mRNA_S-firma_M_contig954.20529.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig954.20529.1
Unique NamemRNA_S-firma_M_contig954.20529.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig954.20529.1 vs. uniprot
Match: D8LJ60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ60_ECTSI)

HSP 1 Score: 483 bits (1242), Expect = 3.230e-166
Identity = 268/316 (84.81%), Postives = 281/316 (88.92%), Query Frame = 1 
Query:  118 IDPREMVEQQEDGLDVGIEPGAGLGY-AMDGDARIISREIYQGKTFDDWDDMEANVRRLARKAGFKVVKDSKGEKRNDGRQKRIVWKCDCAGIKTPRKGSGKDDLSPAPSRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLTGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXXXXXVVASLPGSRVNDPVFRDSMTIIGGALRQALESGADAPGLKRRCEGFAEGIRKTTVAAGDGSNLDPSRKRLRMEGDGSP 1062
            ++ R + E +E GLDVGIEPGAGLGY  +DG+ RIISREIYQGKTFDDWDDME NVRRLARKAGFK   DSKGEKR DGRQKRIVWKCDCAG+KTPRKG  KD      SRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRL GPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXX    VV SLP SR+NDPVFR+SMTIIG ALRQALESGADA GLKRRCEGFAEG+RKTTVAA D  N DPSRKR+R++G GSP
Sbjct:   61 MEQRHVAEPEEPGLDVGIEPGAGLGYPGLDGEMRIISREIYQGKTFDDWDDMEGNVRRLARKAGFK---DSKGEKRADGRQKRIVWKCDCAGMKTPRKGQ-KDLTHDQTSRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLAGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXSPGSVVGSLPSSRINDPVFRESMTIIGNALRQALESGADAAGLKRRCEGFAEGLRKTTVAATD--NTDPSRKRIRVDG-GSP 369
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig954.20529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ60_ECTSI3.230e-16684.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig954contigS-firma_M_contig954:7650..10983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAR1 DNA binding domain
Ec32 orthologEc-02_004880.1
Exons4
Model size1225
Cds size1224
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig954.20529.1prot_S-firma_M_contig954.20529.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig954 7650..10983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828789.049358-CDS-S-firma_M_contig954:7649..82011622828789.049358-CDS-S-firma_M_contig954:7649..8201Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 7650..8201 -
1697105163.3759165-CDS-S-firma_M_contig954:7649..82011697105163.3759165-CDS-S-firma_M_contig954:7649..8201Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 7650..8201 -
1622828789.0641046-CDS-S-firma_M_contig954:8735..89241622828789.0641046-CDS-S-firma_M_contig954:8735..8924Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 8736..8924 -
1697105163.3881695-CDS-S-firma_M_contig954:8735..89241697105163.3881695-CDS-S-firma_M_contig954:8735..8924Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 8736..8924 -
