mRNA_S-firma_M_contig9511.20504.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI) HSP 1 Score: 306 bits (784), Expect = 7.010e-96 Identity = 154/162 (95.06%), Postives = 158/162 (97.53%), Query Frame = 1
Query: 28 SNGQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTANAAVNGGTD 513
SNGQPL+K EAVIKRSLLVGNFEAAVQCCM+TGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELG LVE SDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELK+ANAA+NGGTD
Sbjct: 382 SNGQPLTKEAEAVIKRSLLVGNFEAAVQCCMSTGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTD 543
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE) HSP 1 Score: 308 bits (789), Expect = 9.020e-95 Identity = 155/163 (95.09%), Postives = 160/163 (98.16%), Query Frame = 1
Query: 25 MSNGQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTANAAVNGGTD 513
MSNGQPLSK EAVIKRSLLVGNFEAAVQCCM+TGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELG LV+ASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWA+ELK+ANAA+NGGTD
Sbjct: 602 MSNGQPLSKEAEAVIKRSLLVGNFEAAVQCCMSTGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWADELKSANAAINGGTD 764
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK) HSP 1 Score: 197 bits (501), Expect = 5.710e-61 Identity = 98/146 (67.12%), Postives = 116/146 (79.45%), Query Frame = 1
Query: 58 EAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTANAA 495
E +IKR+LLVGNFEAAVQCC+ G MADA++LASCGGA+LWA TQA+YF +RPFL ++ IIKSELG LV A+ LG W+ETLAILSTYAK +EFP LCEALA+RLE EA D +A LCYMCAV VPKTV +W +L+ AN A
Sbjct: 18 EEMIKRALLVGNFEAAVQCCLKNGQMADALILASCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYMCAVNVPKTVGVWLRDLRAANLA 163
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA) HSP 1 Score: 195 bits (496), Expect = 4.960e-58 Identity = 103/157 (65.61%), Postives = 118/157 (75.16%), Query Frame = 1
Query: 22 SMSNGQPLSKA-GEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTAN 489
SM+ P++ A E VIKR+LLVGNFE AVQCC+ G MADA+++ASCGGADLWAKTQAQYF E RPFL +V+AII+SEL LV S L WQETLAILSTYAK EEFP LCE LA RLE+E+ D SA LCYMCAV V KTV+ W +EL N
Sbjct: 54 SMAPRDPVADAEAEEVIKRALLVGNFEQAVQCCLKNGQMADALVVASCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYMCAVNVHKTVQTWLDELHQVN 210
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN) HSP 1 Score: 192 bits (489), Expect = 1.510e-54 Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 1
Query: 34 GQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTAN 489
G PL A EA +K++LLVGNF+AAV+ C ATG +ADA+LLASCGGA+LW +T+A+YF S +PFL VV AII +ELG LV ASDL +W+ETLAILSTY K +EFP LCEAL RLE EA D K+A LCYMCAV VPKTV+ W ++ A+
Sbjct: 577 GAPLDAAAEADVKQALLVGNFDAAVESCFATGALADALLLASCGGAELWERTRARYFDISSKAKPFLGVVRAIITNELGALVAASDLRKWEETLAILSTYGKSDEFPALCEALGGRLEHEARDDKAAALCYMCAVNVPKTVKFWIDDFNAAS 728
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A1E7FBK0_9STRA (WD40 repeat-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBK0_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.780e-53 Identity = 95/170 (55.88%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 4 SMSMSMSMSNGQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTANAAVNGGTD 513
SMS+S N +S+ + ++K++L+VGNFEAAV CC TGN+ADA++LASCGGADLWAKTQ +YF +S +RPFL VV AII++EL L+++SDL WQETLAILSTY K +EFP LC AL RLE E+GD SA+LC+MCA+ + K ++ W +L +NA+ +G D
Sbjct: 509 SMSLSDGSHNDTGMSQPTQDIVKQALMVGNFEAAVDCCFRTGNLADALVLASCGGADLWAKTQERYFESQSSKRPFLSVVGAIIRNELPSLIQSSDLATWQETLAILSTYGKSDEFPQLCVALGDRLE-ESGDHSSASLCFMCALSLNKAIKYWRTQLANSNASKDGDMD 677
