mRNA_S-firma_M_contig9276.20223.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9276.20223.1
Unique NamemRNA_S-firma_M_contig9276.20223.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 734 bits (1895), Expect = 1.930e-258
Identity = 373/507 (73.57%), Postives = 413/507 (81.46%), Query Frame = 1 
Query:    1 FVRGGMLSKTADTPQRAGSLGLKGASQKTVHPCTLCKVTQSSVADDVGGELGDRHYDFVRNRRKRVEIEDGWRRLSELGFGTPEAVELSKKLGIVEPHPAMLGQPRALWELTTMHSPMMCVGPELLHLNNLNHLGQSQTFLLDLLSPAGREHVAGIFRQGRALFGAGVSPLKNPVKDYPGYTGAQKALFGSVQLFVVRGLLSSTATMKHYLNSTAINKYNTEVWGGLSDEGALDRLREYFQASSSLSFAANGQEFTDSDLRQLHTRACDYIENAKLTLGRPGVRMSNHMWLHFADCIKAHGRPQNADVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYPGSAAWRATILPQDAGASNVSAGSAGTGA---------------RESWEACLSEGAVRPSADSILRANDRWYACGRSAGDSRGVCSELRCSSCWEGG 1476
            F RGGM+SKTADTP+R GSLG KG SQ+T HPC+LCKV Q++ ADDVGG+LG+R YD V+NRR R E E G  +L E+GFGT EAV+LSK+LGIVEPHP ++G PRALW+LT+MHSPM+CVG ELLHLNNLNHLGQSQTFLLDLLSPAGREHVAGIFRQGR L GAGVSPLKNPVKDYPGYTGAQKALFGSVQL V+RGLL STA MKHYLNSTA+ KYN E+WG +S E   DR+ EYFQASSSLSFAANGQEFTD DL QLHTRA DY+ENAKLTLGR GVR SNHMWLHFAD IKAHG  QNADVSEGGHQ HK+ NK+GSSRDPPAHHAR+TNT LAL RLAT E YTA+RYSY +   +T+ VTSGPGCQRVLQA+   L G + +V DGTEGT PTAAM  G   GSA WRATIL QDA  ++V AGSAG+G                RE+WEACLS+GAVRPSA +IL AN  WYACGRS GD R VC ELRCSSCWEGG
Sbjct:    6 FARGGMVSKTADTPERQGSLGFKGVSQRTSHPCSLCKVKQTADADDVGGQLGERDYDVVKNRRTRRECEHGRSKLLEMGFGTGEAVKLSKELGIVEPHPTLVGHPRALWDLTSMHSPMVCVGSELLHLNNLNHLGQSQTFLLDLLSPAGREHVAGIFRQGRTLLGAGVSPLKNPVKDYPGYTGAQKALFGSVQLIVLRGLLLSTAMMKHYLNSTALKKYNGEIWGHVSPEEVRDRVLEYFQASSSLSFAANGQEFTDFDLLQLHTRAGDYVENAKLTLGRAGVRTSNHMWLHFADSIKAHGHHQNADVSEGGHQHHKKHNKSGSSRDPPAHHARNTNTKLALMRLATSETYTATRYSYSKKTMITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPNDVRAGSAGSGVAPXXXXXXXXXXGGPREAWEACLSKGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGG 512
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 557 bits (1435), Expect = 6.160e-186
Identity = 285/472 (60.38%), Postives = 342/472 (72.46%), Query Frame = 1 
Query:   64 LKGASQKTVHPCTLCKVTQSSVADDVGGELGDRHYDFVRNRRKRVEIEDGWRRLSELGFGTPEAVELSKKLGIVEPHPAMLGQPRALWELTTMHSPMMCVGPELLHLNNLNHLGQSQTFLLDLLSPAGREHVAGIFRQGRALFGAGVSPLKNPVKDYPGYTGAQKALFGSVQLFVVRGLLSSTATMKHYLNSTAINKYNTEVWGGLSDEGALDRLREYFQASSSLSFAANGQEFTDSDLRQLHTRACDYIENAKLTLGRPGVRMSNHMWLHFADCIKAHGRPQNADVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYPGSAAWRATILPQ-DAGASNVSAGSAGTGARESWEACLSEGAVRPSADSILRANDRWYACGRSAGDSRGVCSELRCSSCWEGG 1476
            +   + KT  PC  C V QS+V  + GG+LGDR++D V+ RRKR E+E G   L +LGFGTP+AV LSKKLGIVEPHP+M  QPR LW+LT+ HSPM+  GPELLHL+ LNHLG  QTF L LLSPAGR HV G+ RQ   L+G G  PLK+P+KDY GYTG+ K LFGSVQL V RGLL+S   M+HYL+S A+   N EVWG L+DEG LDRLR+Y QASS+L+FAA GQ F+DSDL +LH RA D +EN+KLTLGR GV+ + H WLH A+ I+AHGRPQ+A+V E GHQ HKRS K+ S+RDP AHHAR TNT LAL RL + EPYTA+RYSY    KVT+QVTSGPGC+R+L A+  RLRG L  V D    T PTA+M  G Y GSA W+ATIL   D   S    GS   GA+E WE C+SEG VRP A +ILRAN  W++CGRS G +   C++ RC  CWEGG