1622828789.0781217-CDS-S-firma_M_contig954:9423..95851622828789.0781217-CDS-S-firma_M_contig954:9423..9585Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 9424..9585 -
1697105163.3999503-CDS-S-firma_M_contig954:9423..95851697105163.3999503-CDS-S-firma_M_contig954:9423..9585Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 9424..9585 -
1622828789.0909102-CDS-S-firma_M_contig954:10662..109831622828789.0909102-CDS-S-firma_M_contig954:10662..10983Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 10663..10983 -
1697105163.4121146-CDS-S-firma_M_contig954:10662..109831697105163.4121146-CDS-S-firma_M_contig954:10662..10983Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 10663..10983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig954.20529.1

>prot_S-firma_M_contig954.20529.1 ID=prot_S-firma_M_contig954.20529.1|Name=mRNA_S-firma_M_contig954.20529.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=408bp
TRERSPKKNQRLNLASRGWASHSGVMNPVGSPFMSPGPAIDPREMVEQQE
DGLDVGIEPGAGLGYAMDGDARIISREIYQGKTFDDWDDMEANVRRLARK
AGFKVVKDSKGEKRNDGRQKRIVWKCDCAGIKTPRKGSGKDDLSPAPSRE
RPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLTGPLRAGRQDPVLP
EELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLS
GQEAPRRRAAAAAAAAAAAAAAAPAAVVASLPGSRVNDPVFRDSMTIIGG
ALRQALESGADAPGLKRRCEGFAEGIRKTTVAAGDGSNLDPSRKRLRMEG
DGSPPPGSVVGAVAAAAMAGIGVAAPPAPVPAPVAGLAAPVAPPVLPAMP
PGSGMPSP
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mRNA from alignment at S-firma_M_contig954:7650..10983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig954.20529.1 ID=mRNA_S-firma_M_contig954.20529.1|Name=mRNA_S-firma_M_contig954.20529.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3334bp|location=Sequence derived from alignment at S-firma_M_contig954:7650..10983- (Sphaerotrichia firma Sfir_13m male)
ACGCGCGAGAGATCTCCAAAAAAAAACCAACGTTTGAATCTTGCCTCGAG
AGGGTGGGCCTCACACAGCGGCGTCATGAATCCTGTTGGAAGCCCCTTTA
TGAGTCCCGGACCAGCCATCGATCCGCGTGAGATGGTCGAGCAGCAGGAG
GACGGCCTCGACGTGGGCATCGAACCCGGGGCGGGGCTCGGATACGCTAT
GGACGGGGACGCGAGGATCATCTCCCGCGAGATCTACCAGGGAAAAACGT
TTGACGACTGGGACGACATGGAAGCGAACGTCCGCCGCCTGGCTCGCAAA
GCGGGCTTCAAGGTGGTGAAGGTGAGATCTGGAAAAAAGACCGGAGAGAC
GGAGAGAGTCCGCTGAAAGGAGACGAAGCGGAATGTGAGCAGAGCCCTGA
AAAAATAGTAAACAAATACTTCGAAGTATCGAACGTATCGATGAAGTAAT
TTTTGGGGCCGAGATGTATGCGCATGTCGAAGAAGATGCCCTTGGTGAAG
TACTTCGTATGTTGAGCTTTGATGCATTCAGTGTCTTTTTTGCGCTGACG
TCGGTGCTGCTGCACACATGCCTGTGCGGGAGCCTGGTGCACGCTTTCTC
CACGTACGATATGTAGATATCTCACTCACACACGCTGGGTACCCAAGAGC
GACAGCGGAGAGAATTCAGCGATCACAGAGGCGACACCATCTTGTCGACA
TAGTCTACAGCAGTGATTCGGCCTGCCTCTTGGAAGATTGACAAACCTTG
TGGTGATCCGGGTTACAATAGGCGTAAGGCGTGTAATAATGCTTAAGAGT
ATCAGTAAAGTATGATGAAGTCAGGCCCTTGCCCGGATCATGGAAGGGGA
AGCGCGGATTTCACTCACCGCTTGGTTCAAAATCCACCTTCTTTGGCGAA
CAGCCTAAGTTGATAATTCGCTCAAGGTGCTTGACGAAGTCGTCAATACA
