mRNA_S-firma_M_contig9398.20377.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9398.20377.1
Unique NamemRNA_S-firma_M_contig9398.20377.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 5.510e-98
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSFQMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIVVSV 588
            RQ +LVCITG+AGVVAY GAL AYGV+ER EGD LANC VEGLFDY GWGVWTSVALVRVYRSWKIL RH+VDMWPAW QVAL+SIPWL+P VAYSI+P L+EFNE GNWCDIN+ IDTALYVYG VPIIGA  LSFQMRRVRKQMNF+RMQ   LL FL   GT+IFP++E  L S   IRRTWIMYDNIV S+
Sbjct:   24 RQTSLVCITGVAGVVAYIGALFAYGVIERHEGDFLANCAVEGLFDYTGWGVWTSVALVRVYRSWKILCRHSVDMWPAWAQVALLSIPWLVPVVAYSIKPSLSEFNELGNWCDINVAIDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFYRMQVLQLL-FLFVTGTIIFPLLEESLHSN--IRRTWIMYDNIVSSI 215
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 1.250e-66
Identity = 100/187 (53.48%), Postives = 135/187 (72.19%), Query Frame = 1 
Query:   28 TGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSFQMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIVVSV 588
            TG+AG+VAY GA++A G ++R  GDL A+CG++ +F Y  WGVW SVALVRVYRSWKIL++H+V+MWP W QV L+++PW IP VAY+I+  L+ FNE  NWC+I  PIDT  Y+ G   I  A  L +QMR+VRKQMN +R+Q   L  FLL  G+V+FP+    LD++  IRR W++Y N + S+
Sbjct:    2 TGLAGIVAYLGAMVAAGAIKRHSGDLFAHCGLDAVFHYTTWGVWISVALVRVYRSWKILIKHSVEMWPPWAQVLLLTVPWCIPAVAYTIDDHLSRFNEVRNWCEIYRPIDTFTYILGSSLIASAFVLVYQMRKVRKQMNEYRLQVFQLA-FLLLTGSVVFPLQHLLLDNKHGIRRIWVLYHNFLDSL 187
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.050e-50
Identity = 86/160 (53.75%), Postives = 110/160 (68.75%), Query Frame = 1 
Query:  109 ANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSFQMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIVVSV 588
            A+CG + LF YA WGVW SVALVRVYRSWKILV+H+VDMW  W QVAL+++PW  P V Y+ + DLA FNE  NWC+   P+ +  YV   + I GA  L +QMR+VRKQMN + +Q   L  FLL  GTV+FP+    LD R +IRR W++Y N+  S+
Sbjct:  392 AHCGFDALFQYATWGVWISVALVRVYRSWKILVKHSVDMWRPWAQVALLTLPWCFPAVVYTTDEDLAPFNETRNWCESYRPVQSFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLT-FLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNLFDSL 550
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: A0A6H5L5B5_9PHAE (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.960e-32
Identity = 71/195 (36.41%), Postives = 105/195 (53.85%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVY--GCVPIIGALCLSFQMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIVV 582
            + +TLV  TG+   +   GAL+AYG ++R  GDLLA CGVE L    G  +    A VRVYR+  +LVRH+  MW    Q+ L+S+P+L+P + Y+++P LAEF +  N C  N  I+ A++ +    V +   L    + +RVRKQ+N   +    +  FLL     + P    + D      R   M D+IVV
Sbjct:   38 KNVTLVAATGLGSSLHALGALVAYGALDRDSGDLLARCGVEALLTLLGMALLFFPAFVRVYRNHMVLVRHSASMWAPMAQLQLVSLPFLVPAITYTLDPSLAEFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVARIKAKRVRKQLNDDTVMMTSVA-FLLVWVLYLIPTGHWFWDDNPSATRRLAMVDSIVV 231
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: D7G9A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A7_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.660e-29
