mRNA_S-firma_M_contig9281.20232.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9281.20232.1
Unique NamemRNA_S-firma_M_contig9281.20232.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 9.440e-33
Identity = 89/203 (43.84%), Postives = 114/203 (56.16%), Query Frame = 1 
Query:  370 ICDTLEEAKTARVLRFTLSSSEEVVADRKSFATLRKEAFTDRLSRNIFTGSVRAGPDYTGYRRIISMSWTG-CSAQNFQVKMLSPSRYGGVDTTVSHPSRETSGGFLIAKVHHIPHDESDVRTNTDIDLPENEDXXXXXXXXXXXDAEVDRPTEGEDRRRLDT----LTMRRVLAREAERGIEAARLEDPDIDAKDSDVELLQ 963
            +CDTLE+AK A+ L F++ + + V+AD  SF T             I+TG+V+   D+ G  R ISM+WT  CS QNF V+M+SP++ GGVDT VS P+      FL+A VHH   DE DV           ED             E     +G  R  LD     LT RR+LA+EAERGIE ARL+DPDIDAKD+D+  LQ
Sbjct:    1 MCDTLEDAKEAKALEFSIGAGQTVIADLVSFTT-------------IWTGTVKESEDFDGLPRSISMTWTADCSTQNFVVQMISPAKDGGVDTMVSLPNPSNGENFLLATVHHNSIDEIDV-----------EDDIGRRLQIADSVGEQTNLRQGVQRSALDDGSEILTPRRLLAKEAERGIERARLDDPDIDAKDNDIRQLQ 179
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BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-18
Identity = 65/137 (47.45%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:  568 MSWTG-CSAQNFQVKMLSPSRYGGVDTTVSHPSRETSGGFLIAKVHHIPHDESDVRTNTDIDLPENEDXXXXXXXXXXXDAEVDRPTEGEDRRRLDT----LTMRRVLAREAERGIEAARLEDPDIDAKDSDVELLQ 963
            M+WT  CS QNF V+M+SP++ GGVDT VS P+      FL+A +H+   DE DV           ED             E     EG  R  LD     LT RR+LA+EAERGIE ARLEDPDIDAKD D+ LLQ
Sbjct:    1 MTWTADCSTQNFVVQMISPAKDGGVDTVVSLPNPSNGENFLLATIHYNSIDEIDV-----------EDDIGRRLQIADSVGEQTNLREGAQRYALDDGLEILTPRRLLAKEAERGIERARLEDPDIDAKDCDIRLLQ 126
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BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.240e-10
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = 1 
Query:  271 IHEDGVDSEGEAWRKAMNTDGLLNAT-KVERGELICDTLEEAKTARVLRFTLSSSEEVVADRKSFATLRKEAFTDRLSRNIFTGSV-RAGPDYTGYRRIISMSWTG-CSAQNFQVKMLSPSRYGGVDTTVSHP-SRETSGGFLIAKVHHIPHDESD 726
            I ED    E E   + + TD L      +E G+L+CD+LE+A  + +LRFT+SS+E V+A+R S++++      D  +R  + G V    P      R +SM+WT  C  + F +K++S +  G      S P S  +S    + ++    +DESD
Sbjct:  144 IPEDEHQVE-EGLVEVLETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDPEPSTNSIPRTVSMTWTDPCDIETFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVELQKFFYDESD 298
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BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-7
Identity = 43/147 (29.25%), Postives = 76/147 (51.70%), Query Frame = 1 
