mRNA_S-firma_M_contig9615.20612.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9615.20612.1
Unique NamemRNA_S-firma_M_contig9615.20612.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9615.20612.1 vs. uniprot
Match: D7G3I0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 5.460e-9
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  254 GNPYLAVRDYITATSCFDLTLKTHPWLEQEDVYLS 358
            GN YLAVRDY TATSCFDL LKTHP  +QED+YLS
Sbjct:   11 GNAYLAVRDYGTATSCFDLALKTHPGSDQEDIYLS 45
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9615.20612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3I0_ECTSI5.460e-980.00Calponin-homology (CH) domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9615contigS-firma_M_contig9615:2043..3614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size364
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9615.20612.1prot_S-firma_M_contig9615.20612.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9615 2642..3614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828797.7668188-UTR-S-firma_M_contig9615:2042..20991622828797.7668188-UTR-S-firma_M_contig9615:2042..2099Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9615 2043..2099 +
1697105168.7928317-UTR-S-firma_M_contig9615:2042..20991697105168.7928317-UTR-S-firma_M_contig9615:2042..2099Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9615 2043..2099 +
1622828797.7820802-UTR-S-firma_M_contig9615:2508..26411622828797.7820802-UTR-S-firma_M_contig9615:2508..2641Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9615 2509..2641 +
1697105168.810738-UTR-S-firma_M_contig9615:2508..26411697105168.810738-UTR-S-firma_M_contig9615:2508..2641Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9615 2509..2641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828797.8043535-CDS-S-firma_M_contig9615:2641..27051622828797.8043535-CDS-S-firma_M_contig9615:2641..2705Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9615 2642..2705 +
1697105168.8250418-CDS-S-firma_M_contig9615:2641..27051697105168.8250418-CDS-S-firma_M_contig9615:2641..2705Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9615 2642..2705 +
1622828797.8250442-CDS-S-firma_M_contig9615:3504..36141622828797.8250442-CDS-S-firma_M_contig9615:3504..3614Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9615 3505..3614 +
1697105168.8421109-CDS-S-firma_M_contig9615:3504..36141697105168.8421109-CDS-S-firma_M_contig9615:3504..3614Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9615 3505..3614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9615.20612.1

>prot_S-firma_M_contig9615.20612.1 ID=prot_S-firma_M_contig9615.20612.1|Name=mRNA_S-firma_M_contig9615.20612.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=58bp
MRLLRGWGQEDGAAWPARQSGGNPYLAVRDYITATSCFDLTLKTHPWLEQ
EDVYLSV*
