mRNA_S-firma_M_contig9443.20428.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9443.20428.1
Unique NamemRNA_S-firma_M_contig9443.20428.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9443.20428.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 9.430e-54
Identity = 185/270 (68.52%), Postives = 205/270 (75.93%), Query Frame = 1 
Query:    1 KLAERIPLKRHRPAGLRGKVAGSDDMFLDFDIDERDVPAHPPPGGNEVHLYQYYVQRLLCTVPRADRLRARTMEGRVPLRASRVKAHLDMFHNRKPYGDRCLLKETNYAYKVGHRNILESDVAVEEAIPGP----------VASGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RTFQSFSGPCRAVVTFALFRSAAKGKGLKLQGHLPEKRLFEVEALEHNTLQQVM 759
            KLA+ IPLKR RP GL G++AGSDDM+LDFDIDE  VP  PP G ++V LYQYYVQR++  VPRA+ L+ RT EG VPLR  RVK  LD+  + KPYGD  LLKETN+  +     + E   +   A   P          VA+G A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       R FQSFSGP RAVVTFAL+RSAAKGKGL+L GHLPEKRLFEVEALEHNTLQQ+M
Sbjct:   90 KLAQCIPLKRQRPEGLVGRMAGSDDMYLDFDIDETTVPLEPPQGVSDVQLYQYYVQRIMSAVPRANSLKGRTTEGPVPLRICRVKNQLDIALS-KPYGDIHLLKETNHISEEKRHRVAEEAFSRSAAGEAPNSRDGVAAEAVANGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGALSGQRIFQSFSGPSRAVVTFALYRSAAKGKGLRLPGHLPEKRLFEVEALEHNTLQQIM 358
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BLAST of mRNA_S-firma_M_contig9443.20428.1 vs. uniprot
Match: A0A6H5KW97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW97_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.680e-22
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:  604 FQSFSGPCRAVVTFALFRSAAKGKGLKLQGHLPEKRLFEVEALEHNTLQQVM 759
            FQSFSGP RAVVTFAL+RSAAKGKGL+L GHLPEKRLFEVEALEHNTLQQVM
Sbjct:    2 FQSFSGPSRAVVTFALYRSAAKGKGLRLPGHLPEKRLFEVEALEHNTLQQVM 53
[Close]
BLAST of mRNA_S-firma_M_contig9443.20428.1 vs. uniprot
Match: A0A6H5KJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.380e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   49 RGKVAGSDDMFLDFDIDERDVPAHPPPGGNEVHLYQYYVQRLLCTVPRADRLRARTMEGRVPLRASR 249
            R  +AGSDDM+LD+DIDE  VP  PP G ++V LYQYYVQR++  VPRA  L+ RT EG +PLR  R
Sbjct:   95 RTMMAGSDDMYLDYDIDETTVPPEPPQGVSDVQLYQYYVQRIMSAVPRAHSLKGRTTEGPIPLRICR 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9443.20428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU78_ECTSI9.430e-5468.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW97_9PHAE2.680e-2292.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJY6_9PHAE2.380e-1759.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9443contigS-firma_M_contig9443:738..3897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9443.20428.1prot_S-firma_M_contig9443.20428.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9443 738..3897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828777.8498344-CDS-S-firma_M_contig9443:737..9981622828777.8498344-CDS-S-firma_M_contig9443:737..998Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 738..998 -
