mRNA_S-firma_M_contig934.20307.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig934.20307.1
Unique NamemRNA_S-firma_M_contig934.20307.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 4.480e-121
Identity = 201/304 (66.12%), Postives = 227/304 (74.67%), Query Frame = 1
Query:   37 MMMGEDEEQYAEEPQIPSSLNLPLLSRNDATWKEF-GADLIADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIVN-------MSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEAXXXXXXXXXXXXXXXXXXXXXXXXGEATESRST---------TSSWLGTSMVNGAPMDAATHPGAAAILGRGSTPQDLEADAFWLFSAVMTGLEGFYEHGTNNASSS 897
            MMM E EE+   +P+  ++L LPLLSR++ TW++F GA+++AD A RGEW DDN+R LLWRLLLGV+P  SPPSEWATEMANKR ++RRL AEHRVDI         MSANPL  GSGSGDDPW+HFY+RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLS+WADLNT TAYRQGMHEVLAPLIL LEKE               XXXXXXXXXX                   S W+G S+VNG P++A THP  AAILG GSTP+DLEADAFWLFSAVM+GLE FYEHG    S+S
Sbjct:    1 MMMNESEERSTSDPKDRATLALPLLSRDNNTWEQFQGANIVADTAHRGEWNDDNSRGLLWRLLLGVVPRDSPPSEWATEMANKRGEYRRLKAEHRVDISKVLDTTDPMSANPLFSGSGSGDDPWSHFYERKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTGTAYRQGMHEVLAPLILVLEKEVAAATRAEAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTS 304          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 7.820e-69
Identity = 109/135 (80.74%), Postives = 116/135 (85.93%), Query Frame = 1
Query:  169 LRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIVN-------MSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQ 552
            + GEW DDN+R LLWRLLLGVIP  SPPSEWATEMANKR ++RRL AEHRVDI         MSANPL  GSGSGDDPW+HFY+RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLS+WADLNT TAYRQ
Sbjct:    6 MSGEWNDDNSRGLLWRLLLGVIPRDSPPSEWATEMANKRGEYRRLKAEHRVDISKVLDTTDPMSANPLFSGSGSGDDPWSHFYERKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTETAYRQ 140          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A7S0YK08_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YK08_9CRYP)

HSP 1 Score: 96.3 bits (238), Expect = 4.430e-20
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  166 ALRGEWKDDNTRALLWRLLLGVIPGG--SPPSEWATEMANKRAQHRRLAAEHRVDIVNMS--ANPLL--PGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEA 603
            A+ G  ++   R+L WRL LGV+P G  S P+ W   +  +RA +     E  VD    S  A+PL+  P + + D  W  +++ +++   I+ DLERL P    D F     Q  +L  L++WA LN AT+YRQGMHEVLA ++  L ++A
Sbjct:   17 AMTGGLRNSTIRSLAWRLFLGVLPAGECSLPA-WVAAVEEQRASYDARCEEFLVDPYKQSDGADPLVNNPLAQTEDSAWTKYFELRQLQKDIQIDLERLNPDD--DFFRGAGVQGAMLRALTVWACLNPATSYRQGMHEVLAHIVKVLHEDA 165          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A2R5GTG8_9STRA (TBC1 domain family member 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTG8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-18
Identity = 63/196 (32.14%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  100 LPLLSRNDA-TWKEFGADLIAD--AALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIV--------NMSANPL----------------LPGSGSG-DDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEA 603
