mRNA_S-firma_M_contig9280.20231.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9280.20231.1
Unique NamemRNA_S-firma_M_contig9280.20231.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: D7FUE2_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE2_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.780e-46
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQLQS 249
            MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQ  S
Sbjct:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQAPS 83
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.390e-32
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQ 240
            MP IEVGTVGGGTSLPAQAACLDV+GCRGA+QAP  PG NA+Q+A+V+A A LAGELSL+AALASNQLVRAHMQHNRK Q
Sbjct:  485 MPCIEVGTVGGGTSLPAQAACLDVIGCRGASQAPDAPGANARQLAQVIAAAVLAGELSLMAALASNQLVRAHMQHNRKKQ 564
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S2FDH1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDH1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.620e-29
Identity = 61/88 (69.32%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQLQSQPAAA 264
            MPSIEVGTVGGGTSLPAQA CLD++G RGA++AP  PG+NAQ++ ++VA A +AGELSL++ALA+N+LV+AHMQHNRKPQ    PAA+
Sbjct:  370 MPSIEVGTVGGGTSLPAQAQCLDIMGVRGASRAPKNPGDNAQKLGRMVAAAVMAGELSLLSALAANELVKAHMQHNRKPQ----PAAS 453
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S0ST55_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST55_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.390e-28
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAP-GRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGT LPAQAACLD++  RGA++ P  +PG+NA+++A+V+  A LAGELSL+AALA+N LVR+HMQHNRKP
Sbjct:   87 MPSIEVGTVGGGTHLPAQAACLDILDVRGASKGPHSQPGDNARKLAQVIGAAVLAGELSLIAALAANHLVRSHMQHNRKP 166
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A1E7FDJ4_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDJ4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.460e-28
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGTSLPAQAACL+ +GCRG    PG   +NA+++A VVA ATLAGELSL+AALA+N LV+AHM HNRKP
Sbjct:  141 MPSIEVGTVGGGTSLPAQAACLEAIGCRGGASTPG---DNARKLATVVAAATLAGELSLLAALAANTLVQAHMVHNRKP 216
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S1CUP3_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUP3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.550e-27
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGT LPAQAACL  +G +G  +    PG+NA+Q+A VVA AT+AGELSL+AALASN LV AHM HNRKP
Sbjct:   23 MPSIEVGTVGGGTGLPAQAACLKAIGVKGGGE---NPGDNAKQLAHVVAAATMAGELSLMAALASNSLVAAHMTHNRKP 98
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A812U1Q8_SYMMI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U1Q8_SYMMI)

HSP 1 Score: 105 bits (261), Expect = 1.820e-26
Identity = 55/86 (63.95%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQLQSQPA 258
            MPSIEVGTVGGGT LPAQ+ CLD+ G RGA++     G+NA+Q+A++V  + LAGELSL+AALA+N LVR+HMQHNRKP   ++PA
Sbjct:   87 MPSIEVGTVGGGTHLPAQSGCLDICGVRGASRVAA--GDNARQLAQIVGASVLAGELSLMAALAANHLVRSHMQHNRKPAAPAEPA 170
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.460e-26
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRK 234
            MPS+EVGTVGGGTSLPAQ ACL+V+   GA++AP  PG NAQ ++K +AGA LAGE+SL+AALASNQLVRAHM HNRK
Sbjct:  366 MPSLEVGTVGGGTSLPAQRACLEVMNVAGASRAPKAPGTNAQALSKAIAGAVLAGEMSLMAALASNQLVRAHMIHNRK 443
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.980e-25
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGTSLPAQAACL+ +GC+G    PG    NAQ++A VVA AT+AGELSL+AALA+N LV+AHM HNRKP
Sbjct:  555 MPSIEVGTVGGGTSLPAQAACLEAIGCKGGGSTPGA---NAQKLATVVAAATMAGELSLLAALAANTLVQAHMVHNRKP 630
[Close]
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Match: A0A7S3GVF0_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVF0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 9.250e-25
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPG-RPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQLQSQPAA 261
            MPSIEVGTVGGGT LPAQA CL++ G RGA + PG +PG+NA+++A++V  A LA ELSL+AALA+N LV +HMQHNRKP     PA+
Sbjct:  519 MPSIEVGTVGGGTHLPAQAGCLEICGVRGAAKGPGAQPGDNARKLAQIVGAAVLAAELSLMAALAANHLVNSHMQHNRKPAEAPAPAS 606
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9280.20231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE2_ECTSI1.780e-4697.59Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A835YX65_9STRA1.390e-3282.503-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2FDH1_9STRA1.620e-2969.323-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S0ST55_9STRA3.390e-2870.00Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A1E7FDJ4_9STRA8.460e-2873.42Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S1CUP3_9STRA4.550e-2770.89Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A812U1Q8_SYMMI1.820e-2663.95Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S1Y0Q7_9STRA2.460e-2673.083-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S4ALR6_9STRA4.980e-2572.153-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S3GVF0_9STRA9.250e-2563.643-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9280contigS-firma_M_contig9280:165..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue5.9e-21
Seed eggNOG ortholog159749.K0T6D9
Preferred nameHMG1
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004420,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006696,GO:0006720,GO:0006721,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0010142,GO:0012505,GO:0016020,GO:0016021,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0019287,GO:0019637,GO:0019693,GO:0031090,GO:0031224,GO:0031903,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0033865,GO:0033875,GO:0034032,GO:0034399,GO:0034641,GO:0035383,GO:0042175,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0046165,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902652,GO:1902653,GO:1902767,GO:1905368,GO:1905369
EggNOG free text desc.Hydroxymethylglutaryl-coenzyme A reductase
EggNOG OGs2XANU@2836,COG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
BiGG ReactioniMM904.YML075C,iND750.YML075C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHydroxymethylglutaryl-CoA reductase (NADPH)
Ec32 orthologEc-03_000570.1
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828756.2577586-CDS-S-firma_M_contig9280:164..3011622828756.2577586-CDS-S-firma_M_contig9280:164..301Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9280 165..301 +
1697105143.6362717-CDS-S-firma_M_contig9280:164..3011697105143.6362717-CDS-S-firma_M_contig9280:164..301Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9280 165..301 +
1622828756.273989-CDS-S-firma_M_contig9280:876..10151622828756.273989-CDS-S-firma_M_contig9280:876..1015Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9280 877..1015 +
1697105143.661406-CDS-S-firma_M_contig9280:876..10151697105143.661406-CDS-S-firma_M_contig9280:876..1015Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9280 877..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9280.20231.1prot_S-firma_M_contig9280.20231.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9280 165..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9280.20231.1

