mRNA_S-firma_M_contig946.20446.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig946.20446.1
Unique NamemRNA_S-firma_M_contig946.20446.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: A0A6H5K163_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K163_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-19
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   10 VQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFA 165
            VQ N G WT EEHQGFL GLEVYG GNW AI VFVPTRS  QI+ YARQ+FA
Sbjct:   16 VQLNGGRWTDEEHQGFLSGLEVYGHGNWNAIAVFVPTRSPPQIEAYARQYFA 67
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: D7G878_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G878_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.690e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 ISRVQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFA 165
            I+ V FN GTWT  EHQGFLRGLEVYG GN +AIG+FVP+RS LQI+ YA+ +FA
Sbjct:   12 IAMVPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWYFA 66
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: A0A6H5JDE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.070e-18
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   10 VQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFA 165
            V FN GTWT  EHQGFLRGLEVYG GN +AIG+FVP+RS LQI+ YA+ H A
Sbjct:   10 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWHLA 61
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: D7FPI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.420e-17
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    4 SRVQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFAGAGSVHQEEV 195
            +R+   +  WT +EH GFL GLEVYG GNW+AI VFVP+RSS QI+ YA+Q+ A   SVH  +V
Sbjct:    4 ARIPLTTEGWTEDEHNGFLHGLEVYGYGNWDAIAVFVPSRSSPQIEAYAQQYVAQGESVHSPQV 67
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: D7G877_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G877_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.810e-17
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 RVQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFAGAGSVH 183
            RV  NSGTWT EEH+GFLRGLEVYG GNW A+ VFV +RS  QI+ YA+ + A   + H
Sbjct:    2 RVPLNSGTWTDEEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKETAH 60
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: D7G876_ECTSI (MYB DNA binding protein/ transcription factor-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G876_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.430e-16
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   19 NSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYARQHFA 165
            + G WT EEHQGFL GLEVYG GNW+AI VFVP+RS  QI+ YA+Q+ A
Sbjct:   22 SGGRWTDEEHQGFLHGLEVYGYGNWDAIAVFVPSRSPPQIEAYAQQYVA 70
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: A0A3L6G600_MAIZE (Transcription factor DIVARICATA n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6G600_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 1.410e-8
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   31 WTVEEHQGFLRGLEVYGSGNWEAIG-VFVPTRSSLQIQDYARQHF 162
            WT +EH+ FLRGLEVYG GNW+ I   FVPTR+ +QI  +A+++F
Sbjct:  158 WTQDEHKNFLRGLEVYGRGNWKNISKYFVPTRTPIQICSHAQKYF 202
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: A0A835ACZ8_9POAL (Uncharacterized protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ACZ8_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 8.030e-8
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 RVQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIG-VFVPTRSSLQIQDYARQHFAGAG 174
            R++  +G WT  EH+ FLRGL VYG GNW+ I   FV TR+ +Q+  +A+++F   G
Sbjct:  120 RMERRTGFWTTAEHRLFLRGLHVYGRGNWKNISKYFVTTRTPVQVSSHAQKYFRRLG 176
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: K3XYL4_SETIT (Uncharacterized protein n=2 Tax=Setaria TaxID=4554 RepID=K3XYL4_SETIT)

HSP 1 Score: 57.0 bits (136), Expect = 1.450e-7
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   13 QFNSGTWTVEEHQGFLRGLEVYGSGNWEAIG-VFVPTRSSLQIQDYARQHFAGAG 174
            +  +G WT+ EH+ FLRGL+VYG GNW+ I   FV TR+ +Q+  +A+++F   G
Sbjct:  122 RLRTGFWTMPEHRLFLRGLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKYFRRIG 176
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BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Match: C5Z8F1_SORBI (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C5Z8F1_SORBI)

HSP 1 Score: 57.0 bits (136), Expect = 1.570e-7
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   31 WTVEEHQGFLRGLEVYGSGNWEAIGV-FVPTRSSLQIQDYARQHF 162
            WT++EH+ FLRGL VYG GNW+ I + FV T++ +Q+  +A+++F
Sbjct:  142 WTIDEHRQFLRGLHVYGRGNWKNISINFVTTKTPVQVSSHAQKYF 186
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig946.20446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K163_9PHAE1.340e-1975.00MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G878_ECTSI2.690e-1869.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE4_9PHAE4.070e-1871.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI5_ECTSI2.420e-1756.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G877_ECTSI3.810e-1761.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G876_ECTSI8.430e-1667.35MYB DNA binding protein/ transcription factor-like... [more]
A0A3L6G600_MAIZE1.410e-857.78Transcription factor DIVARICATA n=3 Tax=Zea mays T... [more]
A0A835ACZ8_9POAL8.030e-845.61Uncharacterized protein n=2 Tax=Digitaria exilis T... [more]
K3XYL4_SETIT1.450e-745.45Uncharacterized protein n=2 Tax=Setaria TaxID=4554... [more]
C5Z8F1_SORBI1.570e-748.89Uncharacterized protein n=1 Tax=Sorghum bicolor Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig946contigS-firma_M_contig946:25049..26184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828780.1576786-CDS-S-firma_M_contig946:25048..251231622828780.1576786-CDS-S-firma_M_contig946:25048..25123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig946 25049..25123 -
1697105158.058577-CDS-S-firma_M_contig946:25048..251231697105158.058577-CDS-S-firma_M_contig946:25048..25123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig946 25049..25123 -
1622828780.1715899-CDS-S-firma_M_contig946:25992..261841622828780.1715899-CDS-S-firma_M_contig946:25992..26184Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig946 25993..26184 -
1697105158.0687478-CDS-S-firma_M_contig946:25992..261841697105158.0687478-CDS-S-firma_M_contig946:25992..26184Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig946 25993..26184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig946.20446.1prot_S-firma_M_contig946.20446.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig946 25049..26184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig946.20446.1