Sbjct:  305 MSNPTSKTEVPCGNCAVRQSNVEGETGGDLGDRNFDIVKYRRKRGEVELGRSELEKLGFGTPQAVALSKKLGIVEPHPSMRVQPRLLWDLTSHHSPMVSEGPELLHLDFLNHLGGVQTFFLGLLSPAGRAHVTGVVRQRGGLYGPGALPLKDPIKDYTGYTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALRAQNIEVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAHGRPQDANVGEAGHQTHKRSRKSSSNRDPAAHHARRTNTFLALHRLTSPEPYTANRYSYSSKTKVTEQVTSGPGCRRILAALGDRLRGGLNGVVDADASTTPTASMKDGKYQGSAKWQATILGGGDLACSEDGGGSVAAGAKEPWEVCVSEGPVRPHAGAILRANAEWFSCGRSDG-ALDDCADARCPLCWEGG 775
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 5.650e-95
Identity = 192/387 (49.61%), Postives = 213/387 (55.04%), Query Frame = 1 
Query:  622 KHYLNSTAINKYNTEVWGGLSDEGALDRLREYFQASSSLSFAANGQEFTDSDLRQLHTRACDYIENAKLTLGRPGVRMSNHMWLHFADCIKAHGRP------QNA----------------DVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYP-------------------------------------------------------------------------------GSAAWRATILPQDAGASNVSAGSAGTGA-RESWEACLSEGAVRPSADSILRANDRWYACGRSAGDSRGVCSELRCSSCWEGG 1476
            K+YLNSTA+ KYN E+ G +S E   DR+ EYFQ SSSLSFAANGQEFTD DL +LHTRA DY     LTLGR GVR SNHMWLHFAD IKAHG P      +NA                   EGGHQ HK+ NK+GSSRDPPAHHARSTNT L L +LAT E YTA+RYSY +  K+T+ VTSGPGCQRVLQA+   L G + +V DGTEGT PTAAM  G  P                                                                               G     AT L   A  ++V  GS G G  RE+WEACLSEGAVRPSA +IL AN  WYACGRS GD R VC ELRCSSCWEGG
Sbjct:   40 KNYLNSTALKKYNEEIRGDVSPEEVRDRVLEYFQPSSSLSFAANGQEFTDLDLDELHTRAGDY-----LTLGRAGVRTSNHMWLHFADSIKAHGTPSCLCCPKNAATPPSSALPHQGALRMQTHEGGHQHHKKHNKSGSSRDPPAHHARSTNTKLPLMKLATTETYTATRYSYSKKTKITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGXDPPAHHARSTNTKLPLMKLATTETYTATRYSYSKKTKITETLTSGPGCQRVLQALDDSRSGGITNVVDGTEGTKPTAAMLAGQPHGSATSLRGGAAPNDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGRDVCKELRCSSCWEGG 421
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5KMA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA2_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 3.690e-76
Identity = 135/190 (71.05%), Postives = 147/190 (77.37%), Query Frame = 1 
Query:  865 MWLHFADCIKAHGRPQNADVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYPGSAAWRATILPQDAGASNVSAGSAGTGA-RESWEACLSEGAVRPSADSILRANDRWYACGRSAGDSR 1431
            MWLHFAD IK HGRPQNADVSEGGHQ HK+ NK+GSSRDPPAHHARSTN  LAL RLAT E YTA+RYSY +  K+T+ VTSGPGCQRVLQA+   L G + +V DGTEGT PTAAM  G   GSA WRATIL QDA   +V  GS G G  RE+WEACLSEGAVRPSA +IL AN  WYACGRS GD R