AAAGTAGTGTACATTAGCCATTGGCCTCTTGAGGTTACCAAAGTAATTCA
CGGTGCAGGGGGGCGCGTGTGACGCATCTCGAAACCCACACCACGAACTA
CAGAACGTTTACAAGTACCGTAGTCAGCAATCTTTCTATTGTAGATACCA
TCCAGCACACTAGCGGCGTCCACCATCATGCTGATGTTGGCACGTGGTCT
CTCTCTCTGTATCTACGTATCTGCCTCTTCTGCGGATAGTTTTCGTGTGA
CCACGGCAGGCGTCTACCTCGGTTGGACCGACCCGGATGGAAGGAAATAT
TTGTTTCTGACCTCAAAGATACAGCGTGAAACATCAACCGGTACATCCTA
CCTTCGGCGGTGTTGTTGCGTGTACTATACCTACTCTGCACCTCCTTCGT
TTCCGGTTGCACACCGAACGCCCCCACCCCGTCCCACCGCCTCCGCAGGA
CTCGAAGGGCGAGAAGCGCAACGACGGGAGGCAGAAGCGAATCGTGTGGA
AGTGCGACTGCGCCGGGATCAAGACTCCCCGCAAGGGGTCAGGAAAGGAC
GACCTGTCGCCGGCGCCCTCTCGGGAGCGGCCGTCCAAGCGCCAGGGTTG
CCCCTTTCAGGTACGGCCAGTGTTGCGATGTTTGAAGGACGGGTTAGCAG
CGATCGCTGGGTAGATAGAGGCTCGCCGTGGAGGGTTGCGTGACTGGTGC
GGTCGTCAGGCGTGCGCGCGTGGTGCGGTTCTTTGGGGTCTTGGAGAGAG
CGGGGCTCGAGAGAGAGAGAGAGAGACCGAGTTTGCTGAGAGAACCGGCT
CTCTATTTTATCTTGGATGTTCGAAAAAAGCACATGTACGAAGCAGTATC
ATACCACGCATCCGTGGCAACCCTCTTCGTATCGTGCGCTCATCATGATC
CAAGCTGACGCAAGTGTTTCTGCTTGTGCACATCGTGAGCGCCAAAATTC
CTCGCGTATTCTGCGCGCGTGGAGAGTCCAGAAGGCGAAGCAGTGTGCCC
CCGCCCCGGTTTCTCTCTGCCGCTGTATTCCACTCACGCACGTCCTCCCC
GTGTTGTCCGTCCTTCCCGCCCACGAACGAATATCAATGCCGCCGTAACA
ACCACTTAGATCAACGCCACGTGGCCCGAGAAGTGCCTCCAACCCGGAGT
GACGAGGTGCACCCTCGAGCACAACCACCGACTCACGGGGCCCCTTCGCG
CGGGCAGGCAGGACCCGGTCCTTCCGGAGGAGCTCCTCGCGGAGCACGTG
AGCGCGCTCAAGGAGTGGGCCAGGATTCCCGTGGCGGTTCGCACGCAGGT
GCGGGTGTTGTGTGTTTGCGTCCGAGCGCCATATTTTATCCCGCCTGTGA
ATCGGGGAGGCGTACGCTTTCTTGCGTCCCAGCCTTTCTTCCTCGGACCG
CCCTGGAAGTTCATACTGCTGCGGAACACACGGACGTGGTTGCTTTACAA
TCAGTCCCTGGGGTGGGGGATGGGGGATGGGGGGGTACGCTGCCCAGCGG
GGCACCGCAACGATGTCTGTGTTCCTTCACTCGGCGCATGATAGTTTGGT
GTTCGCGAGATATCGGAGAGCGTCGGTCTGCACCCCAGCAGTTGCAGCCT
TTGTTTTTTGCGGCGTCAAGCGCCGTATTCTCGCCATAGTACTGTTCGCC
GGCGATGGCTGACCAGGTGAGGTTGAGGTAGACCCTCTCCCTTCCTGTCG
CGGAACATTTTTCTCTTCAGCGGCAGAATACAACTTCTCCCACATGGGCA
CACCCACTCGCGCTCACATGTCCAACCTGCGATGCCCCGCCTTGTCCGAC
GTCTCGCGCCTCTCCCTCCCCCAAACGGCCAGATGCAAATCTTGAGGCAC
GAGTTCTTCGAAGGCCGCCAGCTCTCCCTCGAGGCCCAGCGCTGCGTCCA
CACCCTGTCCGGCCAGGAAGCCCCCCGCCGCCGCGCCGCCGCAGCCGCCG
CCGCAGCCGCAGCCGCCGCCGCCGCAGCCCCGGCCGCCGTCGTGGCCTCG
CTCCCGGGCTCCCGCGTGAACGACCCCGTGTTCCGCGACAGCATGACCAT
CATCGGCGGCGCCCTCCGGCAGGCCCTGGAGTCCGGCGCGGACGCCCCCG
GCCTCAAGCGGCGGTGCGAGGGCTTCGCGGAGGGGATCAGAAAGACCACG
GTTGCCGCCGGCGACGGCAGCAACTTGGACCCGTCGCGCAAACGACTGCG
CATGGAGGGCGACGGATCGCCGCCGCCCGGTAGCGTTGTTGGCGCCGTAG
CCGCGGCGGCGATGGCGGGCATAGGGGTGGCGGCGCCCCCGGCGCCGGTG
CCGGCCCCCGTTGCCGGGCTGGCGGCGCCGGTGGCGCCGCCCGTGCTGCC
GGCCATGCCCCCCGGTTCGGGCATGCCGTCGCCG
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Coding sequence (CDS) from alignment at S-firma_M_contig954:7650..10983-

>mRNA_S-firma_M_contig954.20529.1 ID=mRNA_S-firma_M_contig954.20529.1|Name=mRNA_S-firma_M_contig954.20529.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2448bp|location=Sequence derived from alignment at S-firma_M_contig954:7650..10983- (Sphaerotrichia firma Sfir_13m male)
