mRNA_S-firma_M_contig9482.20464.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_M_contig9482.20464.1
Unique Name	mRNA_S-firma_M_contig9482.20464.1
Type	mRNA
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)

Homology

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BLAST of mRNA_S-firma_M_contig9482.20464.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.530e-36
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1

Query:    1 YGSYLRTYSTCHLRFSRAVIFKAFRQLAEQGLLRSAESGTGGGREAHPMLHCRFRSRFDLDQVRRALEKSVIAAPTNVTRWCK 249
            YGSYLR + TCHLRFSRAVIFKAF QL EQG LRSAE GTGGGREAHP+LHCRFRS FD++QV RALEK+VIAAPTNV RWCK
Sbjct:  420 YGSYLREFRTCHLRFSRAVIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVIAAPTNVARWCK 502

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BLAST of mRNA_S-firma_M_contig9482.20464.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.660e-35
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1

Query:    1 YGSYLRTYSTCHLRFSRAVIFKAFRQLAEQGLLRSAESGTGGGREAHPMLHCRFRSRFDLDQVRRALEKSVIAAPTNVTRWCK 249
            YGSYLR + TCHLRFSRA+IFKAF QL EQG LRSAE GTGGGREAHP+LHCRFRS FD++QV RALEK+VI APTNV RWCK
Sbjct:  461 YGSYLREFRTCHLRFSRAMIFKAFSQLVEQGALRSAEPGTGGGREAHPVLHCRFRSHFDIEQVERALEKNVINAPTNVARWCK 543

[Close]

BLAST of mRNA_S-firma_M_contig9482.20464.1 vs. uniprot
Match: A0A6H5K6K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.000e-15
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1

Query:  103 SAESGTGGGREAHPMLHCRFRSRFDLDQVRRALEKSVIAAPTNVTRWCK 249
            S E+  GGGREAHP+LHCRFRS FD+ QV RALEK+VIAAPTNV RWCK
Sbjct:  139 SLETLNGGGREAHPVLHCRFRSHFDIGQVERALEKNVIAAPTNVARWCK 187

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9482.20464.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9482.20464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G0P2_ECTSI	1.530e-36	83.13	Origin recognition complex subunit 4 n=1 Tax=Ectoc...	[more]
A0A6H5JJU9_9PHAE	4.660e-35	80.72	Origin recognition complex subunit 4 n=1 Tax=Ectoc...	[more]
A0A6H5K6K5_9PHAE	1.000e-15	77.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9482	contig	S-firma_M_contig9482:2219..3760 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	147.1
Seed ortholog evalue	3.7e-33
Seed eggNOG ortholog	2880.D7G0P2
Preferred name	ORC4
KEGG ko	ko:K02606
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG Module	M00284
GOs	GO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902292,GO:1902299,GO:1902315,GO:1902595,GO:1902597,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	DNA replication origin binding
EggNOG OGs	KOG2228@1,KOG2228@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03032
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-14_001730.1
Exons	2
Model size	874
Cds size	261
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9482.20464.1	prot_S-firma_M_contig9482.20464.1	Sphaerotrichia firma Sfir_13m male	polypeptide	S-firma_M_contig9482 2831..3760 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828781.9596999-UTR-S-firma_M_contig9482:2218..2830	1622828781.9596999-UTR-S-firma_M_contig9482:2218..2830	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9482 2219..2830 -
1697105159.2310877-UTR-S-firma_M_contig9482:2218..2830	1697105159.2310877-UTR-S-firma_M_contig9482:2218..2830	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9482 2219..2830 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828781.9726074-CDS-S-firma_M_contig9482:2830..2972	1622828781.9726074-CDS-S-firma_M_contig9482:2830..2972	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9482 2831..2972 -
1697105159.2452798-CDS-S-firma_M_contig9482:2830..2972	1697105159.2452798-CDS-S-firma_M_contig9482:2830..2972	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9482 2831..2972 -
1622828781.986929-CDS-S-firma_M_contig9482:3641..3760	1622828781.986929-CDS-S-firma_M_contig9482:3641..3760	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9482 3642..3760 -
1697105159.2552693-CDS-S-firma_M_contig9482:3641..3760	1697105159.2552693-CDS-S-firma_M_contig9482:3641..3760	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9482 3642..3760 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_M_contig9482:2219..3760-
coding sequence from alignment at S-firma_M_contig9482:2219..3760-

protein sequence of mRNA_S-firma_M_contig9482.20464.1

>prot_S-firma_M_contig9482.20464.1 ID=prot_S-firma_M_contig9482.20464.1|Name=mRNA_S-firma_M_contig9482.20464.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=87bp
YGSYLRTYSTCHLRFSRAVIFKAFRQLAEQGLLRSAESGTGGGREAHPML
HCRFRSRFDLDQVRRALEKSVIAAPTNVTRWCKHLE*

