mRNA_S-firma_M_contig9431.20418.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9431.20418.1
Unique NamemRNA_S-firma_M_contig9431.20418.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9431.20418.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.180e-21
Identity = 58/91 (63.74%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:  163 SHAAYEIHRAQQAIVDFLLSDPDDEGLWEGILLPPSAPSSRP-AAPGSGLGQGSPLLYLKALLVDGALGACTPAIGERCLRLALRAVGGGE 432
            SHAAY  HRAQQAIVDFLLSDPDDE L EGILLP   PSS   AAPG G  + +   Y   LL+D A+G CTPA  ERCL LALR+ G  E
Sbjct: 1103 SHAAYTPHRAQQAIVDFLLSDPDDEALLEGILLPVLFPSSSSSAAPGEGY-RDACSSYWHTLLLDAAIGTCTPATAERCLHLALRSAGNDE 1192
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BLAST of mRNA_S-firma_M_contig9431.20418.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.330e-18
Identity = 79/167 (47.31%), Postives = 90/167 (53.89%), Query Frame = 1 
Query:    1 KAAALQALLYSRRADRFTAPPSRLGGGRTS-----------EDGSKASGKTKAIHSGSTAVEGA---ASHAAYEIHRAQQAIVDFLLSDPDDEGLWEGILLPPSAPSSRP-----AAPGSGLGQGSPLLYLKALLVDGALGACTPAIGERCLRLALRAVGGGEGGGD 444
            KAAAL+ALL+S      + PP  L    TS           E   K S + KA  S + + E A    S AA+  HRAQQAIVDFLLSDPDDE L EGILLP   PSS       AAP  G  + +   Y   LL+D A+  CTPA  ERCL LALRA G  E  GD
Sbjct:  362 KAAALEALLHS------SCPPG-LSAATTSTTTVVSHATARESEPKPSAEAKASGSTTGSKESAKSTVSQAAHTSHRAQQAIVDFLLSDPDDEALLEGILLPVLFPSSSSLSSSSAAPREGH-RDACSSYWHTLLLDAAIRKCTPATAERCLHLALRAAGNDEPAGD 520
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9431.20418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ23_ECTSI9.180e-2163.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4X7_9PHAE4.330e-1847.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9431contigS-firma_M_contig9431:3025..3921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828776.7910237-CDS-S-firma_M_contig9431:3024..33091622828776.7910237-CDS-S-firma_M_contig9431:3024..3309Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9431 3025..3309 -
1697105155.7810981-CDS-S-firma_M_contig9431:3024..33091697105155.7810981-CDS-S-firma_M_contig9431:3024..3309Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9431 3025..3309 -
1622828776.80786-CDS-S-firma_M_contig9431:3723..39211622828776.80786-CDS-S-firma_M_contig9431:3723..3921Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9431 3724..3921 -
1697105155.796844-CDS-S-firma_M_contig9431:3723..39211697105155.796844-CDS-S-firma_M_contig9431:3723..3921Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9431 3724..3921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9431.20418.1prot_S-firma_M_contig9431.20418.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9431 3025..3921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9431.20418.1

>prot_S-firma_M_contig9431.20418.1 ID=prot_S-firma_M_contig9431.20418.1|Name=mRNA_S-firma_M_contig9431.20418.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=161bp