ACGCGCGAGAGATCTCCAAAAAAAAACCAACGTTTGAATCTTGCCTCGAG
AGGGTGGGCCTCACACAGCGGCGTCATGAATCCTGTTGGAAGCCCCTTTA
TGAGTCCCGGACCAGCCATCGATCCGCGTGAGATGGTCGAGCAGCAGGAG
GACGGCCTCGACGTGGGCATCGAACCCGGGGCGGGGCTCGGATACGCTAT
GGACGGGGACGCGAGGATCATCTCCCGCGAGATCTACCAGGGAAAAACGT
TTGACGACTGGGACGACATGGAAGCGAACGTCCGCCGCCTGGCTCGCAAA
GCGGGCTTCAAGGTGGTGAAGACGCGCGAGAGATCTCCAAAAAAAAACCA
ACGTTTGAATCTTGCCTCGAGAGGGTGGGCCTCACACAGCGGCGTCATGA
ATCCTGTTGGAAGCCCCTTTATGAGTCCCGGACCAGCCATCGATCCGCGT
GAGATGGTCGAGCAGCAGGAGGACGGCCTCGACGTGGGCATCGAACCCGG
GGCGGGGCTCGGATACGCTATGGACGGGGACGCGAGGATCATCTCCCGCG
AGATCTACCAGGGAAAAACGTTTGACGACTGGGACGACATGGAAGCGAAC
GTCCGCCGCCTGGCTCGCAAAGCGGGCTTCAAGGTGGTGAAGGACTCGAA
GGGCGAGAAGCGCAACGACGGGAGGCAGAAGCGAATCGTGTGGAAGTGCG
ACTGCGCCGGGATCAAGACTCCCCGCAAGGGGTCAGGAAAGGACGACCTG
TCGCCGGCGCCCTCTCGGGAGCGGCCGTCCAAGCGCCAGGGTTGCCCCTT
TCAGGACTCGAAGGGCGAGAAGCGCAACGACGGGAGGCAGAAGCGAATCG
TGTGGAAGTGCGACTGCGCCGGGATCAAGACTCCCCGCAAGGGGTCAGGA
AAGGACGACCTGTCGCCGGCGCCCTCTCGGGAGCGGCCGTCCAAGCGCCA
GGGTTGCCCCTTTCAGATCAACGCCACGTGGCCCGAGAAGTGCCTCCAAC
CCGGAGTGACGAGGTGCACCCTCGAGCACAACCACCGACTCACGGGGCCC
CTTCGCGCGGGCAGGCAGGACCCGGTCCTTCCGGAGGAGCTCCTCGCGGA
GCACGTGAGCGCGCTCAAGGAGTGGGCCAGGATTCCCGTGGCGGTTCGCA
CGCAGATCAACGCCACGTGGCCCGAGAAGTGCCTCCAACCCGGAGTGACG
AGGTGCACCCTCGAGCACAACCACCGACTCACGGGGCCCCTTCGCGCGGG
CAGGCAGGACCCGGTCCTTCCGGAGGAGCTCCTCGCGGAGCACGTGAGCG
CGCTCAAGGAGTGGGCCAGGATTCCCGTGGCGGTTCGCACGCAGATGCAA
ATCTTGAGGCACGAGTTCTTCGAAGGCCGCCAGCTCTCCCTCGAGGCCCA
GCGCTGCGTCCACACCCTGTCCGGCCAGGAAGCCCCCCGCCGCCGCGCCG
CCGCAGCCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCAGCCCCGGCCGCC
GTCGTGGCCTCGCTCCCGGGCTCCCGCGTGAACGACCCCGTGTTCCGCGA
CAGCATGACCATCATCGGCGGCGCCCTCCGGCAGGCCCTGGAGTCCGGCG
CGGACGCCCCCGGCCTCAAGCGGCGGTGCGAGGGCTTCGCGGAGGGGATC
AGAAAGACCACGGTTGCCGCCGGCGACGGCAGCAACTTGGACCCGTCGCG
CAAACGACTGCGCATGGAGGGCGACGGATCGCCGCCGCCCGGTAGCGTTG
TTGGCGCCGTAGCCGCGGCGGCGATGGCGGGCATAGGGGTGGCGGCGCCC
CCGGCGCCGGTGCCGGCCCCCGTTGCCGGGCTGGCGGCGCCGGTGGCGCC
GCCCGTGCTGCCGGCCATGCCCCCCGGTTCGGGCATGCCGTCGCCGATGC
AAATCTTGAGGCACGAGTTCTTCGAAGGCCGCCAGCTCTCCCTCGAGGCC
CAGCGCTGCGTCCACACCCTGTCCGGCCAGGAAGCCCCCCGCCGCCGCGC
CGCCGCAGCCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCAGCCCCGGCCG
CCGTCGTGGCCTCGCTCCCGGGCTCCCGCGTGAACGACCCCGTGTTCCGC
GACAGCATGACCATCATCGGCGGCGCCCTCCGGCAGGCCCTGGAGTCCGG
CGCGGACGCCCCCGGCCTCAAGCGGCGGTGCGAGGGCTTCGCGGAGGGGA
TCAGAAAGACCACGGTTGCCGCCGGCGACGGCAGCAACTTGGACCCGTCG
CGCAAACGACTGCGCATGGAGGGCGACGGATCGCCGCCGCCCGGTAGCGT
TGTTGGCGCCGTAGCCGCGGCGGCGATGGCGGGCATAGGGGTGGCGGCGC
CCCCGGCGCCGGTGCCGGCCCCCGTTGCCGGGCTGGCGGCGCCGGTGGCG
CCGCCCGTGCTGCCGGCCATGCCCCCCGGTTCGGGCATGCCGTCGCCG
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