Sbjct:    1 MWLHFADSIKPHGRPQNADVSEGGHQHHKKHNKSGSSRDPPAHHARSTNAKLALMRLATTETYTATRYSYSKKTKITETVTSGPGCQRVLQALDDSLSGGITNVVDGTEGTKPTAAMLAGQPHGSATWRATILRQDAAPDDVGTGSTGGGGPREAWEACLSEGAVRPSAGAILNANTLWYACGRSDGDGR 190
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5K8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.570e-47
Identity = 99/179 (55.31%), Postives = 119/179 (66.48%), Query Frame = 1 
Query:  946 HKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYPGSAAWRATILPQDAGASNVS-AGSAGTGARESWEACLSEG-AVRPSADSILRANDRWYACGRSAGDSRGVCSELRCSSCWEGG 1476
            HK  +K+ SSRDPPA+HAR  NT LALARL T EP+TA+RYSY    KVT+ VTSG GCQRVL+AV S L+  +AHV D T G +PTAA S   + GSA W +++LP +    N S  GSAG G +E WEAC++    +RP  + IL A   WY CG   GD   VCSELRC  CWEGG
Sbjct:    2 HKSGSKSDSSRDPPAYHARRANTFLALARLTTPEPHTATRYSYATKSKVTKTVTSGSGCQRVLKAVGSMLQVGMAHVEDATVGVVPTAAASTAQHQGSARWESSVLPDEPLVPNHSHLGSAGKGPKEPWEACMAGADGIRPRKERILAAARIWYGCGSGKGDLSAVCSELRCPCCWEGG 180
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5JN94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN94_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.450e-36
Identity = 91/176 (51.70%), Postives = 103/176 (58.52%), Query Frame = 1 
Query:  922 VSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASRYSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAMSKGAYPGSAAWRATILPQDAGASNVSAGSAGTGARESWEACLSEGAVRPSADSILRANDRWYACGRSAGDSRGVCSEL 1449
            VSEGGH+ H++ N +GSSRDP AHHARST T LAL RLAT E  TA+RY Y +  K+T  VTSG GCQRVLQA+   L G +  + DGTEGT PTAAM                                   E+WEACLSEGAVRPSA  IL AN   YA G S GD R V +EL
Sbjct:    9 VSEGGHEHHEKRNTSGSSRDPLAHHARSTYTKLALMRLATSETSTATRYFYFKNTKITDTVTSGLGCQRVLQALDDSLSGGMMKIVDGTEGTKPTAAM-----------------------------------EAWEACLSEGAVRPSAGGILNANTLRYANGHSDGDGRDVWNEL 149
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BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5K7L1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L1_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.680e-33
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 FVRGGMLSKTADTPQRAGSLGLKGASQKTVHPCTLCKVTQSSVADDVGGELGDRHYDFVRNRRKRVEIEDGWRRLSELGFGTPEAVELSKKLGIVEPHP 297
            F RGGM+SKT DTP+R GSLG KG SQ+T+HPC+LCKV QS+ ADDVGG+LG+R YD V+NRR R E E G  +L  +GFGT EAV+LSK+LGIVEPHP
Sbjct:  534 FARGGMVSKTGDTPERQGSLGFKGVSQRTLHPCSLCKVRQSADADDVGGQLGERDYDVVKNRRTRRECEHGRSKLLAMGFGTGEAVDLSKELGIVEPHP 632
[Close]
BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5K6P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.800e-33
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:   16 MLSKTADTPQRAGSLGLKGASQKTVHPCTLCKVTQSSVADDVGGELGDRHYDFVRNRRKRVEIEDGWRRLSELGFGTPEAVELSKKLGIVEPHPAMLGQPRALWELTTMHSPMMCVGPELLHLNNL 393