KAAALQALLYSRRADRFTAPPSRLGGGRTSEDGSKASGKTKAIHSGSTAV
EGAASHAAYEIHRAQQAIVDFLLSDPDDEGLWEGILLPPSAPSSRPAAPG
SGLGQGSPLLYLKALLVDGALGACTPAIGERCLRLALRAVGGGEGGGDGL
GLAPRGRRSSG
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mRNA from alignment at S-firma_M_contig9431:3025..3921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9431.20418.1 ID=mRNA_S-firma_M_contig9431.20418.1|Name=mRNA_S-firma_M_contig9431.20418.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=897bp|location=Sequence derived from alignment at S-firma_M_contig9431:3025..3921- (Sphaerotrichia firma Sfir_13m male)
AAGGCGGCGGCGTTGCAGGCGCTCCTGTACAGCCGTCGCGCCGATCGATT
CACGGCGCCGCCGTCGAGACTCGGTGGCGGCAGAACAAGCGAGGATGGAA
GCAAAGCTTCGGGGAAGACGAAAGCTATTCATAGCGGCAGCACTGCTGTG
GAGGGTGCTGCATCGCACGCCGCGTACGAGATACACCGTGCGCAGCAGGT
AGGTCGAGGGTTTGAGAGAAAATACCAGTGATGGGAGGGGGTGAACCAGC
AGCAGACGCTGAGCGCACACGTCTTGCTCCTTGCTCTTGATGGTGCCGAA
CCCACCACTGATTCGAGCTGGGATTCCTCTCCATCGTTCAGGGGAACCCC
TGAGATGGAAGATGAATGACCTTTGGGGCTCAAGTTCATTTCGGATTCCG
AGCGCCAACACAGGCACCGGCGCCGTATTATTTCTCTCCCGCACTGCTGT
TCCACGCGTGCATGCCGCCGTACCTATCATACGTATTTCAACGTCATGCT
CTCTCAAGTCTCATCAGCTGACCTCGACTCTCTCTCTCTCTCTCTCTCTC
TCTCTTTCGTTCTCGAAATGGATCTTGATCCCGACGAACCGCTGTTCCTC
CCGTTGGTCCAGGCGATCGTCGACTTCCTGCTGTCCGACCCGGACGACGA
GGGGCTGTGGGAGGGGATACTGCTGCCGCCCTCGGCCCCCTCCTCTCGCC
CGGCGGCTCCAGGGTCAGGGCTGGGGCAAGGTTCCCCGCTGTTGTACTTG
AAAGCCCTCCTCGTTGACGGGGCTCTCGGCGCCTGCACCCCGGCGATCGG
AGAACGGTGTTTGCGCTTGGCCCTCAGAGCCGTGGGCGGCGGCGAGGGCG
GCGGCGACGGTCTTGGTCTCGCGCCGCGGGGGCGACGCAGCAGTGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9431:3025..3921-

>mRNA_S-firma_M_contig9431.20418.1 ID=mRNA_S-firma_M_contig9431.20418.1|Name=mRNA_S-firma_M_contig9431.20418.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=966bp|location=Sequence derived from alignment at S-firma_M_contig9431:3025..3921- (Sphaerotrichia firma Sfir_13m male)
AAGGCGGCGGCGTTGCAGGCGCTCCTGTACAGCCGTCGCGCCGATCGATT
CACGGCGCCGCCGTCGAGACTCGGTGGCGGCAGAACAAGCGAGGATGGAA
GCAAAGCTTCGGGGAAGACGAAAGCTATTCATAGCGGCAGCACTGCTGTG
GAGGGTGCTGCATCGCACGCCGCGTACGAGATACACCGTGCGCAGCAGAA
GGCGGCGGCGTTGCAGGCGCTCCTGTACAGCCGTCGCGCCGATCGATTCA
CGGCGCCGCCGTCGAGACTCGGTGGCGGCAGAACAAGCGAGGATGGAAGC
AAAGCTTCGGGGAAGACGAAAGCTATTCATAGCGGCAGCACTGCTGTGGA
GGGTGCTGCATCGCACGCCGCGTACGAGATACACCGTGCGCAGCAGGCGA
TCGTCGACTTCCTGCTGTCCGACCCGGACGACGAGGGGCTGTGGGAGGGG
ATACTGCTGCCGCCCTCGGCCCCCTCCTCTCGCCCGGCGGCTCCAGGGTC
AGGGCTGGGGCAAGGTTCCCCGCTGTTGTACTTGAAAGCCCTCCTCGTTG
ACGGGGCTCTCGGCGCCTGCACCCCGGCGATCGGAGAACGGTGTTTGCGC
TTGGCCCTCAGAGCCGTGGGCGGCGGCGAGGGCGGCGGCGACGGTCTTGG
TCTCGCGCCGCGGGGGCGACGCAGCAGTGGCGCGATCGTCGACTTCCTGC
TGTCCGACCCGGACGACGAGGGGCTGTGGGAGGGGATACTGCTGCCGCCC
TCGGCCCCCTCCTCTCGCCCGGCGGCTCCAGGGTCAGGGCTGGGGCAAGG
TTCCCCGCTGTTGTACTTGAAAGCCCTCCTCGTTGACGGGGCTCTCGGCG
CCTGCACCCCGGCGATCGGAGAACGGTGTTTGCGCTTGGCCCTCAGAGCC
GTGGGCGGCGGCGAGGGCGGCGGCGACGGTCTTGGTCTCGCGCCGCGGGG
GCGACGCAGCAGTGGC
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