mRNA_S-firma_M_contig9336.20300.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9336.20300.1
Unique NamemRNA_S-firma_M_contig9336.20300.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9336.20300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9336contigS-firma_M_contig9336:2030..2871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size844
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828763.917903-CDS-S-firma_M_contig9336:2029..26051622828763.917903-CDS-S-firma_M_contig9336:2029..2605Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9336 2030..2605 +
1697105148.2664886-CDS-S-firma_M_contig9336:2029..26051697105148.2664886-CDS-S-firma_M_contig9336:2029..2605Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9336 2030..2605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828763.9309757-UTR-S-firma_M_contig9336:2605..28711622828763.9309757-UTR-S-firma_M_contig9336:2605..2871Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9336 2606..2871 +
1697105148.2795668-UTR-S-firma_M_contig9336:2605..28711697105148.2795668-UTR-S-firma_M_contig9336:2605..2871Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9336 2606..2871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9336.20300.1prot_S-firma_M_contig9336.20300.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9336 2030..2605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9336.20300.1

>prot_S-firma_M_contig9336.20300.1 ID=prot_S-firma_M_contig9336.20300.1|Name=mRNA_S-firma_M_contig9336.20300.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=192bp
LEPRHALLFLSLLFPPSSVDLSALICERRQTKRILTSCGLSHVGLWWKPR
NRLPLQTAAAVVWNTSCTHVTRWVAEESNSRQSVSDVTCASESIVELLAW
ASWTVAQECIACRRLDQSTRTTEIRIAKTIDRLLPYTTQDKPPPVDTFGW
ALKNIVTGSLILWGVAYLLCTRVIGYWYKAGSIGGVITMGV*
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mRNA from alignment at S-firma_M_contig9336:2030..2871+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9336.20300.1 ID=mRNA_S-firma_M_contig9336.20300.1|Name=mRNA_S-firma_M_contig9336.20300.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=842bp|location=Sequence derived from alignment at S-firma_M_contig9336:2030..2871+ (Sphaerotrichia firma Sfir_13m male)
CTGGAACCCAGGCACGCATTATTGTTCTTGTCGCTCCTCTTTCCCCCCAG
CAGTGTAGACCTCTCAGCCCTGATTTGTGAACGGCGCCAAACCAAACGCA
TCTTGACTTCCTGTGGGTTATCACATGTCGGCCTCTGGTGGAAACCGAGA
AACCGTCTTCCTTTGCAAACTGCTGCTGCTGTAGTCTGGAATACTAGCTG
TACACATGTAACCCGCTGGGTTGCGGAGGAATCAAACAGTCGTCAATCGG
TTAGCGATGTAACCTGTGCATCGGAGTCGATTGTTGAATTGTTGGCTTGG
GCCAGCTGGACCGTTGCACAAGAATGCATTGCCTGTAGGCGTCTCGATCA
AAGTACACGCACCACTGAAATTCGAATCGCGAAAACAATCGATAGGCTAC
TACCGTATACGACACAAGATAAGCCACCCCCCGTTGATACATTTGGTTGG
GCGCTTAAAAATATTGTCACCGGGTCGCTAATCTTGTGGGGGGTGGCTTA
TCTTTTGTGTACCCGGGTGATAGGGTACTGGTACAAAGCGGGCTCCATAG
GGGGTGTGATTACCATGGGGGTGTGATAACCGTGGGGTGTGATATTACTG
CCTGCCAAGACTGCTGCTGTAGCGTCTGCAGTCTGTGGCAACATCGGTGT
GTGGTGTATGCGGTGTGAGAACAACAATCGGGGGTTAAATCATCGATGTC
GGCCATTTCATACTTGCTTTTGAAGGAGGTGCACCACAACCATAATTGGA
GGTGGATGCAAAGAAAGGGGTGTCGAAAAACATCCGCAGCATACGGCCCA
CGCATGCTTCACATAAAACCCGGGCATGTACGCCACCCCGTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9336:2030..2871+

>mRNA_S-firma_M_contig9336.20300.1 ID=mRNA_S-firma_M_contig9336.20300.1|Name=mRNA_S-firma_M_contig9336.20300.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1152bp|location=Sequence derived from alignment at S-firma_M_contig9336:2030..2871+ (Sphaerotrichia firma Sfir_13m male)
CTGGAACCCAGGCACGCATTATTGTTCTTGTCGCTCCTCTTTCCCCCCAG
CAGTGTAGACCTCTCAGCCCTGATTTGTGAACGGCGCCAAACCAAACGCA
TCTTGACTTCCTGTGGGTTATCACATGTCGGCCTCTGGTGGAAACCGAGA
AACCGTCTTCCTTTGCAAACTGCTGCTGCTGTAGTCTGGAATACTAGCTG
TACACATGTAACCCGCTGGGTTGCGGAGGAATCAAACAGTCGTCAATCGG
TTAGCGATGTAACCTGTGCATCGGAGTCGATTGTTGAATTGTTGGCTTGG
GCCAGCTGGACCGTTGCACAAGAATGCATTGCCTGTAGGCGTCTCGATCA
AAGTACACGCACCACTGAAATTCGAATCGCGAAAACAATCGATAGGCTAC
TACCGTATACGACACAAGATAAGCCACCCCCCGTTGATACATTTGGTTGG
GCGCTTAAAAATATTGTCACCGGGTCGCTAATCTTGTGGGGGGTGGCTTA
TCTTTTGTGTACCCGGGTGATAGGGTACTGGTACAAAGCGGGCTCCATAG
GGGGTGTGATTACCATGGGGGTGTGACTGGAACCCAGGCACGCATTATTG
TTCTTGTCGCTCCTCTTTCCCCCCAGCAGTGTAGACCTCTCAGCCCTGAT
TTGTGAACGGCGCCAAACCAAACGCATCTTGACTTCCTGTGGGTTATCAC
ATGTCGGCCTCTGGTGGAAACCGAGAAACCGTCTTCCTTTGCAAACTGCT
GCTGCTGTAGTCTGGAATACTAGCTGTACACATGTAACCCGCTGGGTTGC
GGAGGAATCAAACAGTCGTCAATCGGTTAGCGATGTAACCTGTGCATCGG
AGTCGATTGTTGAATTGTTGGCTTGGGCCAGCTGGACCGTTGCACAAGAA
TGCATTGCCTGTAGGCGTCTCGATCAAAGTACACGCACCACTGAAATTCG
AATCGCGAAAACAATCGATAGGCTACTACCGTATACGACACAAGATAAGC
CACCCCCCGTTGATACATTTGGTTGGGCGCTTAAAAATATTGTCACCGGG
TCGCTAATCTTGTGGGGGGTGGCTTATCTTTTGTGTACCCGGGTGATAGG
GTACTGGTACAAAGCGGGCTCCATAGGGGGTGTGATTACCATGGGGGTGT
GA
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