mRNA from alignment at S-firma_M_contig9482:2219..3760-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_M_contig9482.20464.1 ID=mRNA_S-firma_M_contig9482.20464.1|Name=mRNA_S-firma_M_contig9482.20464.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1542bp|location=Sequence derived from alignment at S-firma_M_contig9482:2219..3760- (Sphaerotrichia firma Sfir_13m male)
TACGGGTCCTACCTGAGGACGTACAGCACGTGTCACTTGCGCTTCTCCCG
GGCGGTGATCTTCAAAGCCTTCCGCCAGCTGGCCGAACAAGGCCTTTTAC
GATCGGCAGAGTCTGGAACGTGAGACAAGACCCTCTCGGCGGAGATAAAG
GGGTACTGCTGTAGATAGGATAGACTGGATGGGGGTGGTGCTGCCTCCGT
GCGTGAGTCCTTGCTTGCTTGTGCGTTTTTGTGTGCGTGTGTAGATTGAT
TGTCTCGCGGTGGAGACGACACACGAAGGTTAATGTTGTGTTTTTAGGGG
CGCTCTAGCTTGGACTAGAGGGCCAACCAGGCCGCAAGAGCCTGACCGCA
AGGTACAGCAGTCAGTAGATGTTTAGGACTCCACTGAAAGCTGGGGCGAC
CTCCCCGAAGTGTTCCGAAGAGGGTTGGTTGGCTCAACGAAAGGTACCAC
TCCTTGCGGAGAACACATTACAGAACATGACAGCACTACATATTATTTTA
CTTGCCATCCGACAAGTGCAGATGTATCCAACAAAATATTTACTCAACCT
GTCGTGCTCCTGTTTGACATATGACAATACTGCTGTTGATGCATGATGTA
CTCTTTGTCCCCGTACTAAACCGCGGGTGGGGGGTGGTGTTTTCTCTCTA
CTTCGTATTTAGGTACTAGACACGGGGTGGGCGTTCGCGTTGAGACGCTC
TCACTTTTTTGCCCAACGTCTTACGATCATGGATCCAACAACAGCTAACC
AGCTACCCTCCCTCCCCGGTTGTGTTTTTGACTCGCAGGGGCGGCGGGCG
AGAGGCGCATCCCATGCTCCACTGCCGCTTTCGGAGCCGTTTTGACCTTG
ATCAAGTCCGGCGCGCGCTCGAGAAGAGCGTTATTGCGGCCCCGACCAAC
GTGACCCGGTGGTGCAAGCATCTCGAGTAGTCTAGCTTATTGAAAAGACA
CTTTTCCCGCGGCCGATTGATACCACAGCGTTGCTTGAGAGAGACACCGG
GTTGCAGTGTGGAGCGTTTTTTTTACTCCTGACCTCTGAAAAGGAGAGCG
ACAGCTCGCCGAAAAGGTAGTGATGATTACTGTATTGACACAGCAGTAGA
TGTCCCAACGCGGATATGTGTTCTTCCACGCACGGGTTGTTTTTGGCGTG
ACAAGACGATTAGTCTAACATCCCGTCTGCATGATGCACGCGTGCAACGA
ACAACTATCGTTCGAAGGACTTCTTGGTGTTGTGGCGGGGGAGCCAGGGC
TACATCACGGATCGCACTGAAGCTGGGTCGAAACGAGAAACAAATCTCCG
CGGTCAGGTCGAGAGTTGAGAGCTGTCTTCTTGGTACTGTAGAGTTCGCG
CTCCTTGGAATGGACCCGATGGCGACCTTTGCTCGGAATATCATACATGG
CTGTACATAAGAGTGTGCTTGCTGGCCATTCTTGTTTACTTTCTACAAAC
CTTTGGAACATCGTGCATAGGGGACAGAAGCATTTTGTGGATATTAACGT
GCATGAGCGACGCCGCATGCCACGGGGTACCGGGTTGGATGC

Coding sequence (CDS) from alignment at S-firma_M_contig9482:2219..3760-

>mRNA_S-firma_M_contig9482.20464.1 ID=mRNA_S-firma_M_contig9482.20464.1|Name=mRNA_S-firma_M_contig9482.20464.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=522bp|location=Sequence derived from alignment at S-firma_M_contig9482:2219..3760- (Sphaerotrichia firma Sfir_13m male)
TACGGGTCCTACCTGAGGACGTACAGCACGTGTCACTTGCGCTTCTCCCG
GGCGGTGATCTTCAAAGCCTTCCGCCAGCTGGCCGAACAAGGCCTTTTAC
GATCGGCAGAGTCTGGAACTACGGGTCCTACCTGAGGACGTACAGCACGT
GTCACTTGCGCTTCTCCCGGGCGGTGATCTTCAAAGCCTTCCGCCAGCTG
GCCGAACAAGGCCTTTTACGATCGGCAGAGTCTGGAACGGGCGGCGGGCG
AGAGGCGCATCCCATGCTCCACTGCCGCTTTCGGAGCCGTTTTGACCTTG
ATCAAGTCCGGCGCGCGCTCGAGAAGAGCGTTATTGCGGCCCCGACCAAC
GTGACCCGGTGGTGCAAGCATCTCGAGTAGGGGCGGCGGGCGAGAGGCGC
ATCCCATGCTCCACTGCCGCTTTCGGAGCCGTTTTGACCTTGATCAAGTC
CGGCGCGCGCTCGAGAAGAGCGTTATTGCGGCCCCGACCAACGTGACCCG
GTGGTGCAAGCATCTCGAGTAG