1697105156.5081625-CDS-S-firma_M_contig9443:737..9981697105156.5081625-CDS-S-firma_M_contig9443:737..998Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 738..998 -
1622828777.8620358-CDS-S-firma_M_contig9443:1717..18821622828777.8620358-CDS-S-firma_M_contig9443:1717..1882Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 1718..1882 -
1697105156.5189013-CDS-S-firma_M_contig9443:1717..18821697105156.5189013-CDS-S-firma_M_contig9443:1717..1882Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 1718..1882 -
1622828777.874202-CDS-S-firma_M_contig9443:2630..27151622828777.874202-CDS-S-firma_M_contig9443:2630..2715Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 2631..2715 -
1697105156.52992-CDS-S-firma_M_contig9443:2630..27151697105156.52992-CDS-S-firma_M_contig9443:2630..2715Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 2631..2715 -
1622828777.8863173-CDS-S-firma_M_contig9443:3649..38971622828777.8863173-CDS-S-firma_M_contig9443:3649..3897Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 3650..3897 -
1697105156.540361-CDS-S-firma_M_contig9443:3649..38971697105156.540361-CDS-S-firma_M_contig9443:3649..3897Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9443 3650..3897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9443.20428.1

>prot_S-firma_M_contig9443.20428.1 ID=prot_S-firma_M_contig9443.20428.1|Name=mRNA_S-firma_M_contig9443.20428.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=253bp
KLAERIPLKRHRPAGLRGKVAGSDDMFLDFDIDERDVPAHPPPGGNEVHL
YQYYVQRLLCTVPRADRLRARTMEGRVPLRASRVKAHLDMFHNRKPYGDR
CLLKETNYAYKVGHRNILESDVAVEEAIPGPVASGVAAAGGSVAAERGSA
ARGGGAATATRAAVGEAGGSSSISSSSGGGGGARSATAAAPSATAGGGGR
TFQSFSGPCRAVVTFALFRSAAKGKGLKLQGHLPEKRLFEVEALEHNTLQ
QVM
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mRNA from alignment at S-firma_M_contig9443:738..3897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9443.20428.1 ID=mRNA_S-firma_M_contig9443.20428.1|Name=mRNA_S-firma_M_contig9443.20428.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3160bp|location=Sequence derived from alignment at S-firma_M_contig9443:738..3897- (Sphaerotrichia firma Sfir_13m male)
AAGCTTGCCGAACGCATCCCTCTCAAGAGACACCGGCCCGCCGGCCTGAG
GGGGAAGGTGGCCGGCTCCGACGACATGTTCCTGGACTTCGACATCGACG
AGAGAGACGTGCCTGCCCACCCGCCGCCGGGGGGCAACGAGGTCCACCTC