            L +   +DA  W+    D++A   A+L+G       R+L WR   G +P  + P   A    N  A  RR     R  +V        +   +PL                  G+ +G  +PW  F++ KE+ + I+ DLERL+PTGC D F+ P   ++L  VL  W+ L+  T+YRQGMHE+ APL+  L  +A
Sbjct:   13 LKVAKGDDACAWEALADDMVAGNLASLQGL----GARSLAWRAACGTLPVAASPRAIAATWPNVAADLRREYEALRESLVVDPDEAADDGDFDPLGGXXXXXXXXXXXXHGSSGAKTGVSNPWEEFHKDKELLEEIRQDLERLYPTGCDDFFMEPTVSKVLQGVLFTWSKLHPDTSYRQGMHELAAPLLYCLHADA 204          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A7S0LIA7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIA7_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 2.730e-18
Identity = 65/176 (36.93%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  115 RNDATWKEFGAD--LIADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWAT---EMANKRAQHRRLAAEHRVD------IVNMS-ANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPAR-QELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEA 603
            RND      G D  L+  AA+ G  +D   R L WR LL  +P G P    +T   +    R ++  L  +H +D       +++S ANPL   + S   PW+ F++ +E+ + IK DL RL P   G  F + AR QE +  +L +W  L+   +YRQGMHE+LAPL   LE EA
Sbjct:    6 RNDFKRLFLGIDERLLFRAAMDGSLRDCPVRGLAWRYLLATLPAGVPLKRVSTLVDQTIAARREYMALREKHCIDPRTSGESLDISLANPLSQDANS---PWSEFFEFEELREEIKRDLMRLHP---GHDFFSGARVQETMERILFVWCKLHPNLSYRQGMHELLAPLYHVLETEA 175          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A0E9NEK8_SAICN (Rab-GAP TBC domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NEK8_SAICN)

HSP 1 Score: 95.5 bits (236), Expect = 3.240e-18
Identity = 64/198 (32.32%), Postives = 99/198 (50.00%), Query Frame = 1
Query:   10 SSVAAVCAAMMMGEDEEQYAEEPQIPSSLNLPLLSRNDATWKEFGADLIADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIVNMSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEA 603
            S++    AA     D+  Y  + ++ S L+ P  + ND          +  AAL         R+L W+L L V+P   P S W+  ++ +RA++  L A +    V  S +PL     S   PW   Y  +E+ +TI  D +R FP      F  P  Q++LL VL  ++ LN  T+YRQGMHE+LAP++ A++ +A
Sbjct:   90 SAIYTSAAAPQTHLDQSPYQHQYRMTSPLDFPR-TIND----------LRQAALNNT-PTSVPRSLRWKLFLRVLPSYHP-SSWSDAISRERARYAELKARYTAPGVVESGDPLSQDESS---PWKERYADEELKETIIQDTQRTFPDI--PFFRLPRTQQILLDVLFTYSKLNPDTSYRQGMHELLAPILFAVQGDA 269          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: A0A7S4UQR4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UQR4_GUITH)

HSP 1 Score: 91.7 bits (226), Expect = 3.100e-17
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  154 IADAALRGEWKDDNTRALLWRLLLGVIPGGSPPS-EWATEMANKRAQHRRLAAEHRVDIVN-------MSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPAR-QELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKE 600
            + D    G  KD   R++ WR+ LGV+P  S     W T M  +R +++ L  E  +D          +  NPL    GS    W  +++ +E+  +I  D+ERL      D FL     Q+ +L VL++W++L++  +YRQGMHE+LAP++  L ++
