mRNA_S-firma_M_contig9389.20362.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9389.20362.1
Unique NamemRNA_S-firma_M_contig9389.20362.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.610e-21
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   13 QEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGETRHELLLPSP 183
            +EQLGE LHVLEGH ERITGVARLDG RL + S DG+LRVWD+ +GET H++LLPSP
Sbjct:   40 KEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 96          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.550e-20
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   13 QEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGETRHELLLPSP 183
            +EQLGE LHVLEGH +RITGVARLDG RL + S DG+LRVWD+ +GET H++LLPSP
Sbjct:  263 KEQLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 319          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A0C3D5Y3_9PEZI (Uncharacterized protein n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3D5Y3_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 2.750e-7
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   10 FQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIET 147
            + +  G++ HV +GH + +TG+  L  GR+VS S+DGTLRVW++ T
Sbjct:  302 WDQSTGKLRHVYDGHYDEVTGIVALPDGRIVSVSIDGTLRVWEMST 347          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A2V3J4V3_9FLOR (Transcription initiation factor TFIID subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V3_9FLOR)

HSP 1 Score: 54.3 bits (129), Expect = 5.260e-7
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSV-DGTLRVWDIETGETRHELLLPSP 183
            +R +  +  E +HVL GH   +  V  LD GRLVS S  DGTLR+W+++TGE   ++ +  P
Sbjct:   58 VRVYDSETRECVHVLRGHSAPVVNVVSLDHGRLVSASQGDGTLRLWNVDTGEELKQVSVTKP 119          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A165I651_EXIGL (WD40 repeat-like protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165I651_EXIGL)

HSP 1 Score: 53.9 bits (128), Expect = 7.160e-7
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   25 GEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGET 156
            GE+L  L GH   +T V  L  GRLVS S D TLR+WDIETGET
Sbjct:   14 GELLPPLRGHVAGVTSVTFLADGRLVSASKDMTLRIWDIETGET 57          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A0D0BC11_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0BC11_9AGAM)

HSP 1 Score: 53.1 bits (126), Expect = 1.230e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   43 LEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETG 150
            L GH  ++ GVA L GGR+V+CS DG+LR+WD+E+G
Sbjct:    2 LRGHTHQVRGVAHLPGGRIVTCSDDGSLRLWDLESG 37          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A165JMQ9_EXIGL (WD40 repeat-like protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165JMQ9_EXIGL)

HSP 1 Score: 52.8 bits (125), Expect = 1.840e-6
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   25 GEVLHVLEGHKERITGVARL-DGGRLVSCSVDGTLRVWDIETGET 156
            G  LH L GH+  +  VA L DG RLVS S DGTLR+WD+ETG+T
Sbjct:  591 GPRLHSLLGHEHPVYSVAFLPDGSRLVSSSGDGTLRIWDVETGKT 635          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A6A5ZHA6_9PLEO (WD repeat protein n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5ZHA6_9PLEO)

HSP 1 Score: 52.4 bits (124), Expect = 2.470e-6
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIE 144
            +R F +  G+++HV  GH E +TG+  LDG ++VS S+DGT+R W ++
Sbjct:  295 VRVFDKGTGKLVHVFSGHYEEVTGLVLLDGQKVVSVSIDGTVRQWSLK 342          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: L8GIR5_ACACA (COP1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIR5_ACACA)

