mRNA_S-firma_M_contig933.20293.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A6H5KCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH6_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.450e-18 Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 337 SNDRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
S DR+ L+ FRS GGA W + NW T + LATWYGVE ND+GRV+KL +D NNLRG
Sbjct: 3 STDREALITLFRSAGGARWFRRNNWLTSDGLATWYGVEVNDQGRVVKLRVDANNLRG 59
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.320e-16 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 343 DRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
DRD L+ +R+TGG WS NW TD+DL TW+GV ND+GRV+KLEL NNL G
Sbjct: 5 DRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 9.190e-16 Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 331 KTSNDRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
K S DR L+ F +TGGANW T W TD L WYGVE ND GRV+KL L NNL+G
Sbjct: 8 KMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKG 66
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 2.360e-14 Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 343 DRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
DRD L+ FRSTGGA+W K NW T ++ATW GV+ ND GRV+KL L NNLRG
Sbjct: 5 DRDALVALFRSTGGASWDKKDNWDTAAEIATWSGVQVNDEGRVVKLRLKSNNLRG 59
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 3.110e-14 Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 337 SNDRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
S DRD+L+ + +T GANW N NWGTD DL+ W+GV N +GRV++L+L NNLRG
Sbjct: 3 STDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRG 59
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.070e-13 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 343 DRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
DRD+L+ + +T G NW NKTNW T+ DL+ W+GV+A+D+GRV+KL L N LRG
Sbjct: 5 DRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRG 59
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 2.720e-13 Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 337 SNDRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
S DRD L+ F ST GANW+ NW TD +L TW+GV+ N+RGRV+KL+L +NLRG
Sbjct: 402 STDRDALVALFISTNGANWTCNDNWDTDAELGTWHGVDVNERGRVVKLQLGLHNLRG 458
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A7X8SMX3_9BACT (Uncharacterized protein n=1 Tax=Flammeovirga agarivorans TaxID=2726742 RepID=A0A7X8SMX3_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 3.480e-13 Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 343 DRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
DRDIL++F+ ST G NW+N NWG+D L+ WYGV+ ND GRV+ + + NN+ G
Sbjct: 602 DRDILMLFYESTNGENWTNNENWGSDLPLSEWYGVDTNDEGRVVSIAIYNNNING 656
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.500e-13 Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 343 DRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
DR+ L F+ +T GA W TNWG+ L+ WYGVEAND+GRV+KL L NNLRG
Sbjct: 39 DRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRG 93
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 6.800e-13 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 334 TSNDRDILLVFFRSTGGANWSNKTNWGTDNDLATWYGVEANDRGRVLKLELDENNLRG 507
+S DR L+ FRSTGG W NW TD DL+ W+GVE N GRV++L+L+ NNLRG
Sbjct: 35 SSEDRAALVALFRSTGGTRWILNANWATDADLSKWHGVEVNQHGRVVELDLNNNNLRG 92 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig933.20293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig933.20293.1 >prot_S-firma_M_contig933.20293.1 ID=prot_S-firma_M_contig933.20293.1|Name=mRNA_S-firma_M_contig933.20293.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=169bp EGITTKGTYIDDLQGKLDAHKKEYEDLFAKIEKQLQVHLEERRPEAEKIAback to top mRNA from alignment at S-firma_M_contig933:1121..4356- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig933.20293.1 ID=mRNA_S-firma_M_contig933.20293.1|Name=mRNA_S-firma_M_contig933.20293.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3236bp|location=Sequence derived from alignment at S-firma_M_contig933:1121..4356- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig933:1121..4356- >mRNA_S-firma_M_contig933.20293.1 ID=mRNA_S-firma_M_contig933.20293.1|Name=mRNA_S-firma_M_contig933.20293.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1014bp|location=Sequence derived from alignment at S-firma_M_contig933:1121..4356- (Sphaerotrichia firma Sfir_13m male)back to top |