Query:  229 DATGLPVGFIYNRFIHEDGVDSEGEAWRKAMNTDGLLNAT-KVERGELICDTLEEAKTARVLRFTLSSSEEVVADRKSFATLRKEAFTDRLSRNIFTGSV-RAGPDYTGYRRIISMSWTG-CSAQNFQVKMLSPSRYGGVDTTVSHP 660
            D + + VG ++     E+ ++ E  A   A+ +D        +  GEL+CD+LE+A  + +LRF +SS+E V+A+R S++++    F D  +R  + G V    P      R +SM+WT  C  ++F + ++S +  G      S P
Sbjct:   44 DVSDVGVGEVHPIASDEEEIEQELVA---ALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEPPAGSAPRTVSMTWTNPCGVESFLLTVVSHNNDGSTSIVRSIP 187
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BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 8.320e-5
Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  334 LLNATKVERGELICDTLEEAKTARVLRFTLSSSEEVVADRKSFATLRKEAFTDRLSRNIF 513
            LL    +E GEL+CD+LE+A  + +LRFT+SS+E V+A+R S++++     +D ++R  F
Sbjct:    7 LLFVGDIELGELLCDSLEDAADSSLLRFTISSTETVIAERTSYSSIDGSVLSDGITRMSF 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9281.20232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC56_ECTSI9.440e-3343.84Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A6H5JDN0_9PHAE1.030e-1847.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE6.240e-1032.05LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LLU0_ECTSI1.240e-729.25PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FTV1_ECTSI8.320e-541.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9281contigS-firma_M_contig9281:447..3123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D8LC56
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons6
Model size966
Cds size963
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9281.20232.1prot_S-firma_M_contig9281.20232.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9281 448..3123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828756.3161724-CDS-S-firma_M_contig9281:447..7141622828756.3161724-CDS-S-firma_M_contig9281:447..714Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 448..714 -
1697105143.6815155-CDS-S-firma_M_contig9281:447..7141697105143.6815155-CDS-S-firma_M_contig9281:447..714Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 448..714 -
1622828756.3285656-CDS-S-firma_M_contig9281:1251..13531622828756.3285656-CDS-S-firma_M_contig9281:1251..1353Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1252..1353 -
1697105143.6934357-CDS-S-firma_M_contig9281:1251..13531697105143.6934357-CDS-S-firma_M_contig9281:1251..1353Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1252..1353 -