Identity = 71/194 (36.60%), Postives = 108/194 (55.67%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPI-IGALCLS-FQMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIV 579
            + +TLV  TG+ G +   GAL+AYG ++R  GD LA CGVE L    G  +    A VRVYR+ K+LVRH+  MW    Q+ L+S+P+L+P + Y+++P LA+F +  N C  N  I+ A++ +    + +G + +S  + +RVRKQ+N   +    L  FLL     + P    + D      R   M D+IV
Sbjct:   38 KNVTLVAATGLGGSLHALGALVAYGALDRDSGDFLARCGVEALLTSLGMALLFFPACVRVYRNHKVLVRHSASMWTPMAQLQLVSLPFLVPAITYTLDPPLADFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVSRIKAKRVRKQLNDDTVMMTSLA-FLLVWVLYLIPTGHWFWDDSPSAARRLAMVDSIV 230
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.980e-19
Identity = 59/196 (30.10%), Postives = 105/196 (53.57%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMP-IDTALYVYGCVPIIGALCLSFQMRRVRKQMNFFR---MQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIV 579
            + + LVC+TG+AG +   G +I++G  E     L +NC  +G+    G G++ + A+VRVYR++K+L+ HTVDM P   Q+ ++  P  +  + + + P +A F+   N C  N   +    + Y  + +IG++ L ++MR  R+QM  +R   +    LL+ L AV      + E+     D + R   + +N+V
Sbjct:   44 KNVPLVCVTGVAGFIHLSGVVISFGFWEYSSPSLWSNCFFQGVLVSTGAGLYFAGAVVRVYRNYKVLMLHTVDMLPPTVQILIVQAPMWVAAM-FLLIPSVASFDFEANRCKGNARHVLLGAFNYAGLLVIGSVYLLWKMRDARRQMTEYRAMMVSLVSLLVMLAAVNLTAGKIAED-----DTLTRRIALLNNMV 233
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: D7FIR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.550e-14
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSF-------QMRRVRKQMNFFRMQARPLLLFLLAVGT 498
            + + +V I+  +GV+     +I+ G + R+ GD+LA C  E    ++   V T    +RVYR+W+IL++H   MW    Q+  +S   LIP VA    P    F+E  N C       +A+ V G +  +G L + +       Q++ VRKQ N +    R LL   + + +
Sbjct:   48 KNVDVVIISTFSGVLWNVSMIISSGYIRREAGDILAACDFERFLSWSTLCVHTVSFFIRVYRTWRILIKHDDKMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEAANTCSTTT--FSAIVVLG-MDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTVTLAS 216
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.030e-12
Identity = 57/195 (29.23%), Postives = 89/195 (45.64%), Query Frame = 1 
Query:    4 RQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSF----QMRRVRKQMNFF---RMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMY 567
            + + +V I  +AG      + +  G++ R EGD LA C ++    ++   V      VRVYR W+IL++H   MWPA  QV ++S   L P +A  + PDL  F+E  N C+        +     +       L F    Q+R VRKQ N +   +     L L L +   V+  ++ N       +RR  I+Y
Sbjct:   31 KNVDIVIIMTLAGFAWTFASALQSGLIPRNEGDFLAICYIDTTLSWSTLAVHIMSFAVRVYRMWRILIKHDDSMWPAKYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLWFVCTRQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNN---QHVLVRRVAIVY 222
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-9
Identity = 49/166 (29.52%), Postives = 74/166 (44.58%), Query Frame = 1 
Query:   91 KEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSF-------QMRRVRKQMNFFRMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMY 567
            + GD+LA C  E    ++   V T    +RVYR W+IL++H   MW    Q+  +S   LIP VA    P    F+E  N C       + + V G +  +G L + +       Q++ VRKQ N +    R LL   + + +    VV    D+    RR  + Y