Sbjct:   29 LRDQVFEGYLKDSPMRSVCWRVFLGVLPTDSASFLSWVTIMKERRKRYQELKEEFLIDPYKDGGQKDPLHDNPLAQAEGS---VWKKYFELQELQKSIMIDIERL---NVEDEFLKQEEAQKAMLRVLTVWSNLHSELSYRQGMHELLAPIVAVLHRD 180          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: UPI001C710424 (TBC1 domain family member 5-like isoform X1 n=11 Tax=Penaeus TaxID=133894 RepID=UPI001C710424)

HSP 1 Score: 92.0 bits (227), Expect = 4.950e-17
Identity = 60/199 (30.15%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   13 SVAAVCAAMMMGEDEEQYAEEPQIPSSLNLPLLSRNDATWKEFGADLIADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIV----NMSANPLL--PGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILAL 591
            S AA    + M +++   A +P       LP  +      K  G D +      GE +    R++ WR+ LGV+PG    ++W   + ++R ++  +   HR+ I     + + +PLL  P S     PWN +++  E+   I+ D+ R FP    + F +   ++L+++VL  +A  N   +YRQGMHEVLAPLI  L
Sbjct:   40 STAAPTERLSMRQEDHFSATQPTRVLGGGLPYAAEWAQICKCAGTDAMQSLGQSGEMRASRFRSVCWRIYLGVLPGDH--TQWLKVIRDERERYEDI--RHRLMITPGLGDETLDPLLNNPLSQHEQSPWNQYFEDSELKKLIRQDVVRTFPEV--EFFQSLRIRDLMVTVLFCYARQNPDVSYRQGMHEVLAPLIFVL 232          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: L1JXD2_GUITC (Rab-GAP TBC domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JXD2_GUITC)

HSP 1 Score: 91.7 bits (226), Expect = 6.040e-17
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  154 IADAALRGEWKDDNTRALLWRLLLGVIPGGSPPS-EWATEMANKRAQHRRLAAEHRVDIVN-------MSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPAR-QELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKE 600
            + D    G  KD   R++ WR+ LGV+P  S     W T M  +R +++ L  E  +D          +  NPL    GS    W  +++ +E+  +I  D+ERL      D FL     Q+ +L VL++W++L++  +YRQGMHE+LAP++  L ++
Sbjct:   29 LRDQVFEGYLKDSPMRSVCWRVFLGVLPTDSASFLSWVTIMKERRKRYQELKEEFLIDPYKDGGQKDPLHDNPLAQAEGS---VWKKYFELQELQKSIMIDIERL---NVEDEFLKQEEAQKAMLRVLTVWSNLHSELSYRQGMHELLAPIVAVLHRD 180          
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Match: UPI00106D8B13 (TBC1 domain family member 5-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8B13)

HSP 1 Score: 91.7 bits (226), Expect = 6.670e-17
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   49 EDEEQYAEEPQIPSSLNLPLLSRNDATWKE-FGADL----IADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRRLAAEHRVDIVNMSANP-----LLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFPTGCGDHFLAPAR-QELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKEA 603
            E  E   E   IP+     L    ++ W++ FG +     + + AL G  +D   R + WRL LG +        W+  +   R ++  L +   +D  +   +        P S   D PW+ +++ K++TD I  DL RLFP   G H+    + +++LL +L  +A +N    Y+QGMHEVLAPL+  LE E+
Sbjct:   46 EQGESSNENIYIPAVTKESL----ESEWQQMFGTENYKKDLQNLALTGRLRDRRFRGVCWRLFLGCL--SDDVGHWSETVCESRTRYENLKSMFFIDPYSSKVDEDNVQVFDPLSQEIDSPWSQYFEDKKLTDLIYQDLNRLFP---GMHYFQSKKIKDVLLHILFCYAKMNPNVGYKQGMHEVLAPLLFVLENES 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig934.20307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGW7_9PHAE4.480e-12166.12Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FWI0_ECTSI7.820e-6980.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0YK08_9CRYP4.430e-2037.50Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2R5GTG8_9STRA1.570e-1832.14TBC1 domain family member 5 n=1 Tax=Hondaea fermen... [more]
