mRNA_S-firma_M_contig9473.20453.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9473.20453.1
Unique NamemRNA_S-firma_M_contig9473.20453.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9473.20453.1 vs. uniprot
Match: D7G6Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.180e-14
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 2 
Query:  188 GGSEARLGGDGSNNPAAGVEDGRKLLEQFRRQRRASSVDRGSQAARGRGGQ----RGPRALSGPSPYSAHLARGAYHPS 412
            GG  +   G  +N  AAGVEDGRKLL+QFRRQRRASSVDRG QA RGRG      R PR LSG SP+S+H A GA+H S
Sbjct:   26 GGDVSTADGSTTNPGAAGVEDGRKLLDQFRRQRRASSVDRGLQATRGRGAHVSRLRRPRELSGASPHSSHHAWGAHHAS 104
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9473.20453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Q4_ECTSI3.180e-1463.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9473contigS-firma_M_contig9473:1578..3676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size421
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9473.20453.1prot_S-firma_M_contig9473.20453.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9473 1711..3676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.761574-UTR-S-firma_M_contig9473:1577..17101622828780.761574-UTR-S-firma_M_contig9473:1577..1710Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9473 1578..1710 +
1697105158.4187405-UTR-S-firma_M_contig9473:1577..17101697105158.4187405-UTR-S-firma_M_contig9473:1577..1710Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9473 1578..1710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.774901-CDS-S-firma_M_contig9473:1710..18391622828780.774901-CDS-S-firma_M_contig9473:1710..1839Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 1711..1839 +
1697105158.4362037-CDS-S-firma_M_contig9473:1710..18391697105158.4362037-CDS-S-firma_M_contig9473:1710..1839Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 1711..1839 +
1622828780.7868001-CDS-S-firma_M_contig9473:2851..29241622828780.7868001-CDS-S-firma_M_contig9473:2851..2924Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 2852..2924 +
1697105158.4465702-CDS-S-firma_M_contig9473:2851..29241697105158.4465702-CDS-S-firma_M_contig9473:2851..2924Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 2852..2924 +
1622828780.8024411-CDS-S-firma_M_contig9473:3590..36761622828780.8024411-CDS-S-firma_M_contig9473:3590..3676Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 3591..3676 +
1697105158.4564364-CDS-S-firma_M_contig9473:3590..36761697105158.4564364-CDS-S-firma_M_contig9473:3590..3676Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9473 3591..3676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9473.20453.1

>prot_S-firma_M_contig9473.20453.1 ID=prot_S-firma_M_contig9473.20453.1|Name=mRNA_S-firma_M_contig9473.20453.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=96bp
MSSSANPAEDGLDSSRTAGGSEARLGGDGSNNPAAGVEDGRKLLEQFRRQ
RRASSVDRGSQAARGRGGQRGPRALSGPSPYSAHLARGAYHPSEAT
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mRNA from alignment at S-firma_M_contig9473:1578..3676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9473.20453.1 ID=mRNA_S-firma_M_contig9473.20453.1|Name=mRNA_S-firma_M_contig9473.20453.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2099bp|location=Sequence derived from alignment at S-firma_M_contig9473:1578..3676+ (Sphaerotrichia firma Sfir_13m male)