1622828756.343232-CDS-S-firma_M_contig9281:1580..16671622828756.343232-CDS-S-firma_M_contig9281:1580..1667Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1581..1667 -
1697105143.7030568-CDS-S-firma_M_contig9281:1580..16671697105143.7030568-CDS-S-firma_M_contig9281:1580..1667Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1581..1667 -
1622828756.3609252-CDS-S-firma_M_contig9281:1975..20471622828756.3609252-CDS-S-firma_M_contig9281:1975..2047Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1976..2047 -
1697105143.7129683-CDS-S-firma_M_contig9281:1975..20471697105143.7129683-CDS-S-firma_M_contig9281:1975..2047Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 1976..2047 -
1622828756.375251-CDS-S-firma_M_contig9281:2298..23901622828756.375251-CDS-S-firma_M_contig9281:2298..2390Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 2299..2390 -
1697105143.723391-CDS-S-firma_M_contig9281:2298..23901697105143.723391-CDS-S-firma_M_contig9281:2298..2390Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 2299..2390 -
1622828756.3870325-CDS-S-firma_M_contig9281:2780..31231622828756.3870325-CDS-S-firma_M_contig9281:2780..3123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 2781..3123 -
1697105143.7337723-CDS-S-firma_M_contig9281:2780..31231697105143.7337723-CDS-S-firma_M_contig9281:2780..3123Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9281 2781..3123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9281.20232.1

>prot_S-firma_M_contig9281.20232.1 ID=prot_S-firma_M_contig9281.20232.1|Name=mRNA_S-firma_M_contig9281.20232.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=321bp
RAGFLLWLTLFLSPCRCPSSGCVMRRFVATVLCGLAAAASVSCADGQSLS
ATAGSKVIATSAKNDSDIALTGPDRWDATGLPVGFIYNRFIHEDGVDSEG
EAWRKAMNTDGLLNATKVERGELICDTLEEAKTARVLRFTLSSSEEVVAD
RKSFATLRKEAFTDRLSRNIFTGSVRAGPDYTGYRRIISMSWTGCSAQNF
QVKMLSPSRYGGVDTTVSHPSRETSGGFLIAKVHHIPHDESDVRTNTDID
LPENEDTNVDSPESEDTDAEVDRPTEGEDRRRLDTLTMRRVLAREAERGI
EAARLEDPDIDAKDSDVELLQ
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mRNA from alignment at S-firma_M_contig9281:447..3123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9281.20232.1 ID=mRNA_S-firma_M_contig9281.20232.1|Name=mRNA_S-firma_M_contig9281.20232.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2677bp|location=Sequence derived from alignment at S-firma_M_contig9281:447..3123- (Sphaerotrichia firma Sfir_13m male)
AGAGCAGGTTTTCTCCTCTGGCTCACGCTCTTCCTCTCTCCCTGCCGCTG
TCCGAGCTCAGGGTGCGTAATGCGGCGCTTCGTAGCAACCGTGTTGTGCG
GCTTGGCGGCTGCTGCGTCTGTCTCCTGTGCGGATGGTCAGAGTCTCAGT