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mRNA from alignment at S-firma_M_contig9615:2043..3614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9615.20612.1 ID=mRNA_S-firma_M_contig9615.20612.1|Name=mRNA_S-firma_M_contig9615.20612.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at S-firma_M_contig9615:2043..3614+ (Sphaerotrichia firma Sfir_13m male)
CGGCGCGGCGCCGCGGAAAGGATTGAGTCGTCTCTGGGCGGAGATGCCAA
TGTTTGTGTGAGGTTGTTATGGCTGTCAGGCGTTGTTGCAGGAAATGACT
AGAACGGCAAGCGATCGAGAGAGGGATCGGAAGGAAAGCAGTGCGGAAGA
GAAGGCGTGAGTGACAAGTCGCCCTCCGCCTGGCACATCCCGCTGCTGTT
AATTCGGGGGGGATGGTGCTAACAAGCCGCGACCTGCCTTCAACATAAAC
CGCTCTCCCATGTGCACCGAAGGCGCAGTGTTAGGTTCCCTCTAGTGCGC
AGCCAAGATGGCCAATGCGGGCTTGTTCCCCGTGTTCCCTGTTCAAGGCA
TGAGCGTTAAAACGAACACAGGATGGCGCGCCAGCCGAAAGCCCCCCCGA
CCGCATAACTCCGACGTGCATGCGTAACTTTCCCACCCTCACCTTCTACA
CGAAAATACTGTGAAGCCTCAGGAGGTGACAGCTCTGCAGCCTTCCTTGG
ACATCGCGTGTGGAGCCTGACCTGCCGCACGAGACTACCCTACTTGGCCA
ACGGTCACGAGCTGGCTGTCCGAACCAGCCTGCATCTGTCCTGTCGTAAA
TGCGGCTGCTGCGGGGCTGGGGGCAGGAAGACGGAGCAGCGTGGCCCGCC
AGGCAGTCGGGGGGTGAGTTGGTTGAAGCCATCGGGCGGTTTGTTGGTTG
GGGTTTTGACCATGGGGACAGGGTGCGCTGCTGCAGCATCTTGAGCCAGG
TGTAGATTGCGTCCAATTGGGCAGCGAGCAACGAGATCGAGTTTCTTTGT
TTTGTCGATCAAGATCAAGATCGAGATCCATCCATGCGCACGTCCGCTCA
AGCCAGAAAAGAAAGCACACGAAGTATCTCAGGAGTATTCCTTAACACGT
GCAGAGCGGTACAGAGTTGTTGTTTTCGGCGTATTGCACAGGGTTAGTCT
AGGTATTCGCTCTGCCGTTCCCTTGCATGCACGCGTGCTTTCCGCAGTGC
CTCTATATTATATTTATTTTTTTTTATTGTATTTTATTTTTCCTCCCATT
AGTGTTTCTGTCGTCTGCCCCACTGGCCCCTATCCTCCACTACGACTAGC
CTACGACACACCCGGGGTCACACAGGAGGGGGGGGGGGTGGAGCCTCTCC
TACGGTACCTGCCTGTGCATGTTTGTAGCGAGCAGGGTTCAACACTCCCC
ACCCGGGTGCGTATTTCGGTGGTAGACTTCGGTCTCGTGGTTCCGCCGGT
ACAGTACTGCGGCGACGAGATCCGTTCGAGTTTTTGCGTGATTGAAAAAA
AAACTCCCGCAAACGCCACAATCAGCGCCACCGACCGTACGACGTGACCG
TACACAACACTCGGGGCTGGCACGTATCTATGTATGTATCATGTTCTCTT
TCGGAATGGCCGTCGTGTCGTCGACTCCACTTCCTTTCTCTCCCCCTCCC
CCGGGTTCGCAGGAAACCCCTACCTTGCCGTCAGGGACTACATCACAGCC
ACCAGCTGCTTCGACCTCACCCTCAAGACTCACCCGTGGTTGGAGCAGGA
AGACGTCTACCTGTCTGTCTAA
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Coding sequence (CDS) from alignment at S-firma_M_contig9615:2043..3614+

>mRNA_S-firma_M_contig9615.20612.1 ID=mRNA_S-firma_M_contig9615.20612.1|Name=mRNA_S-firma_M_contig9615.20612.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=348bp|location=Sequence derived from alignment at S-firma_M_contig9615:2043..3614+ (Sphaerotrichia firma Sfir_13m male)
ATGCGGCTGCTGCGGGGCTGGGGGCAGGAAGACGGAGCAGCGTGGCCCGC
CAGGCAGTCGGGGGATGCGGCTGCTGCGGGGCTGGGGGCAGGAAGACGGA
GCAGCGTGGCCCGCCAGGCAGTCGGGGGGAAACCCCTACCTTGCCGTCAG
GGACTACATCACAGCCACCAGCTGCTTCGACCTCACCCTCAAGACTCACC
CGTGGTTGGAGCAGGAAGACGTCTACCTGTCTGTCTAAGAAACCCCTACC
TTGCCGTCAGGGACTACATCACAGCCACCAGCTGCTTCGACCTCACCCTC
AAGACTCACCCGTGGTTGGAGCAGGAAGACGTCTACCTGTCTGTCTAA
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