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.170e-50 Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 1
Query: 1 MSMSMSMSMSNGQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELK 480
+S+S S+ PL+ A EA +KR+LLVGNF+AAV+ C G +ADA+LLASCGGA+LW KT+A+YF + + +RPFL VV AII +EL LV+ +DL +W+ETLAILSTY K EEFP LCEAL RLE E D+ +A+LCYMCAV V KTV W + K
Sbjct: 525 LSISSDRSIEEKSPLTPAAEADVKRALLVGNFDAAVEGCFKNGALADALLLASCGGAELWEKTRARYFEKAARKRPFLGVVRAIITNELDQLVQTADLNKWEETLAILSTYGKSEEFPQLCEALGQRLENEKRDQTAASLCYMCAVNVAKTVSFWISDYK 684
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A6V2GAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GAE0_9STRA) HSP 1 Score: 182 bits (462), Expect = 3.200e-50 Identity = 89/149 (59.73%), Postives = 117/149 (78.52%), Query Frame = 1
Query: 43 LSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTAN 489
+S+ E ++K +LLVGNFEAAV CC GN+ADA++LASCGGA+LWAKTQA+YFARE+ +RPFL +V+A+I ++L LV ASD +WQETLAILSTY K EEFP LC AL +RLE AGD SA+LC+MCA+ + + V+ W +L+ A+
Sbjct: 507 MSEKAEDIVKEALLVGNFEAAVDCCFRNGNLADALVLASCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A7S4VZF3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZF3_9STRA) HSP 1 Score: 182 bits (462), Expect = 4.290e-50 Identity = 89/149 (59.73%), Postives = 117/149 (78.52%), Query Frame = 1
Query: 43 LSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTAN 489
+S+ E ++K +LLVGNFEAAV CC GN+ADA++LASCGGA+LWAKTQA+YFARE+ +RPFL +V+A+I ++L LV ASD +WQETLAILSTY K EEFP LC AL +RLE AGD SA+LC+MCA+ + + V+ W +L+ A+
Sbjct: 507 MSEKAEDIVKEALLVGNFEAAVDCCFRNGNLADALVLASCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Match: A0A7S0UP54_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UP54_9STRA) HSP 1 Score: 179 bits (453), Expect = 5.620e-50 Identity = 89/156 (57.05%), Postives = 117/156 (75.00%), Query Frame = 1
Query: 31 NGQP-LSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLLASCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGGLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKTANAA 495
+G P +S+ + V+K +L+VGNFEAAV CC TGN+ADA++LAS GG DLWAKTQ +YF ++ +RPFL VV AII+++LG LVE S+L WQETLAILSTY K +EFP LC AL +L+ AGD SA+LCYMCA+ + K V+ W +L+ NA+
Sbjct: 69 HGNPDMSQTTQNVVKEALMVGNFEAAVDCCFRTGNLADALVLASSGGGDLWAKTQERYFESQAKKRPFLSVVGAIIQNDLGSLVENSNLSNWQETLAILSTYGKSDEFPALCVALGDKLDA-AGDHSSASLCYMCALSLNKAVKHWRTKLEEQNAS 223 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9511.20504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9511.20504.1 >prot_S-firma_M_contig9511.20504.1 ID=prot_S-firma_M_contig9511.20504.1|Name=mRNA_S-firma_M_contig9511.20504.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=171bp MSMSMSMSMSNGQPLSKAGEAVIKRSLLVGNFEAAVQCCMATGNMADAMLback to top mRNA from alignment at S-firma_M_contig9511:549..2480+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9511.20504.1 ID=mRNA_S-firma_M_contig9511.20504.1|Name=mRNA_S-firma_M_contig9511.20504.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at S-firma_M_contig9511:549..2480+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9511:549..2480+ >mRNA_S-firma_M_contig9511.20504.1 ID=mRNA_S-firma_M_contig9511.20504.1|Name=mRNA_S-firma_M_contig9511.20504.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1026bp|location=Sequence derived from alignment at S-firma_M_contig9511:549..2480+ (Sphaerotrichia firma Sfir_13m male)back to top |