A0A7S0LIA7_9EUKA2.730e-1836.93Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A0E9NEK8_SAICN3.240e-1832.32Rab-GAP TBC domain-containing protein n=2 Tax=Sait... [more]
A0A7S4UQR4_GUITH3.100e-1732.28Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
UPI001C7104244.950e-1730.15TBC1 domain family member 5-like isoform X1 n=11 T... [more]
L1JXD2_GUITC6.040e-1732.28Rab-GAP TBC domain-containing protein n=1 Tax=Guil... [more]
UPI00106D8B136.670e-1730.10TBC1 domain family member 5-like isoform X1 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig934contigS-firma_M_contig934:22118..24064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue5.3e-58
Seed eggNOG ortholog2880.D7FWI0
Preferred nameTBC1D5
KEGG rclassRC00002,RC00078
KEGG koko:K01765,ko:K03843,ko:K18081,ko:K18469
KEGG ReactionR03428,R03429,R05973,R06238
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,map00510,map00513,map00562,map01100,map04070
KEGG ModuleM00055,M00132
GOsGO:0002090,GO:0002092,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009605,GO:0009893,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010604,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0023052,GO:0030100,GO:0030234,GO:0030695,GO:0030904,GO:0031000,GO:0031090,GO:0031156,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035612,GO:0036270,GO:0042147,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043547,GO:0043900,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045807,GO:0046907,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0060627,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:1901698,GO:1903664,GO:1903665,GO:1905394
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1091@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-26_006540.1
EC2.4.1.132,2.4.1.257,2.7.1.159,3.1.3.64,3.1.3.95
COG Functional cat.H
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size915
Cds size915
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig934.20307.1prot_S-firma_M_contig934.20307.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig934 22118..24064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828764.6405241-CDS-S-firma_M_contig934:22117..222921622828764.6405241-CDS-S-firma_M_contig934:22117..22292Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 22118..22292 +
1697105148.670216-CDS-S-firma_M_contig934:22117..222921697105148.670216-CDS-S-firma_M_contig934:22117..22292Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 22118..22292 +
1622828764.653986-CDS-S-firma_M_contig934:22634..228581622828764.653986-CDS-S-firma_M_contig934:22634..22858Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 22635..22858 +
1697105148.686731-CDS-S-firma_M_contig934:22634..228581697105148.686731-CDS-S-firma_M_contig934:22634..22858Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 22635..22858 +