Sbjct:   66 RPGDILAACDFERFLSWSTLCVHTVAFFIRVYRMWRILIKHDDQMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTT--FSTIVVLG-MDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTITLASYGVIVVYLLADNLVLGRRVSVFY 228
[Close]
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.450e-9
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   76 GVVERKEGDLLANCGVEGLFDYAGWGVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEPDLAEFNERGNWC 336
            G+  R EGD+LA C +E L  +           +RVYR W+ILV+H  +MWPA  Q+ L+S   L P +   + P    F+E  N C
Sbjct:   71 GLFRRSEGDILAKCYLERLLAWPALCTHMFAFFIRVYRMWRILVKHDENMWPAKYQIMLLSSISLTPALVALLVPGAYVFDETVNLC 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9398.20377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G7J3_ECTSI5.510e-9877.44RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0B4_ECTSI1.250e-6653.48RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5K1F7_9PHAE1.050e-5053.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5B5_9PHAE8.960e-3236.41G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
D7G9A7_ECTSI1.660e-2936.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMI3_9PHAE8.980e-1930.10RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIR8_ECTSI9.550e-1429.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ6_ECTSI1.030e-1229.23Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5KAT5_9PHAE2.180e-929.52RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJQ0_9PHAE2.450e-937.93RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9398contigS-firma_M_contig9398:388..3822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score314.3
Seed ortholog evalue4e-83
Seed eggNOG ortholog2880.D7G7J3
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons4
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9398.20377.1prot_S-firma_M_contig9398.20377.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9398 388..3822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828771.7865674-CDS-S-firma_M_contig9398:387..5041622828771.7865674-CDS-S-firma_M_contig9398:387..504Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 388..504 -
1697105152.823859-CDS-S-firma_M_contig9398:387..5041697105152.823859-CDS-S-firma_M_contig9398:387..504Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 388..504 -
1622828771.8022192-CDS-S-firma_M_contig9398:1164..13661622828771.8022192-CDS-S-firma_M_contig9398:1164..1366Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 1165..1366 -
1697105152.8363574-CDS-S-firma_M_contig9398:1164..13661697105152.8363574-CDS-S-firma_M_contig9398:1164..1366Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 1165..1366 -
1622828771.814397-CDS-S-firma_M_contig9398:1742..19021622828771.814397-CDS-S-firma_M_contig9398:1742..1902Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 1743..1902 -
1697105152.8451548-CDS-S-firma_M_contig9398:1742..19021697105152.8451548-CDS-S-firma_M_contig9398:1742..1902Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 1743..1902 -