            M S T DTPQ  GS  LK  ++KT  P +LCK  QS+   +VGGE+G R +D V++RR R  +EDG  +L ELG GT EAVELS+ LG+V+P    L QPRAL++L T+HSPM+  GPELLHL++L
Sbjct:    1 MQSMTGDTPQMKGSTCLKSYNRKTECPFSLCKARQSNKEGEVGGEIGRRDFDIVKHRRTRGRVEDGRHQLMELGRGTKEAVELSEALGVVQPDD--LNQPRALFDLVTLHSPMVACGPELLHLDSL 124
[Close]
BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5KFX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.040e-29
Identity = 70/125 (56.00%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:  667 VWGGLSDEGALDRLREYFQASSSLSFAANGQEFTDSDLRQLHTRACDYIENAKLTLGRPGVRMSNHMWLHFADCIKAHGRPQNADVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLAT 1041
            +WG +S E   DR+ EYFQASSSLSFAANGQEFTD DL +LHTRA DY+  A  T                           NA+VSEGG Q HK+ NK+GSSRDPPAHHARSTN  LAL RL T
Sbjct:    1 MWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAF-------------------------NANVSEGGRQHHKKHNKSGSSRDPPAHHARSTNAKLALMRLET 100
[Close]
BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Match: A0A6H5KN48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN48_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.570e-28
Identity = 61/89 (68.54%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  664 EVWGGLSDEGALDRLREYFQASSSLSFAANGQEFTDSDLRQLHTRACDYI---------ENAKLTLGRPGVRMSNHMWLHFADCIKAHG 903
            E WG +S E   DR+ EYFQASSSLSFAANGQEFTD DL +LHTRA DY+         ENAKLTLG  GVR SNHMWLHFAD IK HG
Sbjct:   10 EKWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFVENAKLTLGLAGVRTSNHMWLHFADSIKPHG 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9276.20223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FZ46_ECTSI1.930e-25873.57Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K953_9PHAE6.160e-18660.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM61_9PHAE5.650e-9549.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KMA2_9PHAE3.690e-7671.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8R0_9PHAE3.570e-4755.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN94_9PHAE3.450e-3651.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L1_9PHAE1.680e-3368.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6P3_9PHAE6.800e-3354.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFX1_9PHAE8.040e-2956.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN48_9PHAE6.570e-2868.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9276contigS-firma_M_contig9276:483..4143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_000520.1
Exons5
Model size1599
Cds size1584