GCCACCGCCGGAAGCAAGGTCATCGCCACGAGCGCCAAAAATGACTCCGA
CATAGCTCTTACTGGCCCCGACCGATGGGATGCTACAGGCCTCCCTGTCG
GCTTCATTTACAATCGGTTCATTCACGAAGACGGCGTGGATTCCGAAGGC
GAGGCCTGGAGGAAAGCGATGAATACGGACGGGCTTCTCAATGGTAAGGG
GCCGCATGTTCTGTGAGGAAAGACAGACAGAACTCTATGTATCTGGCCTG
TGGTTTAACCCTGAGGCGAAGTCGGTTAGGCACAAGCTAAATTATGAGGA
CGTGGCTGCATCTCATCTCGAGGAAAATAACGCTGGTTAGCGATCCACAC
TTACTTACTGTAGATTCGCTCATAGCTGCCACGTTGTCCATTTTTTCATT
TTTTCAAAACGCCTGTCTATTGGATGAGAAAATGTGTGCATACAAATCAG
TGGTATTGGTCGCGCACTAAGAATCACGCTCCAGCAGCGTCTATGCACAT
ACGTGTGAACAATATACATGGTGGAAATCGTTTTTTTCTCTGGTAACCTC
CCCACCGCCTCCTTTGCTGCTTGGCATCTCCAGCTACAAAAGTTGAGAGG
GGGGAGCTCATCTGCGACACCCTGGAAGAGGCTAAGACGGCAAGAGTTCT
CCGATTCACTCTCTCCTCCTCCGAGGTGAATTTGCGCTCTTACAATTCTT
CGACCCCATTTTTTAATTATGGAAACAATCGTGCCCGGACGGTATCGGTA
CGTGCAGGTAAGAATCTGACGGCAATAGCTACAAACAAGCAAAGCGCTGC
TGTTAATCTACAACTGTCGCTTCTGCTCGAGGGTAGCGTAAAAGTCCCAT
TGTTCTCAACTCTGAAAACAACGTCATCGCGTACTTACGACCCGACGCCG
ATCTCGACATGATTCTGTTCCTGCAGGAAGTGGTTGCCGATCGCAAATCT
TTCGCCACCTTGAGGAAGGAAGCTTTTACTGATCGCCTATCTCGGAACGT
GAGCCACTATCTAGAGAGAGAAGCAGACAAAACGGGGCTGGGGCACAGAC
GGGTAGAGCGTGGCTCTGCACTTTGCTACCGTTCTCTGTTGTTACTGTGG
TATCGTATGTACGATGAAGTTATCGAACACTCTCCCCCTGATACCAACTA
GGTCGCAGGACCGTGACCAACCCTTAGACATGAAGACGGATCACACCTTG
AGCGGCTCTGGCAGCGGAGTAAAACGATCAAAAAAGAAAACAACAATAGA
CATCAAAAGTTCATTCGACGTTGCTGCGCACTCGACGGGCGAAACGCCAC
GCACAGATCTTTACTGGATCCGTGAGGGCAGGACCAGACTACACCGGGTA
TCGCCGGATTATCTCCATGTCGTGGACCGGATGCAGCGCCCAGGTGAAAG
GGGGCACTTACTCACTTGGCCGTTGTCTCTAGGTATGGTGACTGCCGGAC
GCTGTCTCTTCTTGTTGGTCGTGCGCGAGAATTCGCAGCAGGTGATGTCA
TCCACACGACATGGCTGACTGTGCTAGGCCTACGGAATGTGAGTGCGCAG
CTTTCTGGCACTCACTCAGATACATCTACGGCACCCGCCTCACCGATTTC
GTGCATCACCGTTATCGCAGAATTTCCAAGTCAAGATGCTCTCTCCGTCC
AGATACGGGGGTGTAGACACGACCGTGTCTCACCCTTCTCGCGAAACTTC
TGGCGGGTTCCTGATCGCAAAAGTGAGTGCAGAGAACTATAATAGCGAAT
AATGCTAACGAAGTCGCCACGGTCCGCTAAATTTAGCGCCAAGATGCCAA
ACACCTCTTCGTGGCGAACATACAGACACGGAGGAACCACAACAAGCATC
AACCACCCTTAGATGGCAAAAACGTCTCGGACTAATGCCACACAAAGCGT
GGAACGCTTGTGGAACGCATGCGGTGTGTACGGAGTCACAGTTGCCACAG
GCCGCCGCAAGCTCGGGCTCTGGGCGGCCGGAGGACAATGCACGCTGTCG
CCGCCCGCGCCCGCCCCATCTATGTACATACGACCGCGAGATGCGCTCGG
GGCAATACCTCTTGGTATCTGTCACGTCGTCGTAGAACGGGCCGCCGCCG
TTTTTCAAAGTTCAGGCTCTGCACGTGCTTGCTTAATTAACCTTTGCCCG
ATGGGGGCATGCTCAGAGGCTAACCTTTCAGACCGCTGCATCACATCCGG
CTGCTGCCACCGCAACAGGGCGCTAATTACGCTTGCTTTCGATCGTCCAA
AACCTTAAGGTACACCACATACCACACGACGAGAGCGACGTTCGCACCAA
CACAGACATCGACCTCCCCGAGAACGAAGACACCAACGTCGACTCCCCCG
AGAGCGAAGACACCGACGCCGAAGTCGACCGCCCCACCGAGGGTGAAGAC