1622828771.8258622-CDS-S-firma_M_contig9398:3713..38221622828771.8258622-CDS-S-firma_M_contig9398:3713..3822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 3714..3822 -
1697105152.854829-CDS-S-firma_M_contig9398:3713..38221697105152.854829-CDS-S-firma_M_contig9398:3713..3822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9398 3714..3822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9398.20377.1

>prot_S-firma_M_contig9398.20377.1 ID=prot_S-firma_M_contig9398.20377.1|Name=mRNA_S-firma_M_contig9398.20377.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=196bp
ARQITLVCITGIAGVVAYCGALIAYGVVERKEGDLLANCGVEGLFDYAGW
GVWTSVALVRVYRSWKILVRHTVDMWPAWGQVALISIPWLIPFVAYSIEP
DLAEFNERGNWCDINMPIDTALYVYGCVPIIGALCLSFQMRRVRKQMNFF
RMQARPLLLFLLAVGTVIFPVVENWLDSRDDIRRTWIMYDNIVVSV
back to top

mRNA from alignment at S-firma_M_contig9398:388..3822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9398.20377.1 ID=mRNA_S-firma_M_contig9398.20377.1|Name=mRNA_S-firma_M_contig9398.20377.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3435bp|location=Sequence derived from alignment at S-firma_M_contig9398:388..3822- (Sphaerotrichia firma Sfir_13m male)
GCCAGGCAAATCACGCTGGTGTGCATCACCGGCATCGCGGGAGTGGTTGC
CTACTGCGGGGCTCTGATAGCGTACGGCGTGGTGGAGAGGAAGGAAGGAG
ACCTGTTGGGTGAGAGAGGCAGAAACGCGGACGGTTTCTTGTGTTGAGTA
TCGTGGAGCTTTTTTGTTGTTGTTTTTGTTGTTGGCTCTTTTGTGCCTAC
GTATGCAGCAGGGCTCTGGAAACGAAAGCGCACAACAGCAGTGGTCGGTA
GTTTTTTGTTTTTTTTTGTTTTATTTCTCACGTTAGCCCTATAGTCCAAA
AACATCCATGGGAGCCCGTGGTCACAGAAAACTGGGCACAATCGTCGCCG
CAAAGAAACTCGGGAAAAAATATGGCACATGCACACTCTGCGATACTAAA
CTTAAGGTTAGGGTTAGGGTTGGTGTGCAGGGTGGAAAGGACGGAAAGGG
GGCCTGCTTTGTGAGAGATCGAGACACAAACAGCTTTTTTTTTTTTGTGT
TTTTTTTTTGTGTTTTTTTTTCTTGTTTTTTTTTAATGTAGGTCTCGCAG
GGTAACAGGTCAGCAGGTCTTGGAAATGGCGGCGGGCATGAGGTATCCAT
CCCGTGGTGGCTTCACCACTAAAAATGTTTCGCGTTGGTGAATATGTGCG
CATGCTCTGATGGGCGTTGTCGCTCGTTGTGTGTGTGTGTGTGTGTCGGT
GTTTTTTTCTTTTCTTTTTTCCTTCCACTATTGGATTCTGTCGTCTGCCC
CACTGGCCCCTAACCTCCACTGCGACTAGCTAGACGACCCAACCGGGGTC
ACACAGGAGGGGCGGGGTGGACCCCCTCCTGCGGTGCTGTGTGTGTGTGT
GTATGGTTGCACTTTTGTGGTTGCACTTTTGTGGTGGTGCTGTTGTTGCG
GGATGCGGGATGCGGGGCCGTTTCTTGGTGGACTGTTGGTGCTGGACTCT
TGGGTCGTGAGAAGTTTCCCGGACTTCTCTGTGTTGTTCTTCTCTTTTTT
TCTCCGAAGATCAGCTTGTTTCCGCACGTAACGCAAGATATCGAAGATAG
AACCTCCTCCCCTTCACAAGAAGAGACAAGAGCACAAGAGCTAGAGAGGC
GGGGCTAACTTCCTTGGGTTTGGCCGTCGGGTTGGGTCGTCGTTTTCTCT
CAGTTCTTTTTTTTTGCTGTCGCTTCTGCGGCGAGGTTTCATATTCACAC
GGAATGGATCCGGCCCCGCGAGCTCTTCTCTCCATCGTACTTTGATCCCG
TCGTATCTGCCATCATGCTATCATACAATGCTCTGTCAACCTCGGCACAC
GGGGTTGTACAGCGGGAGATGTACTCTGCCCCGCCCAAGCATTGGTTCTC
AACCAACGTCTAAAAGTCTAACCAACGTCTAACGTCTAAGCTATCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTATCTCGTTTTGTTTGCATTGGTTCTC
ATCCAAAGTCTAAAGTCTAAGCTCTCTCTCTCTCTCTCTCTCTGTCTCGT
TTTGTTTGCATTGGTTCTCATCCAAAGTCTAAAGTCTAAGCTCTCTCTCG
TCCTCTCTCTGTCTCGTTTGTTTGCATTGGTTCTCAACCAAAGTCTAAAG
TCTAGGCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTTGT
ATTGTCTATCGGCGTTCGGCGTGCTCGTCTGGGTGCTTTCACGATGCGTC
AGGCATGGTTCACATGACGGTGCACCCGTGATCTATGACGCATCACGCAT
ACAGCAGCAGTGGGCTAAGAAACATACCCTCAATCGTGGTGGATCCTACA
CTAAGCCCTACCGCAAAGCCCTACGCTCGACAGCAGCAGAGAGTGGCGAC
GAAATAACAAATTGAGCATCGACCCACGTTTTCCGTTTTTTCCTCATCTC