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9276.20223.1prot_S-firma_M_contig9276.20223.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9276 498..4143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828755.3529692-UTR-S-firma_M_contig9276:482..4971622828755.3529692-UTR-S-firma_M_contig9276:482..497Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9276 483..497 +
1697105142.9965045-UTR-S-firma_M_contig9276:482..4971697105142.9965045-UTR-S-firma_M_contig9276:482..497Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9276 483..497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828755.3652205-CDS-S-firma_M_contig9276:497..8751622828755.3652205-CDS-S-firma_M_contig9276:497..875Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 498..875 +
1697105143.0061173-CDS-S-firma_M_contig9276:497..8751697105143.0061173-CDS-S-firma_M_contig9276:497..875Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 498..875 +
1622828755.3772798-CDS-S-firma_M_contig9276:2020..22481622828755.3772798-CDS-S-firma_M_contig9276:2020..2248Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2021..2248 +
1697105143.0157335-CDS-S-firma_M_contig9276:2020..22481697105143.0157335-CDS-S-firma_M_contig9276:2020..2248Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2021..2248 +
1622828755.3889856-CDS-S-firma_M_contig9276:2435..26241622828755.3889856-CDS-S-firma_M_contig9276:2435..2624Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2436..2624 +
1697105143.0253465-CDS-S-firma_M_contig9276:2435..26241697105143.0253465-CDS-S-firma_M_contig9276:2435..2624Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2436..2624 +
1622828755.4027002-CDS-S-firma_M_contig9276:2868..29591622828755.4027002-CDS-S-firma_M_contig9276:2868..2959Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2869..2959 +
1697105143.0352254-CDS-S-firma_M_contig9276:2868..29591697105143.0352254-CDS-S-firma_M_contig9276:2868..2959Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 2869..2959 +
1622828755.4169855-CDS-S-firma_M_contig9276:3445..41431622828755.4169855-CDS-S-firma_M_contig9276:3445..4143Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 3446..4143 +
1697105143.0548346-CDS-S-firma_M_contig9276:3445..41431697105143.0548346-CDS-S-firma_M_contig9276:3445..4143Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9276 3446..4143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9276.20223.1

>prot_S-firma_M_contig9276.20223.1 ID=prot_S-firma_M_contig9276.20223.1|Name=mRNA_S-firma_M_contig9276.20223.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=528bp
MLSKTADTPQRAGSLGLKGASQKTVHPCTLCKVTQSSVADDVGGELGDRH
YDFVRNRRKRVEIEDGWRRLSELGFGTPEAVELSKKLGIVEPHPAMLGQP
RALWELTTMHSPMMCVGPELLHLNNLNHLGQSQTFLLDLLSPAGREHVAG
IFRQGRALFGAGVSPLKNPVKDYPGYTGAQKALFGSVQLFVVRGLLSSTA
TMKHYLNSTAINKYNTEVWGGLSDEGALDRLREYFQASSSLSFAANGQEF