TACCAGTACTACGTGCAGCGGCTGCTGTGCACGGTGCCCCGCGCGGACAG
GCTCCGGGCCCGCACGATGGAGGGCCGGGTTCCTCTCCGAGCAAGCCGGT
GGGTGCTTTTTTATTAAATTTTCTACATACATTCGTCAGCCGTATAATTC
ACGTCCGTCCTGTGAATAAGTCGTTCCGCAGGGGGACTCTTTGGTGTGTT
TTGTACCAAACGACGTCAGCCGTATACGCCCGTTCTGGGAATAGATCGTT
CGTTCCTTTTTTGTTTTGTTTTTTTGTCCCACGGACTAATTTTACCCCCG
AGTTTTGCAATACTGGACAACGAGGGTCCGGTAAATTTGGGTGTTTCGTG
AATGCGGAGGTATGCTGCTGTGTCAGCCTACGTGTCGTGTTTCTATCCTG
TTGTAGGCGCAGGAGCAGTAGTAGCTCTCCCGTTGATCTCTACGGCGGCC
TCATTAAGACAACGATGTTTGTGTGGGTTTTTTACCTGTGTGTAAGCTGC
GTGCACAGCAGTGGAGTATGGGTGGGTGGGCGGCGTGATCGTACGGGGAG
GGCAGACGGTGGTGGTGTCTTGTTTTCCGGGAGATGCGTAGATGCCTGAC
TCCCCGAGGATATATGACAGGTTCGGTCGGGTTTTTTGTTGTCGGGATTT
TGGGATTTGTATCCACGGGGACCCTGTGTTGGAGAGCAGTCAGTCGACCA
ATCCTTTGAAAGCCACCACAGCAGCATCGTGTGCATGCACTTGGCATGAA
TTTTTTCGTTCGCAGCCTCGAACTTAACGCAACGTTTACAAGACTTGTCA
AGAATCTCGCAACGTTCTACTCTCTCGTTCGCGGAAAGATGTCTTCCGTG
ACCTGCGGGTGGTAAGTCCATCGTCACCCTTTGGCGCCAACGGACGATTA
TAGTCTTACCTCAGCCTTGCCGACAGAACTGTCCACGCACCACACCAGAA
ACCAGAGACAGGAGTCGTGTCACCTACCGTACCCCTGGCTTGCCCATGGT
CAAACGCGTTTTTTCCCCTCGTCGTCCCGCAGGGTGAAGGCCCACCTCGA
CATGTTCCACAACAGGAAGCCCTACGGAGACCGTTGCCTCCTCAAGGAGA
CCAACTACGCCTACAAGGTAGATGGATCTTGCCTGCTTTGCATCGGCGTG
CTGGCTGTTAACGATTATCCTATCCTACGATTCGCACAGAAACAAAATGA
GGGCGGGCAAGCGCGGGTGAGTTTCCCCGCAACCGGGAAATTTCTTCCCC
CAAGGAAATTTCTCCCCAAAGGAAAAGGCCAGGACACCGCAGAACTACGA
ACAGGCACGAGAAATGTGGTAGGCAGAGGGGGTAGCTCTTCTCATCACGC
GGACCTCTGTCGACGCACACGCGCCACTGCTAAGGTACCCTTGCTTGCCG
CCAACAACAGTGGACAGCCACCGTTGGGTGATAAGCCGACCAACGTTGAT
GCGCACCCCTGCTATTTTTACCCTTGCCGGCCACCACCGGCTGCGGACAC
CGTGGAGTGATGGCCGACCAGCGAGCAAGACACGGCAGTAGCATCGGGAG
TGGGGGGGGGGGGGACCAACGCCGTATCTTGTGTTGATGTTGATGGCAGC
CCTCGAAGCTGCAGGGACCCCTCACGCCTCCTACCCACTGCTCCCTCACC
CCGGGGGGGGGCTAGACCGGCCGCCCACTATACAGCTGTCAATTCCTGAT
CACGCGGTTGGGCACCGTATGTCCCTGGCCTCTCCCATTTTCTGCTGTGC
CGTAGCTCGCGTTGTCATGCGTCGCTGGTTCTCTCGTTGCTTGGTTTTTC
TGGTCTCCCCGCCCTCAAACCGTTCGGAAACCTCTTCCCCTGAAACCGGC
TCACCGCTTCCTTAGGTAGGGCACCGAAATATCCTTGAGAGCGACGTCGC
TGTCGAAGAGGCCATTCCGGGTCCCGTCGCCTCTGGCGTGGCCGCTGCAG
GGGGGTCCGTGGCTGCAGAGAGGGGCTCGGCGGCAAGAGGGGGGGGGGCG
GCGACGGCGACACGGGCCGCTGTGGGGGAGGTGGGTGGGTAAATTAGGTT
CGGTTGTTGTTTTGGTCGCAGAGGGAGCGAGCCCTGAGATGGTGCTTTTT
TTGTCTGGTCACCCGCGACGATGTGCTTGTGCGGAGCCTTGCTTGCGGGT
TGGCTGTGTTCGATGACTCGACGTTTTGGGTGCGTTGACAGGGCTCGATC
GTGAGGCATGAGTTTTGCTTCTGGTGTAATGGCGCCTCGTTCCAATAGGA
AGAGAAAGCGCGCGCGAGAGAGAGCGAGAGAGAGAGAGATGGCACGAGTT
CGAATATGATCGTGATGGACCTTGTCTACAGAACACCTACCTATTTAGGC
GTGCGATTGTCTCATCAAAACACCTTCGGTGTTTGTTCGCCGCCTTCGCC
CTCTTCGCGCAGCAGTAGCACGCCACCAACCTCTCTTACCCTGCGTGATC
GTTTCTCCTCTACCACGGTTGTTTCTGGCGTCTCCGGGTGTCTGGCCTTT