>prot_S-firma_M_contig9280.20231.1 ID=prot_S-firma_M_contig9280.20231.1|Name=mRNA_S-firma_M_contig9280.20231.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=92bp
MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAG
ATLAGELSLVAALASNQLVRAHMQHNRKPQLQSQPAAATST*
back to top

mRNA from alignment at S-firma_M_contig9280:165..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9280.20231.1 ID=mRNA_S-firma_M_contig9280.20231.1|Name=mRNA_S-firma_M_contig9280.20231.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=851bp|location=Sequence derived from alignment at S-firma_M_contig9280:165..1015+ (Sphaerotrichia firma Sfir_13m male)
ATGCCGTCGATCGAGGTGGGCACCGTCGGCGGAGGCACGAGCCTCCCCGC
GCAGGCGGCGTGTCTGGATGTTGTCGGCTGCCGAGGGGCGACCCAGGCGC
CTGGCCGGCCGGGGGAGAACGCCCAGCAGATGGCCAAGTAAGTGTATCAA
TAGTAGTGTCGTTTTTTGTCCTATTTTCGTCCTTGCTTTGCCCTTCTTTT
TGTCCCTTTTTTGTCCTTTTTTGTGGCGCGGTCGTGGCGTCCGCTGTGGA
CGTGACTGCCTGCTCCTGCTCCTCGACCCCGTAACCCATCCCCCCTTCTC
GCTCTGAGCGCGGTCTGCTATTACAGTACATGGACTGATTTATCCTGCTG
CCACATTGTTCGATCAATCGTTTTCTATCATAAATTTACACGCCGAGAAG
CTTATTGTTCTCGCACTTTTACGTTTTCTCGCACTTGTAATACGGATAGA
AGACTTTTTGCTCGCAAATGTGTAAAAACAATTTATCTCGCACACCACAC
CTAAATCTCGCACGTGTATTGCATTGCGAGCCGTTTTTTTCTCACGCTTG
GTGTCCTCTTTCTCACCTTCGCGCTTCTTCGTCTGTTGTCCTTCCCTTCC
CTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCGCGCCA
TGTTCATGTTATGTGTTTCTTGTTGGTATTGCTATTGCTGTTGGCCTTGC
TTTATGCTTTAGGGTCGTTGCTGGCGCCACCCTGGCGGGAGAGCTTTCCC
TGGTGGCGGCCTTGGCGTCCAACCAGCTCGTGCGCGCCCACATGCAGCAC
AACCGCAAGCCGCAGCTGCAGTCGCAGCCTGCGGCGGCGACCTCGACATG
A
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9280:165..1015+

>mRNA_S-firma_M_contig9280.20231.1 ID=mRNA_S-firma_M_contig9280.20231.1|Name=mRNA_S-firma_M_contig9280.20231.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=552bp|location=Sequence derived from alignment at S-firma_M_contig9280:165..1015+ (Sphaerotrichia firma Sfir_13m male)
ATGCCGTCGATCGAGGTGGGCACCGTCGGCGGAGGCACGAGCCTCCCCGC
GCAGGCGGCGTGTCTGGATGTTGTCGGCTGCCGAGGGGCGACCCAGGCGC
CTGGCCGGCCGGGGGAGAACGCCCAGCAGATGGCCAAATGCCGTCGATCG
AGGTGGGCACCGTCGGCGGAGGCACGAGCCTCCCCGCGCAGGCGGCGTGT
CTGGATGTTGTCGGCTGCCGAGGGGCGACCCAGGCGCCTGGCCGGCCGGG
GGAGAACGCCCAGCAGATGGCCAAGGTCGTTGCTGGCGCCACCCTGGCGG
GAGAGCTTTCCCTGGTGGCGGCCTTGGCGTCCAACCAGCTCGTGCGCGCC
CACATGCAGCACAACCGCAAGCCGCAGCTGCAGTCGCAGCCTGCGGCGGC
GACCTCGACATGAGGTCGTTGCTGGCGCCACCCTGGCGGGAGAGCTTTCC
CTGGTGGCGGCCTTGGCGTCCAACCAGCTCGTGCGCGCCCACATGCAGCA
CAACCGCAAGCCGCAGCTGCAGTCGCAGCCTGCGGCGGCGACCTCGACAT
GA
back to top