TDSDLRQLHTRACDYIENAKLTLGRPGVRMSNHMWLHFADCIKAHGRPQN
ADVSEGGHQAHKRSNKTGSSRDPPAHHARSTNTSLALARLATDEPYTASR
YSYREGKKVTQQVTSGPGCQRVLQAVSSRLRGRLAHVADGTEGTIPTAAM
SKGAYPGSAAWRATILPQDAGASNVSAGSAGTGARESWEACLSEGAVRPS
ADSILRANDRWYACGRSAGDSRGVCSELRCSSCWEGGGGGGRVCRTTTST
AIASSSECLLRSVTEWGGSRGVMSMLI*
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mRNA from alignment at S-firma_M_contig9276:483..4143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9276.20223.1 ID=mRNA_S-firma_M_contig9276.20223.1|Name=mRNA_S-firma_M_contig9276.20223.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3661bp|location=Sequence derived from alignment at S-firma_M_contig9276:483..4143+ (Sphaerotrichia firma Sfir_13m male)
TTTGTACGGGGAGGTATGCTGTCGAAAACCGCGGACACACCCCAGAGAGC
GGGATCACTCGGTTTGAAAGGGGCCAGTCAGAAAACGGTACATCCTTGCA
CACTTTGTAAGGTCACCCAGAGCTCGGTGGCCGACGATGTTGGAGGAGAG
CTCGGCGACAGACATTACGACTTCGTCAGGAACCGCCGTAAGCGGGTAGA
GATCGAGGACGGGTGGAGGAGGCTATCGGAGCTAGGATTCGGGACTCCAG
AAGCTGTGGAGTTGTCAAAGAAGCTAGGCATCGTGGAGCCACACCCCGCG
ATGCTCGGTCAGCCACGTGCGCTTTGGGAGCTGACGACCATGCATTCGCC
CATGATGTGTGTGGGCCCAGAGCTTCTCCATCTGAACAATCTGGTGAGTT
CTTTTTGCCCGTTTCGCCTCACGGTGCGGCCCAGCGTTCGGTCGCGTTTC
GGTTTGAGAACGGTCCCACACAATTTTTTCGTACCAGCTTCGTTTGGAGA
AGCGTGTTTGATGAAATTCAGCAGCTGCGGTTAGGTGTTTTTTCGTCTCA
CCACATCACCTCTTCCGGCATGGCAGCATCCATTCCTTGCCTTTTTCCCG
GGAGCATCGGGTTTTGCGGAAGAACAAAATATCCCCCCCCCCTCCCCCAG
CATTTCCATATTTCGAGAGGGTACCAATTTTAACGTGGGTTCCCCCCCGG
GCGGATGCGCCCCCCCCCCTCCACACACACACACACTTTGAGCCGATCTG
GTAAAATAATTTATCTGCCGAGGGAAGTGTTTGACGAAGCCCCTCGTCCC
CCATTTATCATATGTATAGGCCCCGGAAGAGCCTTTCAAGAACAAAAAGG
TAGTCGCGCCCCGCCGCGCAAAGGACAGCGACGATGTGTTTTCAACCCCA
CTTTTTTGGTACGGCGCTTTTTCACCACGCAGCGTTCATCGTCTGTTCTG
TGCAGAACGTATGCGTCACTGAGCCATGTGAGCTTGTTTGTTTGTGTGTG
GGTGTGGTGTGGTGTGGGTATGATGTGTATGTTTAATACTTTCCCCCGGG
GCGGACAAACACAAAAAAGACCCTAGTCGCCCGGACTTGCCCCAGACGAG
TGTTTGTGACGGGCAAACAAGATCGCTCCCCTGTGGACGTACGATTTTGA
CGACTACGGTAATACTTCGAATACGCCCGACAATTTTTTTCATCCCCTTC
AGATGTGCCCCCCCAGGGTATCAGCGTGTCGGCAACCCTGTACCACACCC
AAAGGTGCTGTAGCTCAATGTTTCATCGGAGTTCCCTTACGCACTCGTGG
TGAAAAAGGTATTACGGTATTGATCTCTGTCACCATCGGCAGGTCTGAGC
GTACCAATGCAAGCAATCGAGAACGTTACGTCCGCGCCTTGTGTCTCCGA
ATTGCACCACGTCGCCCACGGAGCAACCCTAAAACCCAATAAAACACGCA
CGCGTTCATGACATGGCGCTTGCCGCTCTTAACACCTAGCTTTGTTCATG
CTGTCCGTTATTGTGTCGCGCTGGTTCTTGGCTTCAAGAACCACCTCGGT
CAATCGCAGACCTTTCTCCTAGATCTTCTTTCGCCGGCCGGCCGTGAGCA
CGTCGCGGGAATCTTCCGGCAGGGGCGCGCCTTATTTGGCGCAGGGGTTT
CACCACTGAAGAACCCCGTCAAGGACTACCCGGGGTACACGGGCGCGCAG
AAAGCACTTTTTGGGAGTGTTCAGCTTTTCGTTGTGCGCGGGTTGCTGTC
ATCCACGGCGACGATGGTGAGAGCGTTCACCAAGTCGCGGGTGTTTTTTG
CGTGCTATGTATCACGTACCTCAATAGCATCGATGCTGCCATTGGTTTGA
AGGCCGGGTGTTGTTTAACCCTCATTCCACTCCAACCTACGCCATTGACT
GTGTATCATCAACGCCTGTTTTTACCTGCCCTTGCGGACGCTGGAATAAC