AGGCGAAGACTTGACACCCTCACGATGAGAAGAGTCCTCGCTCGGGAGGC
CGAAAGGGGGATCGAGGCTGCCAGGCTGGAAGACCCGGACATAGACGCCA
AGGACAGCGATGTCGAACTTCTTCAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9281:447..3123-

>mRNA_S-firma_M_contig9281.20232.1 ID=mRNA_S-firma_M_contig9281.20232.1|Name=mRNA_S-firma_M_contig9281.20232.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1926bp|location=Sequence derived from alignment at S-firma_M_contig9281:447..3123- (Sphaerotrichia firma Sfir_13m male)
AGAGCAGGTTTTCTCCTCTGGCTCACGCTCTTCCTCTCTCCCTGCCGCTG
TCCGAGCTCAGGGTGCGTAATGCGGCGCTTCGTAGCAACCGTGTTGTGCG
GCTTGGCGGCTGCTGCGTCTGTCTCCTGTGCGGATGGTCAGAGTCTCAGT
GCCACCGCCGGAAGCAAGGTCATCGCCACGAGCGCCAAAAATGACTCCGA
CATAGCTCTTACTGGCCCCGACCGATGGGATGCTACAGGCCTCCCTGTCG
GCTTCATTTACAATCGGTTCATTCACGAAGACGGCGTGGATTCCGAAGGC
GAGGCCTGGAGGAAAGCGATGAATACGGACGGGCTTCTCAATGAGAGCAG
GTTTTCTCCTCTGGCTCACGCTCTTCCTCTCTCCCTGCCGCTGTCCGAGC
TCAGGGTGCGTAATGCGGCGCTTCGTAGCAACCGTGTTGTGCGGCTTGGC
GGCTGCTGCGTCTGTCTCCTGTGCGGATGGTCAGAGTCTCAGTGCCACCG
CCGGAAGCAAGGTCATCGCCACGAGCGCCAAAAATGACTCCGACATAGCT
CTTACTGGCCCCGACCGATGGGATGCTACAGGCCTCCCTGTCGGCTTCAT
TTACAATCGGTTCATTCACGAAGACGGCGTGGATTCCGAAGGCGAGGCCT
GGAGGAAAGCGATGAATACGGACGGGCTTCTCAATGCTACAAAAGTTGAG
AGGGGGGAGCTCATCTGCGACACCCTGGAAGAGGCTAAGACGGCAAGAGT
TCTCCGATTCACTCTCTCCTCCTCCGAGCTACAAAAGTTGAGAGGGGGGA
GCTCATCTGCGACACCCTGGAAGAGGCTAAGACGGCAAGAGTTCTCCGAT
TCACTCTCTCCTCCTCCGAGGAAGTGGTTGCCGATCGCAAATCTTTCGCC
ACCTTGAGGAAGGAAGCTTTTACTGATCGCCTATCTCGGAACGAAGTGGT
TGCCGATCGCAAATCTTTCGCCACCTTGAGGAAGGAAGCTTTTACTGATC
GCCTATCTCGGAACATCTTTACTGGATCCGTGAGGGCAGGACCAGACTAC
ACCGGGTATCGCCGGATTATCTCCATGTCGTGGACCGGATGCAGCGCCCA
GATCTTTACTGGATCCGTGAGGGCAGGACCAGACTACACCGGGTATCGCC
GGATTATCTCCATGTCGTGGACCGGATGCAGCGCCCAGAATTTCCAAGTC
AAGATGCTCTCTCCGTCCAGATACGGGGGTGTAGACACGACCGTGTCTCA
CCCTTCTCGCGAAACTTCTGGCGGGTTCCTGATCGCAAAAAATTTCCAAG
TCAAGATGCTCTCTCCGTCCAGATACGGGGGTGTAGACACGACCGTGTCT
CACCCTTCTCGCGAAACTTCTGGCGGGTTCCTGATCGCAAAAGTACACCA
CATACCACACGACGAGAGCGACGTTCGCACCAACACAGACATCGACCTCC
CCGAGAACGAAGACACCAACGTCGACTCCCCCGAGAGCGAAGACACCGAC
GCCGAAGTCGACCGCCCCACCGAGGGTGAAGACAGGCGAAGACTTGACAC
CCTCACGATGAGAAGAGTCCTCGCTCGGGAGGCCGAAAGGGGGATCGAGG
CTGCCAGGCTGGAAGACCCGGACATAGACGCCAAGGACAGCGATGTCGAA
CTTCTTCAGGTACACCACATACCACACGACGAGAGCGACGTTCGCACCAA
CACAGACATCGACCTCCCCGAGAACGAAGACACCAACGTCGACTCCCCCG
AGAGCGAAGACACCGACGCCGAAGTCGACCGCCCCACCGAGGGTGAAGAC
AGGCGAAGACTTGACACCCTCACGATGAGAAGAGTCCTCGCTCGGGAGGC
CGAAAGGGGGATCGAGGCTGCCAGGCTGGAAGACCCGGACATAGACGCCA
AGGACAGCGATGTCGAACTTCTTCAG
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