HSP 1 Score: 52.0 bits (123), Expect = 3.420e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   22 LGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETGET 156
            L E L VL GH + ++ +  LD  RLVS S+DGTLR+WD+ T E+
Sbjct:  462 LREPLFVLRGHDKAVSHIQFLDSSRLVSASIDGTLRLWDVNTAES 506          
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Match: A0A2D8YX99_9PROT (Cytochrome c domain-containing protein n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D8YX99_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 6.360e-6
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   25 GEVLHVLEGHKERITGVARLDGG-RLVSCSVDGTLRVWDIETGET 156
            G +  VLEGH++ IT +  L GG RL++ S+D TLRVWD+++GET
Sbjct:  208 GRLQRVLEGHRQGITKMNTLPGGARLLTASIDRTLRVWDVKSGET 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9389.20362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C2_ECTSI2.610e-2173.68F-box domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KY61_9PHAE2.550e-2071.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0C3D5Y3_9PEZI2.750e-745.65Uncharacterized protein n=1 Tax=Oidiodendron maius... [more]
A0A2V3J4V3_9FLOR5.260e-741.94Transcription initiation factor TFIID subunit 5 n=... [more]
A0A165I651_EXIGL7.160e-761.36WD40 repeat-like protein n=1 Tax=Exidia glandulosa... [more]
A0A0D0BC11_9AGAM1.230e-658.33Uncharacterized protein (Fragment) n=1 Tax=Suillus... [more]
A0A165JMQ9_EXIGL1.840e-660.00WD40 repeat-like protein n=1 Tax=Exidia glandulosa... [more]
A0A6A5ZHA6_9PLEO2.470e-643.75WD repeat protein n=1 Tax=Lophiotrema nucula TaxID... [more]
L8GIR5_ACACA3.420e-651.11COP1, putative n=1 Tax=Acanthamoeba castellanii st... [more]
A0A2D8YX99_9PROT6.360e-653.33Cytochrome c domain-containing protein n=2 Tax=Rho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9389contigS-firma_M_contig9389:434..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D7G3C2
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-21_002790.1
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828770.2701364-CDS-S-firma_M_contig9389:433..6161622828770.2701364-CDS-S-firma_M_contig9389:433..616Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9389 434..616 -
1697105151.9073262-CDS-S-firma_M_contig9389:433..6161697105151.9073262-CDS-S-firma_M_contig9389:433..616Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9389 434..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9389.20362.1prot_S-firma_M_contig9389.20362.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9389 434..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9389.20362.1

>prot_S-firma_M_contig9389.20362.1 ID=prot_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=61bp
LRRFQEQLGEVLHVLEGHKERITGVARLDGGRLVSCSVDGTLRVWDIETG
ETRHELLLPSP
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mRNA from alignment at S-firma_M_contig9389:434..616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9389.20362.1 ID=mRNA_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=183bp|location=Sequence derived from alignment at S-firma_M_contig9389:434..616- (Sphaerotrichia firma Sfir_13m male)
CTCCGGAGATTTCAGGAACAGCTCGGCGAGGTGCTCCACGTGCTCGAGGG GCACAAGGAGCGCATCACCGGGGTCGCCCGGCTGGACGGGGGCAGGCTGG TGTCTTGCTCGGTTGACGGCACCCTGAGGGTCTGGGACATCGAGACGGGG GAGACGCGGCACGAGCTGCTGCTGCCCTCGCCG
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Coding sequence (CDS) from alignment at S-firma_M_contig9389:434..616-

>mRNA_S-firma_M_contig9389.20362.1 ID=mRNA_S-firma_M_contig9389.20362.1|Name=mRNA_S-firma_M_contig9389.20362.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=366bp|location=Sequence derived from alignment at S-firma_M_contig9389:434..616- (Sphaerotrichia firma Sfir_13m male)
CTCCGGAGATTTCAGGAACAGCTCGGCGAGGTGCTCCACGTGCTCGAGGG
GCACAAGGAGCGCATCACCGGGGTCGCCCGGCTGGACGGGGGCAGGCTGG
TGTCTTGCTCGGTTGACGGCACCCTGAGGGTCTGGGACATCGAGACGGGG
GAGACGCGGCACGAGCTGCTGCTGCCCTCGCCGCTCCGGAGATTTCAGGA
ACAGCTCGGCGAGGTGCTCCACGTGCTCGAGGGGCACAAGGAGCGCATCA
CCGGGGTCGCCCGGCTGGACGGGGGCAGGCTGGTGTCTTGCTCGGTTGAC
GGCACCCTGAGGGTCTGGGACATCGAGACGGGGGAGACGCGGCACGAGCT
GCTGCTGCCCTCGCCG
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