CAGAAACACTACCTTAACTCTACGGCGATAAACAAGTATAACACCGAGGT
ATGGGGCGGCTTGAGCGACGAGGGAGCACTTGATCGTTTGCGGGAGTACT
TCCAAGCGTCCTCTTCCCTCTCCTTCGCTGCCAACGGTCAAGAGTTCACA
GATTCCGACCTACGTCAACTGCACACGCGGGCGTGTGACTATGTGAGCGT
TGTGCCAAGCCCAACCTGTTTTATATATAAGTGCTATGCCTATCTGTTGG
TCGAGCGTGGTTGCGCTGCCAGGAGTCGTTTTCTAATGAGTGTTTCGTGC
TTCAAGCCTACCAAACACAACAAATATGTTTTAGAGGTTTCGTTCTTTTG
TCGGAAGCGTTGCTGTTTTTTTCACGCTGAGTTGTCTCTTTGCCCGTGTC
CATTCCACGGTTCGCGTACTTTTGTCAACGACGAAGATCGAAAACGCGAA
ACTTACTTTGGGCCGGCCGGGCGTGAGGATGAGCAACCACATGTGGCTTC
ACTTCGCCGACTGCATCAAGGCGCATGGTGAGGAGAGAAAACGAAGTATA
CGTACTCCAAGTTAAGGCTCCAGCGACGTCAAAGAGAGCTTTTCGTTTTG
CCCGTCGATCGGAACACTGGCAGTACTGCATCGGAGTTCTAAGTTAGGCG
GCGGTGTTTTTTGCCACAACCTGACCAACATCATGCATCGACCTCATGTA
GTGTTTTTTTTTGTGGTGTCGGCTAAGAAAGCGCGCCTTGTAGCCCGCGG
TTTGTGTTGTTCCCCTCGAACGCTACGAGAGACGTGTCAGGTAGAGGCGG
TACCATGGATCTACTTTTACTCATGAAAGTATTGCGAGCACGGGGGGCGG
GGGGGCGGGAGGAGGGGCCGGGGAGGGTGAGGGCGGCGGCGGCTGAGGCT
GCAGGGGGTACTTCTTCTTGATGTCTGTTTTCTTGTGTGGCGCTGCCCAC
GGAAATAAATTATTGTAGCCCTTACGCCGCCACACCTCTCCCTCGTCCTC
CCTTTCCCCCAAGGGCGCCCTCAGAATGCAGATGTAAGCGAGGGAGGACA
CCAAGCCCACAAGAGATCCAACAAGACAGGCAGCTCACGAGACCCGCCAG
CACACCACGCACGTAGCACGAACACGTCGCTGGCGCTCGCTAGGTTGGCG
ACCGACGAGCCCTACACAGCAAGCCGCTACTCCTACAGGGAGGGAAAGAA
GGTTACACAACAAGTGACCTCTGGTCCCGGCTGCCAGCGGGTCCTTCAAG
CGGTCAGCAGCAGGCTGCGGGGAAGGCTAGCCCACGTTGCTGATGGCACC
GAGGGTACAATCCCGACGGCAGCGATGTCTAAGGGGGCGTACCCGGGCTC
GGCCGCTTGGCGGGCGACTATCTTGCCTCAAGACGCAGGGGCCAGCAACG
TCAGCGCGGGCTCAGCAGGCACGGGGGCTCGGGAGTCATGGGAAGCATGT
TTAAGCGAAGGTGCGGTCCGTCCCAGCGCGGACAGCATACTCAGAGCCAA
CGACAGGTGGTATGCCTGCGGGCGATCTGCCGGTGACAGCCGCGGAGTCT
GTTCGGAACTCAGGTGTTCGTCCTGCTGGGAGGGGGGAGGGGGGGGGGGG
AGAGTCTGCAGAACAACGACATCAACTGCTATCGCATCAAGCTCGGAGTG
CCTGCTAAGATCAGTAACGGAATGGGGCGGTTCAAGGGGTGTGATGTCAA
TGTTGATATGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9276:483..4143+

>mRNA_S-firma_M_contig9276.20223.1 ID=mRNA_S-firma_M_contig9276.20223.1|Name=mRNA_S-firma_M_contig9276.20223.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3168bp|location=Sequence derived from alignment at S-firma_M_contig9276:483..4143+ (Sphaerotrichia firma Sfir_13m male)
ATGCTGTCGAAAACCGCGGACACACCCCAGAGAGCGGGATCACTCGGTTT
GAAAGGGGCCAGTCAGAAAACGGTACATCCTTGCACACTTTGTAAGGTCA
CCCAGAGCTCGGTGGCCGACGATGTTGGAGGAGAGCTCGGCGACAGACAT
TACGACTTCGTCAGGAACCGCCGTAAGCGGGTAGAGATCGAGGACGGGTG
GAGGAGGCTATCGGAGCTAGGATTCGGGACTCCAGAAGCTGTGGAGTTGT
CAAAGAAGCTAGGCATCGTGGAGCCACACCCCGCGATGCTCGGTCAGCCA
CGTGCGCTTTGGGAGCTGACGACCATGCATTCGCCCATGATGTGTGTGGG
CCCAGAGCTTCTCCATCTGAACAATCTGATGCTGTCGAAAACCGCGGACA
CACCCCAGAGAGCGGGATCACTCGGTTTGAAAGGGGCCAGTCAGAAAACG
GTACATCCTTGCACACTTTGTAAGGTCACCCAGAGCTCGGTGGCCGACGA
TGTTGGAGGAGAGCTCGGCGACAGACATTACGACTTCGTCAGGAACCGCC
GTAAGCGGGTAGAGATCGAGGACGGGTGGAGGAGGCTATCGGAGCTAGGA
