCTTGACGCGCGAGCCCCATGGTCTGACGACGACGGCCCAGTC
AATAATCATGGTCATGGTGCACGCGCACGGTCCTGATCTCACCACGGAGC
CCCTCGGCTGTTCCCCTGCTCCCTAGGGCGAAATTGGACCCACTATGTTT
TTTTTGCGCTTATTTTATGCTCTTTTTTTTCGAGGAGCATATGCTCCTTT
TTTCAACCCCACTTGTGCTGTTATGCTCCGATAAATGGCCAATTATGCTC
AATTGATGCTCGAAGTATCTCAACTATGCTGAAAAGTCGCAAACATGCTC
CGTTTATGCTCCCAAAAACAAGCACGAATTATGCTATAAGCAATGCTAGC
GTATTGGGCATAACCCTACTGCTCCCTCCGTCTTTTCCGCCGGCTGAAAT
CTGAAATTTGTCGCTGCCAACTGCGGTAGGCTGCCTCGTGGGAGCGCGAG
CAGCGCGAGAGGTCTCTCGTGGCCCGGCTGGAGAACGAGGGGAGGGCGCT
CCAAGAGGCCGAGGGCGCCAGGAGGGACGCGGAAAGCGCGGCGCGCGCGG
CGGCGGCGGAGGCGGAACAACTCGCTGTCAAGGTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9651:398..1682-

>mRNA_S-firma_M_contig9651.20649.1 ID=mRNA_S-firma_M_contig9651.20649.1|Name=mRNA_S-firma_M_contig9651.20649.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=510bp|location=Sequence derived from alignment at S-firma_M_contig9651:398..1682- (Sphaerotrichia firma Sfir_13m male)
GGGGGCGGGGGCGGAGAGGGGGGTGAAGACGGGGACGGGTCTCTGGTGGT
GGTTTCGGCCGCGGCGATGGACGTGCTGAGGGAGCTGGAGCACATGCATG
GGGGCGGGGGCGGAGAGGGGGGTGAAGACGGGGACGGGTCTCTGGTGGTG
GTTTCGGCCGCGGCGATGGACGTGCTGAGGGAGCTGGAGCACATGCATGC
TGCCTCGTGGGAGCGCGAGCAGCGCGAGAGGTCTCTCGTGGCCCGGCTGG
AGAACGAGGGGAGGGCGCTCCAAGAGGCCGAGGGCGCCAGGAGGGACGCG
GAAAGCGCGGCGCGCGCGGCGGCGGCGGAGGCGGAACAACTCGCTGTCAA
GGTCGCTGCCTCGTGGGAGCGCGAGCAGCGCGAGAGGTCTCTCGTGGCCC
GGCTGGAGAACGAGGGGAGGGCGCTCCAAGAGGCCGAGGGCGCCAGGAGG
GACGCGGAAAGCGCGGCGCGCGCGGCGGCGGCGGAGGCGGAACAACTCGC
TGTCAAGGTC
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