GTGAGTTTGGTTTGGTTGCGCGAGCGAGAGAACAGCGACGGGCGACGGGA
GGCGACACACGAAGGCCTAGGAGCAGAGCTACCTGTGACGGTCTGGTCGT
ACGTTATGTTCGTCTGAAGTGGCGTCATCGTTCATGAGCTCTTCCGCCAA
CCCCGCGGAGGACGGGCTCGACAGCAGCAGGACAGCAGGGGGATCTGAAG
CACGGCTTGGCGGAGATGGTTCCAACAACCCTGCTGCGGGCGTGGAGGAT
GGACGGAAGCTGGTGAGGCCATCTTCGTTGACGTGCCACGATGTCTCCCA
GAAAAGAACAATATGAACGACCGGCTGTCGGTCACCCATGGGCCTCGGAA
AACCGCCGATATGTTGTTGATGCAGCCGTTAGCACCATGAGAGCACAGCT
TGCGCTTCCACGGGCGATCCAGAACTCTTGTACGACAGCTCTACTGCTGT
AAGGATCCCTCGCCATACTCCACCTCATTCGGCGCAGTGCCGTCTATCTC
GGATCAACGATTGACTTCTGTGAAGTAGTATGCTCTGCTTCAGCCAGATG
ACTGCCCCTGTCAACACAGCAGCCACTGCTGCTGCTGCTCGGAGAACTTC
TTTGTATGTATGCTCAAAGTTTGAAATTCTGCCGCCGTGTGGGCTCTCTG
GGTGAGCTCAATGCTACAGCCCGACAGAGCGCCGAGCTTGCGGTCTCTAT
AGTGCAACAGCGGCGTGACCCAGCCGCGAGGGTGAACCTGCTGCAGGTGC
TGTAACTCAACATGCTCTTGGCACGGCACGAGAGATACAAATCCGCTGCC
TACCGTGCCCCACAGCAAGTGTTTGTGTGTGTGCGTGTGTTCGCATCTAT
TTTGGTATCAGTCCCTCTGATCAAGGCGAGACGTGTACTTCACTCTGCAG
CTCTGCAGTGTTTTCAGAGGACTACACTTTGCAGCGTATTTTTCTGTCCA
TCTGCACCAACCGGGGTCACACAGGGGGGGCAGTGTTCTACATACAAACG
TCAGCCGATCTACATACGTCCAGCCTCTGTGAAGAAAAAGTCGTTCCAGT
GTGTGGATGTTTTATCACAGACAGGTACTACTGCTTGTAGTCTCACAACG
CCCTCTCGCGTCCGCTGGGTCCGCACGCTTCTTCGCGTCACATCTCCACA
AACAAAACACAACACCCCACGAAGAAAAAAAAGGGGCTGTACCGCCGTGC
ATCCCCCCCCCCGTGCCGACTCCTTGTCCATTGTCCCCCCCTCGCCGTTG
CAATATTTTTTCGCACCAACACAGCTGGAGCAGTTCCGCCGCCAACGGAG
GGCGTCGTCGGTAGACCGAGGTTCGCAGGCCGCTCGCGGACGGGGAGGTG
CGTGCGTGTCAACAATCACTATGGTACAAAACCGCAGTATACTTCCATCT
CGTGAATAAGGGGATATTGAAAAATCACGCGGGAAAGCTGAGAAAGAACT
CCACTGCAGGACCGAGGTCTGGTGCGGTGGTTTTAACGGTTTATATTGTT
GTACTGATAGTTACAGTAGAGCCCGCTGCTGCAGAGCCCAAGAGCAGCAA
ACTGGTAGTCCTTTGTATGCTTTATTTAGTCCTGTCCAGTCGGCAAGAGC
AGCAAACTGGCAGTCCTTTGTATGCCTTATTTAGTTGGTATTTTTTTATC
TTGCCCAGTCAGAGAGCAGCGGGCGCTTGGCCATCCAGGCACAGGCTTGT
CGCACGCCGGCAAAAATGGCGGCGTACGTACAGCACGTGCACTGCTGTTG
GGGAGAACCTGCCCCGCTTCGCCCTACACCGCCGTGGTTGGCTCTCTGTG
AGCGTACATGTCGAACTGAATCGTATATCCGGGTTGGAAGGCGTGCAACA
TCAACTGAGTATCAAATCTCATTGGCGCGTTTGTGCCTCGAAAACGCCGC
TGCGCTGCTGAGCGACTTCCCTCCCCCTCTCGCTCCTTCCCTCTACACCT
ACCTCGGCTTCGCTGTCTCTGCGGGGCATTCATTGATCCCGTGAAACTAC
CGAACGAAAGCAGGGCAAAGGGGGCCGCGGGCTCTGTCCGGACCCTCCCC
CTACAGCGCCCACCTCGCGCGGGGGGCGTACCATCCGAGCGAAGCCACC
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Coding sequence (CDS) from alignment at S-firma_M_contig9473:1578..3676+

>mRNA_S-firma_M_contig9473.20453.1 ID=mRNA_S-firma_M_contig9473.20453.1|Name=mRNA_S-firma_M_contig9473.20453.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=576bp|location=Sequence derived from alignment at S-firma_M_contig9473:1578..3676+ (Sphaerotrichia firma Sfir_13m male)
ATGAGCTCTTCCGCCAACCCCGCGGAGGACGGGCTCGACAGCAGCAGGAC
AGCAGGGGGATCTGAAGCACGGCTTGGCGGAGATGGTTCCAACAACCCTG
CTGCGGGCGTGGAGGATGGACGGAAGCTGATGAGCTCTTCCGCCAACCCC
GCGGAGGACGGGCTCGACAGCAGCAGGACAGCAGGGGGATCTGAAGCACG
GCTTGGCGGAGATGGTTCCAACAACCCTGCTGCGGGCGTGGAGGATGGAC
GGAAGCTGCTGGAGCAGTTCCGCCGCCAACGGAGGGCGTCGTCGGTAGAC
CGAGGTTCGCAGGCCGCTCGCGGACGGGGAGCTGGAGCAGTTCCGCCGCC
AACGGAGGGCGTCGTCGGTAGACCGAGGTTCGCAGGCCGCTCGCGGACGG
GGAGGGCAAAGGGGGCCGCGGGCTCTGTCCGGACCCTCCCCCTACAGCGC
CCACCTCGCGCGGGGGGCGTACCATCCGAGCGAAGCCACCGGCAAAGGGG
GCCGCGGGCTCTGTCCGGACCCTCCCCCTACAGCGCCCACCTCGCGCGGG
GGGCGTACCATCCGAGCGAAGCCACC
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