mRNA_S-firma_M_contig964.20639.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig964.20639.1 vs. uniprot
Match: D8LBT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT6_ECTSI) HSP 1 Score: 347 bits (891), Expect = 1.650e-101 Identity = 328/695 (47.19%), Postives = 370/695 (53.24%), Query Frame = 2
Query: 98 SCRRDVRDLRRQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLEAERKAAAQLRRFRDTLQAAAASDKKSIARLQAELCKGAPGSRLLERARCLKRAVERLEGQSNAQALALSAKTAELEGSRQEARALAAALGARKE-ASLPGCGVKGPVTVDELLEMGRAKLMNHDLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGARAESLQIE---LHACTAXXXXXXXXXXXXXXXXRGSNDSLHRAKQQRLEELEDAEREKRRLGDLLEKEQALQTTLREEVAAAREKLRVAVAERGELLRGLQQAKVFNDELAKGKERAEEREREACARCVDVRDGKLALQRALLEQLSASRAEVREERERCQQAEATLSRLAQAAAARSRNRTLPVSPSENDVGRGDGTCSSSAASSSEIGGDRDSSAGAAPPSESF---------RQRDTLVQDYLGKEGAEQFLSDWDEERSSTSSLSSSPPPSPHPLSPVSASLVGGGSTGLLGGPKVQHLLRDDE-----------RRSGSIKRSPPLPPAPPAVSPADGERRHNNTG------APGRGREQLPAAGLTAKIG-------LGDPGLERWASSMVALGRAAARAG 2071
SCRR+VR+LR QC LEAERK+ LRR RD LQ AAA+D+KSI RLQ +LCKG+P SRLL++ARCLKR VE LE +S QA ALSAKTAELE SR+EARALAAALG R E ASL G GPVTVDELLE+GRAKLMNHDLAL XXXXXXXXXXXXXXXXXXXXXXXXXXXX L A S +SL+RA QQRLEELE RE RRL LL++E ALQ LRE+V AA+E+LRVAVAERGEL+RGL+QAKVFNDELAKGKE+AEERER ACA+C+D ++GKLALQRALLEQLSASRAE+REE++RCQ+AEATL RLA +AA RSRNR LP P E+D G D S S S + +R A P + S R RDTLVQDYLG+EGAEQFLSDWDEERSS SSLS S P PLS S G S G + LR + P L + + A H G AP RG E AA L DP L+ W SMVALG+ A RAG
Sbjct: 9 SCRREVRELRLQCRKLSSSNDELKLAADARRKEACASRRRADAAQKELEAERKSGVVLRRVRDALQVAAAADRKSIDRLQGQLCKGSPSSRLLDKARCLKRTVEELESKSTEQAEALSAKTAELEASRREARALAAALGVRAEKASLAGVAT-GPVTVDELLEVGRAKLMNHDLALGMARLSEASGVLASEKQELEDLLVKKTAEIERCKAQTTEVQGELERERKVADGHRAAAAEANASTREARGLAETLRSKEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDARETALSTETQKNEHVAAQLGASKESLYRA-QQRLEELEGVTRENRRLEALLQEEAALQAALREDVNAAKEELRVAVAERGELMRGLRQAKVFNDELAKGKEKAEERERAACAQCIDTKEGKLALQRALLEQLSASRAELREEQKRCQKAEATLGRLADSAAKRSRNRGLP--PLEDD-GESDEGASVSFEESDGVSANRSIGASGTPTTASAAVTSSFEPPRPRDTLVQDYLGREGAEQFLSDWDEERSSASSLSFSSLPLQSPLSTGGRSHGGSRSASFATGRPTEVSLRAQPWTPPPXXXXXXXXXXXXEELPSLAGSSGQIPWASDSPGHTTKGSAPCPGAPERGEEPSTAAATAXXXXXXXXARRLRDPDLKEWTMSMVALGKVA-RAG 697 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig964.20639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig964.20639.1 >prot_S-firma_M_contig964.20639.1 ID=prot_S-firma_M_contig964.20639.1|Name=mRNA_S-firma_M_contig964.20639.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=904bp MAEADASCRRDVRDLRRQCQNLSKTNEELKSAADAARVEASAARKRAAAAback to top mRNA from alignment at S-firma_M_contig964:12502..21273+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig964.20639.1 ID=mRNA_S-firma_M_contig964.20639.1|Name=mRNA_S-firma_M_contig964.20639.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=8772bp|location=Sequence derived from alignment at S-firma_M_contig964:12502..21273+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig964:12502..21273+ >mRNA_S-firma_M_contig964.20639.1 ID=mRNA_S-firma_M_contig964.20639.1|Name=mRNA_S-firma_M_contig964.20639.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=5424bp|location=Sequence derived from alignment at S-firma_M_contig964:12502..21273+ (Sphaerotrichia firma Sfir_13m male)back to top |