1622828764.6675665-CDS-S-firma_M_contig934:23291..234441622828764.6675665-CDS-S-firma_M_contig934:23291..23444Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 23292..23444 +
1697105148.6955981-CDS-S-firma_M_contig934:23291..234441697105148.6955981-CDS-S-firma_M_contig934:23291..23444Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 23292..23444 +
1622828764.6813748-CDS-S-firma_M_contig934:23701..240641622828764.6813748-CDS-S-firma_M_contig934:23701..24064Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 23702..24064 +
1697105148.7052813-CDS-S-firma_M_contig934:23701..240641697105148.7052813-CDS-S-firma_M_contig934:23701..24064Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig934 23702..24064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig934.20307.1

>prot_S-firma_M_contig934.20307.1 ID=prot_S-firma_M_contig934.20307.1|Name=mRNA_S-firma_M_contig934.20307.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=305bp
HPHSSVAAVCAAMMMGEDEEQYAEEPQIPSSLNLPLLSRNDATWKEFGAD
LIADAALRGEWKDDNTRALLWRLLLGVIPGGSPPSEWATEMANKRAQHRR
LAAEHRVDIVNMSANPLLPGSGSGDDPWNHFYQRKEMTDTIKADLERLFP
TGCGDHFLAPARQELLLSVLSLWADLNTATAYRQGMHEVLAPLILALEKE
AAAASRSDTTTNRSAAGAVGGGGGSGEATESRSTTSSWLGTSMVNGAPMD
AATHPGAAAILGRGSTPQDLEADAFWLFSAVMTGLEGFYEHGTNNASSSR
RPPGG
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mRNA from alignment at S-firma_M_contig934:22118..24064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig934.20307.1 ID=mRNA_S-firma_M_contig934.20307.1|Name=mRNA_S-firma_M_contig934.20307.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1947bp|location=Sequence derived from alignment at S-firma_M_contig934:22118..24064+ (Sphaerotrichia firma Sfir_13m male)
CATCCACACAGCTCGGTTGCAGCTGTGTGCGCGGCCATGATGATGGGCGA AGATGAAGAACAATACGCGGAAGAGCCCCAGATCCCTTCCTCTCTCAATC TGCCGCTCTTGAGCCGCAATGACGCCACCTGGAAGGAGTTTGGTGCAGAC TTAATCGCGGATGCTGCTCTCCGAGGTACACGTACCATGCCTGGTGGAAC AAACAATCCATCTTCTCGTGCTCACGCCCATACCTCCTCGGAAAGCTATC GAAGTTGCCTGTTTGTCGGCAAGCTACTGATGCAACAGTCTTTGTAGGAG GTGCTCTCTGCAGGCACTCCGTTTGCGTCGATATCAAGGTAGACAGGGGG TTCGTCCGCTACTTGTCCGGCGAAGCACGTGAACTTTCTCACAGGTCAGC GCCACAGCAAAGCGTGCCAGGCCCTGTACGTCGCTCACAACCAGCATGAC CACGTGGCTTCATCATCATTCGTTTGCCGCGCTGGCTTTGATGCATTCGC CTCGCCCCGACAATTAGGTGAGTGGAAGGACGACAACACCAGAGCTTTGC TGTGGAGACTGCTCCTCGGCGTGATACCTGGAGGTTCCCCTCCGTCGGAA TGGGCGACGGAGATGGCCAACAAGCGGGCGCAGCACCGCCGCCTTGCGGC GGAGCACAGGGTTGACATCGTCAACATGTCGGCCAATCCGCTGCTTCCAG GGTCAGGGTCGGGCGACGATCCCTGGAATCATTTTTACCAGGTTAGTGGC GGCCAATCCCCCGCTAGCGGTGGTCAAAGTTTGGGTGTATTTTGGTGCGC ATGTTTCGCCGCGTTCGCTCGATTTGTCGTGAGGTTTCCACCGAAACTAC CGCTGCTGTAGCTGTCGGTTGTGGTTGAGCCTATCGCGGCAAGCCCTCGG TTCAGCGTGTAGAGGTAGCTGTAACAGCTTGCATTCCCCACAGGTGTTTG CAGGCTACATGTTTTGAAAAGAGGCCGTTGATTTGTTTTGATCGGCATCC TTTCAGCCAGAACCTCTCTCTTCCCCGCCTCACACTCGAGACTCGAGACT ACAGCAGTAGCTCCTCTCGCCCCCCGTGCCCCGCAGACGCCCCGTCGTAT GCTACTATTGACGCAAACTACCCCCCCCCTCAAAAAACTCTTGGCAACAC GACACGACGGGAAACGACCCGCAGCGCAAGGAGATGACGGACACGATAAA GGCCGACCTCGAGCGCCTATTTCCGACCGGCTGCGGCGACCACTTCTTGG CGCCGGCGAGGCAGGAGCTCCTCCTCAGCGTGCTCTCGCTGTGGGCGGAC