CCCTGCCCGAGGTGGCCATCAGCATTGCAAGCGGCCCCAAAATAGTCGCT
TTCCTGCAGAACACTTCCGGCGCTGATGAACACGGGCTAGCTCAGCACTC
CCCAAACCCTCGAGCGTACAAACCAACCCATACCTTCCCCTTTTTCTGGA
GGCGGGGAAAGGGAATAGCTCTGGCGCTCAGAAATCCTGCACCAATCGGT
TCGTCTGTCGTTGTGCCCTTGTCTTCTCGCCATTCCGCTGTGCCCCCAGG
CCGGCGGAAGCAGCAGCATCAGCAGCAGCAGCGGCGGCGGCGGAGGGGCA
AGGTCTGCCACGGCAGCGGCACCGTCGGCCACCGCCGGGGGGGGGGGCAG
GACCTTCCAGTCCTTCTCCGGCCCCTGCCGCGCGGTGGTGACGTTCGCGC
TGTTCCGGTCTGCGGCGAAGGGGAAAGGGCTCAAGCTCCAGGGTCACCTC
CCCGAGAAGCGGCTGTTCGAGGTGGAGGCCCTCGAGCACAACACGCTGCA
GCAGGTCATG
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Coding sequence (CDS) from alignment at S-firma_M_contig9443:738..3897-

>mRNA_S-firma_M_contig9443.20428.1 ID=mRNA_S-firma_M_contig9443.20428.1|Name=mRNA_S-firma_M_contig9443.20428.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1518bp|location=Sequence derived from alignment at S-firma_M_contig9443:738..3897- (Sphaerotrichia firma Sfir_13m male)
AAGCTTGCCGAACGCATCCCTCTCAAGAGACACCGGCCCGCCGGCCTGAG
GGGGAAGGTGGCCGGCTCCGACGACATGTTCCTGGACTTCGACATCGACG
AGAGAGACGTGCCTGCCCACCCGCCGCCGGGGGGCAACGAGGTCCACCTC
TACCAGTACTACGTGCAGCGGCTGCTGTGCACGGTGCCCCGCGCGGACAG
GCTCCGGGCCCGCACGATGGAGGGCCGGGTTCCTCTCCGAGCAAGCCGAA
GCTTGCCGAACGCATCCCTCTCAAGAGACACCGGCCCGCCGGCCTGAGGG
GGAAGGTGGCCGGCTCCGACGACATGTTCCTGGACTTCGACATCGACGAG
AGAGACGTGCCTGCCCACCCGCCGCCGGGGGGCAACGAGGTCCACCTCTA
CCAGTACTACGTGCAGCGGCTGCTGTGCACGGTGCCCCGCGCGGACAGGC
TCCGGGCCCGCACGATGGAGGGCCGGGTTCCTCTCCGAGCAAGCCGGGTG
AAGGCCCACCTCGACATGTTCCACAACAGGAAGCCCTACGGAGACCGTTG
CCTCCTCAAGGAGACCAACTACGCCTACAAGGGTGAAGGCCCACCTCGAC
ATGTTCCACAACAGGAAGCCCTACGGAGACCGTTGCCTCCTCAAGGAGAC
CAACTACGCCTACAAGGTAGGGCACCGAAATATCCTTGAGAGCGACGTCG
CTGTCGAAGAGGCCATTCCGGGTCCCGTCGCCTCTGGCGTGGCCGCTGCA
GGGGGGTCCGTGGCTGCAGAGAGGGGCTCGGCGGCAAGAGGGGGGGGGGC
GGCGACGGCGACACGGGCCGCTGTGGGGGAGGTAGGGCACCGAAATATCC
TTGAGAGCGACGTCGCTGTCGAAGAGGCCATTCCGGGTCCCGTCGCCTCT
GGCGTGGCCGCTGCAGGGGGGTCCGTGGCTGCAGAGAGGGGCTCGGCGGC
AAGAGGGGGGGGGGCGGCGACGGCGACACGGGCCGCTGTGGGGGAGGCCG
GCGGAAGCAGCAGCATCAGCAGCAGCAGCGGCGGCGGCGGAGGGGCAAGG
TCTGCCACGGCAGCGGCACCGTCGGCCACCGCCGGGGGGGGGGGCAGGAC
CTTCCAGTCCTTCTCCGGCCCCTGCCGCGCGGTGGTGACGTTCGCGCTGT
TCCGGTCTGCGGCGAAGGGGAAAGGGCTCAAGCTCCAGGGTCACCTCCCC
GAGAAGCGGCTGTTCGAGGTGGAGGCCCTCGAGCACAACACGCTGCAGCA
GGTCATGGCCGGCGGAAGCAGCAGCATCAGCAGCAGCAGCGGCGGCGGCG
GAGGGGCAAGGTCTGCCACGGCAGCGGCACCGTCGGCCACCGCCGGGGGG
GGGGGCAGGACCTTCCAGTCCTTCTCCGGCCCCTGCCGCGCGGTGGTGAC
GTTCGCGCTGTTCCGGTCTGCGGCGAAGGGGAAAGGGCTCAAGCTCCAGG
GTCACCTCCCCGAGAAGCGGCTGTTCGAGGTGGAGGCCCTCGAGCACAAC
ACGCTGCAGCAGGTCATG
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