mRNA_S-firma_M_contig9247.20193.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig9247.20193.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE) HSP 1 Score: 300 bits (767), Expect = 1.730e-85 Identity = 184/311 (59.16%), Postives = 211/311 (67.85%), Query Frame = 1
Query: 748 EAAEEGPVV-ANADVNGEVAPPLSSLPNQAGAXXXXXXXXXXGGTQLLSRPPQGTFFEAHLPWGKRRRVSGNLRWKMGQRARQSRQV--------------FCAAEGRELVMYDSECDSNAGLPPRGRYLVMGVRSVKNGPGSLELDVTVADDCELVTLGWSGNAAAAAPGLAFVETRSVTLTAPGRHEHARWALALEEAHSWTEQKEREALMEELELSLPFRESAIEHVQDFLPQGTIEDVLGVSAARNNPGCVLKSMVFDAAEAAASA------GPLSSPSPEVPGSGGPGIG--VRKLSGPPSASLRG 1611
E E+ PVV A A + APP + + + G+ Q PPQG F EAHLPWGKRRR+SGNLR K+ R +R+V FCAAEGRELV+YD+E DSNAGLPPR RYLVMGVR++K GP + EL+VTVAD+ E+ +LGW A+ PG+AFVETRSVTLTA GRHEHARW+LALEEA SWTE+KEREAL+EELELSLPFRE AIEHV LP TIED+LGVS A NPGCVLKS+VFDAAEAAASA GPLSSP GS RKL+ PSASLRG
Sbjct: 311 ERGEDRPVVPAGAKTGADAAPPGAGV-DWGGSGGVTTVP------QARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRVATSGGREWGVWGGVFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRALKTGPNAAELEVTVADESEVSSLGWRERASTG-PGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSTIEDILGVSTAMTNPGCVLKSVVFDAAEAAASAAEAAAPGPLSSPELTA-GSXXXXXXXXTRKLTVAPSASLRG 612
BLAST of mRNA_S-firma_M_contig9247.20193.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI) HSP 1 Score: 174 bits (442), Expect = 6.090e-43 Identity = 91/127 (71.65%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 1096 MGVRSVKNGPGSLELDVTVADDCELVTLGWSGNAAAAAPGLAFVETRSVTLTAPGRHEHARWALALEEAHSWTEQKEREALMEELELSLPFRESAIEHVQDFLPQGTIEDVLGVSAARNNPGCVLKS 1476
MGVR++K GP + EL+VTVAD+ E+ +LGW A+ PG+AFVETRSVTLTA GRHEHARW+LALEEA SWTE+KEREAL+EELELSLPFRE AIEHV LP IED+LGVS A NPGCVLKS
Sbjct: 1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTG-PGVAFVETRSVTLTAYGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKS 126
BLAST of mRNA_S-firma_M_contig9247.20193.1 vs. uniprot
Match: D8LRB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB3_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 2.400e-7 Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 1 QASEELYRLVDSSHQTSYDCFNPVFASICQFQEASYSH 114
QASEEL RLV SHQ+S+DC +PVFASICQFQEASY +
Sbjct: 155 QASEELSRLVVISHQSSHDCLDPVFASICQFQEASYRY 192 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9247.20193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig9247.20193.1 >prot_S-firma_M_contig9247.20193.1 ID=prot_S-firma_M_contig9247.20193.1|Name=mRNA_S-firma_M_contig9247.20193.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=568bp QASEELYRLVDSSHQTSYDCFNPVFASICQFQEASYSHGHLLSSMLLRVVback to top mRNA from alignment at S-firma_M_contig9247:132..3737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig9247.20193.1 ID=mRNA_S-firma_M_contig9247.20193.1|Name=mRNA_S-firma_M_contig9247.20193.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3606bp|location=Sequence derived from alignment at S-firma_M_contig9247:132..3737- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig9247:132..3737- >mRNA_S-firma_M_contig9247.20193.1 ID=mRNA_S-firma_M_contig9247.20193.1|Name=mRNA_S-firma_M_contig9247.20193.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3408bp|location=Sequence derived from alignment at S-firma_M_contig9247:132..3737- (Sphaerotrichia firma Sfir_13m male)back to top |