mRNA_S-firma_M_contig9389.20362.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.610e-21 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 13 QEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGETRHELLLPSP 183
+EQLGE LHVLEGH ERITGVARLDG RL + S DG+LRVWD+ +GET H++LLPSP
Sbjct: 40 KEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 96
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.550e-20 Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 13 QEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGETRHELLLPSP 183
+EQLGE LHVLEGH +RITGVARLDG RL + S DG+LRVWD+ +GET H++LLPSP
Sbjct: 263 KEQLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 319
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A0C3D5Y3_9PEZI (Uncharacterized protein n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3D5Y3_9PEZI) HSP 1 Score: 55.1 bits (131), Expect = 2.750e-7 Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 10 FQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIET 147
+ + G++ HV +GH + +TG+ L GR+VS S+DGTLRVW++ T
Sbjct: 302 WDQSTGKLRHVYDGHYDEVTGIVALPDGRIVSVSIDGTLRVWEMST 347
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A2V3J4V3_9FLOR (Transcription initiation factor TFIID subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V3_9FLOR) HSP 1 Score: 54.3 bits (129), Expect = 5.260e-7 Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 1 LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSV-DGTLRVWDIETGETRHELLLPSP 183
+R + + E +HVL GH + V LD GRLVS S DGTLR+W+++TGE ++ + P
Sbjct: 58 VRVYDSETRECVHVLRGHSAPVVNVVSLDHGRLVSASQGDGTLRLWNVDTGEELKQVSVTKP 119
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A165I651_EXIGL (WD40 repeat-like protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165I651_EXIGL) HSP 1 Score: 53.9 bits (128), Expect = 7.160e-7 Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1
Query: 25 GEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGET 156
GE+L L GH +T V L GRLVS S D TLR+WDIETGET
Sbjct: 14 GELLPPLRGHVAGVTSVTFLADGRLVSASKDMTLRIWDIETGET 57
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A0D0BC11_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0BC11_9AGAM) HSP 1 Score: 53.1 bits (126), Expect = 1.230e-6 Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 43 LEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETG 150
L GH ++ GVA L GGR+V+CS DG+LR+WD+E+G
Sbjct: 2 LRGHTHQVRGVAHLPGGRIVTCSDDGSLRLWDLESG 37
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A165JMQ9_EXIGL (WD40 repeat-like protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165JMQ9_EXIGL) HSP 1 Score: 52.8 bits (125), Expect = 1.840e-6 Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 25 GEVLHVLEGHKERITGVARL-DGGRLVSCSVDGTLRVWDIETGET 156
G LH L GH+ + VA L DG RLVS S DGTLR+WD+ETG+T
Sbjct: 591 GPRLHSLLGHEHPVYSVAFLPDGSRLVSSSGDGTLRIWDVETGKT 635
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A6A5ZHA6_9PLEO (WD repeat protein n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5ZHA6_9PLEO) HSP 1 Score: 52.4 bits (124), Expect = 2.470e-6 Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 1 LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIE 144
+R F + G+++HV GH E +TG+ LDG ++VS S+DGT+R W ++
Sbjct: 295 VRVFDKGTGKLVHVFSGHYEEVTGLVLLDGQKVVSVSIDGTVRQWSLK 342
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: L8GIR5_ACACA (COP1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIR5_ACACA) HSP 1 Score: 52.0 bits (123), Expect = 3.420e-6 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query: 22 LGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGET 156
L E L VL GH + ++ + LD RLVS S+DGTLR+WD+ T E+
Sbjct: 462 LREPLFVLRGHDKAVSHIQFLDSSRLVSASIDGTLRLWDVNTAES 506
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A2D8YX99_9PROT (Cytochrome c domain-containing protein n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D8YX99_9PROT) HSP 1 Score: 51.2 bits (121), Expect = 6.360e-6 Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 25 GEVLHVLEGHKERITGVARLDGG-RLVSCSVDGTLRVWDIETGET 156
G + VLEGH++ IT + L GG RL++ S+D TLRVWD+++GET
Sbjct: 208 GRLQRVLEGHRQGITKMNTLPGGARLLTASIDRTLRVWDVKSGET 252 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9389.20362.1 >prot_S-firma_M_contig9389.20362.1 ID=prot_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=61bp LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGback to top mRNA from alignment at S-firma_M_contig9389:434..616- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9389.20362.1 ID=mRNA_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=183bp|location=Sequence derived from alignment at S-firma_M_contig9389:434..616- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9389:434..616- >mRNA_S-firma_M_contig9389.20362.1 ID=mRNA_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=366bp|location=Sequence derived from alignment at S-firma_M_contig9389:434..616- (Sphaerotrichia firma Sfir_13m male)back to top |