TTGAACACGGCGACGGCGTACCGGCAGGTAAGTCTGAAGTCTCAGCTTTG CAAGGACCACACCAGACAGGTGTATTTTCCCTCCCGTCTTGGGACACGCG GCCGCTGTTGGAGATGCCTCGTTCAGTGCCACATGGTCAATGTACCGTCG AAACCGGGGATTCCACACGACGCTGCGAAACACCAGGCCAGGAGCAAGTT AAACGTGGTTTCGAACTCACTCGCGCCGAACAACGATTTTATCTCATCGC CCCACACCAACCCCCATTTCGACAACAACGGCAGGGCATGCACGAGGTCC TGGCCCCACTAATCCTCGCACTCGAGAAGGAAGCCGCCGCAGCCTCTCGC TCGGACACCACCACCAACCGCTCTGCCGCGGGCGCGGTGGGCGGCGGCGG TGGCAGCGGCGAGGCGACAGAATCGAGATCAACGACGTCGTCGTGGCTGG GCACGTCGATGGTGAACGGGGCGCCGATGGACGCCGCCACCCACCCGGGC GCTGCGGCCATTCTCGGCCGCGGGTCCACCCCGCAAGACCTCGAGGCGGA CGCCTTCTGGCTCTTCAGCGCGGTCATGACGGGGCTGGAAGGATTTTACG AGCACGGGACGAATAACGCCTCGTCTAGTCGAAGACCCCCCGGCGGC
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Coding sequence (CDS) from alignment at S-firma_M_contig934:22118..24064+

>mRNA_S-firma_M_contig934.20307.1 ID=mRNA_S-firma_M_contig934.20307.1|Name=mRNA_S-firma_M_contig934.20307.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1830bp|location=Sequence derived from alignment at S-firma_M_contig934:22118..24064+ (Sphaerotrichia firma Sfir_13m male)
CATCCACACAGCTCGGTTGCAGCTGTGTGCGCGGCCATGATGATGGGCGA
AGATGAAGAACAATACGCGGAAGAGCCCCAGATCCCTTCCTCTCTCAATC
TGCCGCTCTTGAGCCGCAATGACGCCACCTGGAAGGAGTTTGGTGCAGAC
TTAATCGCGGATGCTGCTCTCCGAGCATCCACACAGCTCGGTTGCAGCTG
TGTGCGCGGCCATGATGATGGGCGAAGATGAAGAACAATACGCGGAAGAG
CCCCAGATCCCTTCCTCTCTCAATCTGCCGCTCTTGAGCCGCAATGACGC
CACCTGGAAGGAGTTTGGTGCAGACTTAATCGCGGATGCTGCTCTCCGAG
GTGAGTGGAAGGACGACAACACCAGAGCTTTGCTGTGGAGACTGCTCCTC
GGCGTGATACCTGGAGGTTCCCCTCCGTCGGAATGGGCGACGGAGATGGC
CAACAAGCGGGCGCAGCACCGCCGCCTTGCGGCGGAGCACAGGGTTGACA
TCGTCAACATGTCGGCCAATCCGCTGCTTCCAGGGTCAGGGTCGGGCGAC
GATCCCTGGAATCATTTTTACCAGGTGAGTGGAAGGACGACAACACCAGA
GCTTTGCTGTGGAGACTGCTCCTCGGCGTGATACCTGGAGGTTCCCCTCC
GTCGGAATGGGCGACGGAGATGGCCAACAAGCGGGCGCAGCACCGCCGCC
TTGCGGCGGAGCACAGGGTTGACATCGTCAACATGTCGGCCAATCCGCTG
CTTCCAGGGTCAGGGTCGGGCGACGATCCCTGGAATCATTTTTACCAGCG
CAAGGAGATGACGGACACGATAAAGGCCGACCTCGAGCGCCTATTTCCGA
CCGGCTGCGGCGACCACTTCTTGGCGCCGGCGAGGCAGGAGCTCCTCCTC
AGCGTGCTCTCGCTGTGGGCGGACTTGAACACGGCGACGGCGTACCGGCA
GCGCAAGGAGATGACGGACACGATAAAGGCCGACCTCGAGCGCCTATTTC
CGACCGGCTGCGGCGACCACTTCTTGGCGCCGGCGAGGCAGGAGCTCCTC
CTCAGCGTGCTCTCGCTGTGGGCGGACTTGAACACGGCGACGGCGTACCG
GCAGGGCATGCACGAGGTCCTGGCCCCACTAATCCTCGCACTCGAGAAGG
AAGCCGCCGCAGCCTCTCGCTCGGACACCACCACCAACCGCTCTGCCGCG
GGCGCGGTGGGCGGCGGCGGTGGCAGCGGCGAGGCGACAGAATCGAGATC
AACGACGTCGTCGTGGCTGGGCACGTCGATGGTGAACGGGGCGCCGATGG
ACGCCGCCACCCACCCGGGCGCTGCGGCCATTCTCGGCCGCGGGTCCACC
CCGCAAGACCTCGAGGCGGACGCCTTCTGGCTCTTCAGCGCGGTCATGAC
GGGGCTGGAAGGATTTTACGAGCACGGGACGAATAACGCCTCGTCTAGTC
GAAGACCCCCCGGCGGCGGCATGCACGAGGTCCTGGCCCCACTAATCCTC
GCACTCGAGAAGGAAGCCGCCGCAGCCTCTCGCTCGGACACCACCACCAA
CCGCTCTGCCGCGGGCGCGGTGGGCGGCGGCGGTGGCAGCGGCGAGGCGA
CAGAATCGAGATCAACGACGTCGTCGTGGCTGGGCACGTCGATGGTGAAC
GGGGCGCCGATGGACGCCGCCACCCACCCGGGCGCTGCGGCCATTCTCGG
CCGCGGGTCCACCCCGCAAGACCTCGAGGCGGACGCCTTCTGGCTCTTCA
GCGCGGTCATGACGGGGCTGGAAGGATTTTACGAGCACGGGACGAATAAC
GCCTCGTCTAGTCGAAGACCCCCCGGCGGC
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