CATGATGACACATGATGCAGCCAACTGCGGGGTGGAAGGCTTGTTCGACT
ACGCGGGGTGGGGAGTGTGGACCTCCGTGGCTCTCGTGCGGGTGTACCGG
AGCTGGAAGATCCTCGTGAGACACACGGTCGACATGTGGCCGGCGTGGGG
GCAGGTGGCCCTCATCTCCATTCCCTGGCTGTGAGTGTGGGCTCGTGGTG
TATATGATAGTTGTGTTTGGACGTACCCTACCTTTGTACACACGTCGCTC
CCCTCGAGGGGCACTGCAGATCGGAGAAACGTATTCCAAGTGCCTCAAAC
GCCGGGCGTCTGTAGTCGCTTAAAATCTGTTTCGTCTCGTTGCACTCGCC
TTCTCTCTCTCTCTCTCTCTCTCTCTATCCCCCCGCCTCGTCTCCTCATT
TCTTCTCCAAAGAGACCGTCTTTATCTCCCCTCCTTACCCCGTCCGTCGT
CCCCCCCTCCTCGCCCCATCTCCCTCGCGGCAACAACAACAATGTCGAAA
CACCCACGACGCCAACATCAACATCAACATCAACATCAACACCGACATTT
TTGCAGCATCCCGTTCGTCGCGTACTCCATCGAGCCCGACCTCGCCGAGT
TCAACGAGCGCGGAAACTGGTGCGACATCAACATGCCCATCGACACGGCC
CTCTATGTCTACGGATGCGTGCCCATTATCGGCGCCCTGTGTCTCTCCTT
CCAGATGCGCAGGGTCCGCAAGCAGATGAACTTCTTCCGGATGCAGGCAA
GGCCTTTGGTTAGGGGGCGGGGCTGGTTGCGGAAGGGGGCGTCGTGTATG
CAGACGGACGGGGAGGGGGGGGGCGCACAATACCGCACGTGCGCGTTATT
GTATCCCGGGAACCCGTGCCCCTTCAAGTAAATTGGCGCTTTTTTCTCCC
AGCTTGTCTGTGAGTCCATCTCGCGGGTTTTGGTTGGTTTCGATGTCAGC
GATTCGTTCACGTTACGTACCCGTAGAGAGAGACGTTTGCCATGTTCATT
GTTCATGCTTTTTGAAAGACAACAATGGAATCAAAGACACAACCTCCCCA
CGTTGGAGACGGGACTCCGTGGGCTCAAAACGGTATTCCGTGCAGTGATG
TGGTATTGGTCCGGCCGTGAGTAGGAAAACTTTTTCTTGTTTTGGAAAGA
AGCACCAGGAAGTGAGAGACGGAACCTAACCGGGACTCCGTAGGAATATA
AACGGTACCCATACTGTAGTAGTGTAAGTAAAACAGGAGCGATGCATTGC
TGCTCCGACCGACACCCAAAGATCTCTTGCCAAGAGTCGATGAGCTAACC
GTCTCCTTCTTGCTTCGTCTGCGCCATTACGTTGGCGGGGTGGGTGCACG
CACACGCACACACGAACGCGCACATGCTCCCCTATCGTCGCGATTTCATT
TTGACACAGGTGTTGCAGCTGTTGTTCCTGCTGGCCGTCGGCACGGTCAT
CTTCCCGGTGGTCGAGAACTGGCTCGATAGCCGCGACGACATCCGCCGGA
CCTGGATCATGTACGACAACATCGTGGTGAGTGTC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9398:388..3822-

>mRNA_S-firma_M_contig9398.20377.1 ID=mRNA_S-firma_M_contig9398.20377.1|Name=mRNA_S-firma_M_contig9398.20377.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_M_contig9398:388..3822- (Sphaerotrichia firma Sfir_13m male)
GCCAGGCAAATCACGCTGGTGTGCATCACCGGCATCGCGGGAGTGGTTGC
CTACTGCGGGGCTCTGATAGCGTACGGCGTGGTGGAGAGGAAGGAAGGAG
ACCTGTTGGGCCAGGCAAATCACGCTGGTGTGCATCACCGGCATCGCGGG
AGTGGTTGCCTACTGCGGGGCTCTGATAGCGTACGGCGTGGTGGAGAGGA
AGGAAGGAGACCTGTTGGCCAACTGCGGGGTGGAAGGCTTGTTCGACTAC
GCGGGGTGGGGAGTGTGGACCTCCGTGGCTCTCGTGCGGGTGTACCGGAG
CTGGAAGATCCTCGTGAGACACACGGTCGACATGTGGCCGGCGTGGGGGC
AGGTGGCCCTCATCTCCATTCCCTGGCTCCAACTGCGGGGTGGAAGGCTT
GTTCGACTACGCGGGGTGGGGAGTGTGGACCTCCGTGGCTCTCGTGCGGG
TGTACCGGAGCTGGAAGATCCTCGTGAGACACACGGTCGACATGTGGCCG
GCGTGGGGGCAGGTGGCCCTCATCTCCATTCCCTGGCTCATCCCGTTCGT
CGCGTACTCCATCGAGCCCGACCTCGCCGAGTTCAACGAGCGCGGAAACT
GGTGCGACATCAACATGCCCATCGACACGGCCCTCTATGTCTACGGATGC
GTGCCCATTATCGGCGCCCTGTGTCTCTCCTTCCAGATGCGCAGGGTCCG
CAAGCAGATGAACTTCTTCCGGATGCAGGCAAGGCCTTTGCATCCCGTTC
GTCGCGTACTCCATCGAGCCCGACCTCGCCGAGTTCAACGAGCGCGGAAA
CTGGTGCGACATCAACATGCCCATCGACACGGCCCTCTATGTCTACGGAT
GCGTGCCCATTATCGGCGCCCTGTGTCTCTCCTTCCAGATGCGCAGGGTC
CGCAAGCAGATGAACTTCTTCCGGATGCAGGCAAGGCCTTTGCTGTTGTT
CCTGCTGGCCGTCGGCACGGTCATCTTCCCGGTGGTCGAGAACTGGCTCG
ATAGCCGCGACGACATCCGCCGGACCTGGATCATGTACGACAACATCGTG
GTGAGTGTCCTGTTGTTCCTGCTGGCCGTCGGCACGGTCATCTTCCCGGT
GGTCGAGAACTGGCTCGATAGCCGCGACGACATCCGCCGGACCTGGATCA
TGTACGACAACATCGTGGTGAGTGTC
back to top