>prot_S-firma_M_contig946.20446.1 ID=prot_S-firma_M_contig946.20446.1|Name=mRNA_S-firma_M_contig946.20446.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=89bp
ISRVQFNSGTWTVEEHQGFLRGLEVYGSGNWEAIGVFVPTRSSLQIQDYA
RQHFAGAGSVHQEEVAQSEGARSVSSAASRGGGGGGGSG
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mRNA from alignment at S-firma_M_contig946:25049..26184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig946.20446.1 ID=mRNA_S-firma_M_contig946.20446.1|Name=mRNA_S-firma_M_contig946.20446.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1136bp|location=Sequence derived from alignment at S-firma_M_contig946:25049..26184- (Sphaerotrichia firma Sfir_13m male)
ATTAGTAGGGTCCAATTCAACTCGGGGACGTGGACGGTCGAGGAACACCA
AGGCTTCCTGCGCGGGCTGGAGGTATACGGGTCCGGCAACTGGGAAGCCA
TCGGGGTCTTCGTACCCACTCGCAGCTCACTCCAGATCCAAGATTACGCC
CGGCAGCACTTCGCGGGGGCTGGATCCGTTCACCAGGAAGAGGTACGCGC
AACCGGAATGTATCGACGGTATGTCCTCACCGACACTTTGATCGCTTGGT
TCGGCTATCTCTATGTAGCTGCTTGGAAGTAGGTATGGGGACTCTTTAGT
ATTGCGCTTCCCGGGGATACATGTAGTCCTTGATACTACCCCTCCTGTGC
AATGGATGGTTGTTGGTGGTGCAACGACCCGCGGAGGACGAGTCGATACC
TTGCAGTGGTCTGTATGCGATCCTGTGTGCCATGGCCGACAACGGCATTT
GCGCTGAGAGCACTGTTCGGCGAGATGGCAGATGCTTGTAGTGACAGCGT
ATGGACATGTATTGGCGGAGGGGCGCGACTTCTTCGTAGTGCCGCCACTA
ATTCTTCTTCAAACGCACGTATTTTTAGTGTGCCTCTCTTTGTTATTATG
TGGTATGCATGTTTTTCATAAAAATGTTTTTTTCACAAAGCCCCCGGCCG
GACAAACCTAGACCCCATCCAGGTGTGCGGCGCGGCCGAGCGAGATGCCT
GATCGTCAAAAATCAAACCGGAATCGCCCGTGTTTGTCGACGGGTGTGGA
AAGCCACCGCTCTAGAGATTTCTTCTTCGTTTTCCTGTGCTGACCTGGCA
TTACCCTCTGGCTTGGCGGGGTATCTGGATCTCATTCGGCATTTTGAGCA
CACAAGGAATAGTGGGAAGAAATGAAACACCACCGTCTTTTCATCGCGTT
CGTGTTTCTCGAAGGTTCACCTTTCGCACAGCACAACACACATCACAACA
TGATCAGCATTCGTCTACTTCTCTGCCGTCCCTCGCCCCCCTCACACAAA
CGAACGTTTGCCGGCCTCAAATCCGTGCGCCGCTTCGTCGCGCCCGAACA
TGATGATACAGGTTGCGCAAAGCGAGGGGGCTCGCTCGGTTTCCTCGGCC
GCCTCGCGCGGCGGCGGCGGCGGCGGTGGCAGTGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig946:25049..26184-

>mRNA_S-firma_M_contig946.20446.1 ID=mRNA_S-firma_M_contig946.20446.1|Name=mRNA_S-firma_M_contig946.20446.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_M_contig946:25049..26184- (Sphaerotrichia firma Sfir_13m male)
ATTAGTAGGGTCCAATTCAACTCGGGGACGTGGACGGTCGAGGAACACCA
AGGCTTCCTGCGCGGGCTGGAGGTATACGGGTCCGGCAACTGGGAAGCCA
TCGGGGTCTTCGTACCCACTCGCAGCTCACTCCAGATCCAAGATTACGCC
CGGCAGCACTTCGCGGGGGCTGGATCCGTTCACCAGGAAGAGATTAGTAG
GGTCCAATTCAACTCGGGGACGTGGACGGTCGAGGAACACCAAGGCTTCC
TGCGCGGGCTGGAGGTATACGGGTCCGGCAACTGGGAAGCCATCGGGGTC
TTCGTACCCACTCGCAGCTCACTCCAGATCCAAGATTACGCCCGGCAGCA
CTTCGCGGGGGCTGGATCCGTTCACCAGGAAGAGGTTGCGCAAAGCGAGG
GGGCTCGCTCGGTTTCCTCGGCCGCCTCGCGCGGCGGCGGCGGCGGCGGT
GGCAGTGGCGTTGCGCAAAGCGAGGGGGCTCGCTCGGTTTCCTCGGCCGC
CTCGCGCGGCGGCGGCGGCGGCGGTGGCAGTGGC
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