TTCGGGACTCCAGAAGCTGTGGAGTTGTCAAAGAAGCTAGGCATCGTGGA
GCCACACCCCGCGATGCTCGGTCAGCCACGTGCGCTTTGGGAGCTGACGA
CCATGCATTCGCCCATGATGTGTGTGGGCCCAGAGCTTCTCCATCTGAAC
AATCTGAACCACCTCGGTCAATCGCAGACCTTTCTCCTAGATCTTCTTTC
GCCGGCCGGCCGTGAGCACGTCGCGGGAATCTTCCGGCAGGGGCGCGCCT
TATTTGGCGCAGGGGTTTCACCACTGAAGAACCCCGTCAAGGACTACCCG
GGGTACACGGGCGCGCAGAAAGCACTTTTTGGGAGTGTTCAGCTTTTCGT
TGTGCGCGGGTTGCTGTCATCCACGGCGACGATGAACCACCTCGGTCAAT
CGCAGACCTTTCTCCTAGATCTTCTTTCGCCGGCCGGCCGTGAGCACGTC
GCGGGAATCTTCCGGCAGGGGCGCGCCTTATTTGGCGCAGGGGTTTCACC
ACTGAAGAACCCCGTCAAGGACTACCCGGGGTACACGGGCGCGCAGAAAG
CACTTTTTGGGAGTGTTCAGCTTTTCGTTGTGCGCGGGTTGCTGTCATCC
ACGGCGACGATGAAACACTACCTTAACTCTACGGCGATAAACAAGTATAA
CACCGAGGTATGGGGCGGCTTGAGCGACGAGGGAGCACTTGATCGTTTGC
GGGAGTACTTCCAAGCGTCCTCTTCCCTCTCCTTCGCTGCCAACGGTCAA
GAGTTCACAGATTCCGACCTACGTCAACTGCACACGCGGGCGTGTGACTA
TAAACACTACCTTAACTCTACGGCGATAAACAAGTATAACACCGAGGTAT
GGGGCGGCTTGAGCGACGAGGGAGCACTTGATCGTTTGCGGGAGTACTTC
CAAGCGTCCTCTTCCCTCTCCTTCGCTGCCAACGGTCAAGAGTTCACAGA
TTCCGACCTACGTCAACTGCACACGCGGGCGTGTGACTATATCGAAAACG
CGAAACTTACTTTGGGCCGGCCGGGCGTGAGGATGAGCAACCACATGTGG
CTTCACTTCGCCGACTGCATCAAGGCGCATGATCGAAAACGCGAAACTTA
CTTTGGGCCGGCCGGGCGTGAGGATGAGCAACCACATGTGGCTTCACTTC
GCCGACTGCATCAAGGCGCATGGGCGCCCTCAGAATGCAGATGTAAGCGA
GGGAGGACACCAAGCCCACAAGAGATCCAACAAGACAGGCAGCTCACGAG
ACCCGCCAGCACACCACGCACGTAGCACGAACACGTCGCTGGCGCTCGCT
AGGTTGGCGACCGACGAGCCCTACACAGCAAGCCGCTACTCCTACAGGGA
GGGAAAGAAGGTTACACAACAAGTGACCTCTGGTCCCGGCTGCCAGCGGG
TCCTTCAAGCGGTCAGCAGCAGGCTGCGGGGAAGGCTAGCCCACGTTGCT
GATGGCACCGAGGGTACAATCCCGACGGCAGCGATGTCTAAGGGGGCGTA
CCCGGGCTCGGCCGCTTGGCGGGCGACTATCTTGCCTCAAGACGCAGGGG
CCAGCAACGTCAGCGCGGGCTCAGCAGGCACGGGGGCTCGGGAGTCATGG
GAAGCATGTTTAAGCGAAGGTGCGGTCCGTCCCAGCGCGGACAGCATACT
CAGAGCCAACGACAGGTGGTATGCCTGCGGGCGATCTGCCGGTGACAGCC
GCGGAGTCTGTTCGGAACTCAGGTGTTCGTCCTGCTGGGAGGGGGGAGGG
GGGGGGGGGAGAGTCTGCAGAACAACGACATCAACTGCTATCGCATCAAG
CTCGGAGTGCCTGCTAAGATCAGTAACGGAATGGGGCGGTTCAAGGGGTG
TGATGTCAATGTTGATATGAGGCGCCCTCAGAATGCAGATGTAAGCGAGG
GAGGACACCAAGCCCACAAGAGATCCAACAAGACAGGCAGCTCACGAGAC
CCGCCAGCACACCACGCACGTAGCACGAACACGTCGCTGGCGCTCGCTAG
GTTGGCGACCGACGAGCCCTACACAGCAAGCCGCTACTCCTACAGGGAGG
GAAAGAAGGTTACACAACAAGTGACCTCTGGTCCCGGCTGCCAGCGGGTC
CTTCAAGCGGTCAGCAGCAGGCTGCGGGGAAGGCTAGCCCACGTTGCTGA
TGGCACCGAGGGTACAATCCCGACGGCAGCGATGTCTAAGGGGGCGTACC
CGGGCTCGGCCGCTTGGCGGGCGACTATCTTGCCTCAAGACGCAGGGGCC
AGCAACGTCAGCGCGGGCTCAGCAGGCACGGGGGCTCGGGAGTCATGGGA
AGCATGTTTAAGCGAAGGTGCGGTCCGTCCCAGCGCGGACAGCATACTCA
GAGCCAACGACAGGTGGTATGCCTGCGGGCGATCTGCCGGTGACAGCCGC
GGAGTCTGTTCGGAACTCAGGTGTTCGTCCTGCTGGGAGGGGGGAGGGGG
GGGGGGGAGAGTCTGCAGAACAACGACATCAACTGCTATCGCATCAAGCT
CGGAGTGCCTGCTAAGATCAGTAACGGAATGGGGCGGTTCAAGGGGTGTG
ATGTCAATGTTGATATGA
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