mRNA_S-firma_M_contig924.20188.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig924.20188.1
Unique NamemRNA_S-firma_M_contig924.20188.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig924.20188.1 vs. uniprot
Match: D8LEG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-15
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 RRADEAERDAKDERRLRSLA-PAXXXXXXXXXXXXXXXXXXXXXXXXVDDAAALRRKLKLATSEIEALRTHTTDLRNQIQSGWWSWGAAASEV 276
            RRAD A+ +A+DERRLRSLA PA                          D AALRRKL+LA  EIEALRTHT DLR+Q+QSGWWSW  ++SE 
Sbjct:  136 RRADAAQLEARDERRLRSLAAPAGGGDGSSNSSIQGYTINCATKG----DEAALRRKLELAAGEIEALRTHTRDLRSQVQSGWWSWRPSSSEA 224
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig924.20188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEG9_ECTSI2.840e-1552.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig924contigS-firma_M_contig924:25360..25656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828751.528388-CDS-S-firma_M_contig924:25359..256561622828751.528388-CDS-S-firma_M_contig924:25359..25656Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 25360..25656 +
1697105140.6335227-CDS-S-firma_M_contig924:25359..256561697105140.6335227-CDS-S-firma_M_contig924:25359..25656Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 25360..25656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig924.20188.1prot_S-firma_M_contig924.20188.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig924 25360..25656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig924.20188.1

>prot_S-firma_M_contig924.20188.1 ID=prot_S-firma_M_contig924.20188.1|Name=mRNA_S-firma_M_contig924.20188.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=99bp
RRADEAERDAKDERRLRSLAPAAAAAAAASGGRSTIITRDDDNSDGVDDA
AALRRKLKLATSEIEALRTHTTDLRNQIQSGWWSWGAAASEVATGGQGD
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mRNA from alignment at S-firma_M_contig924:25360..25656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig924.20188.1 ID=mRNA_S-firma_M_contig924.20188.1|Name=mRNA_S-firma_M_contig924.20188.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=297bp|location=Sequence derived from alignment at S-firma_M_contig924:25360..25656+ (Sphaerotrichia firma Sfir_13m male)
CGACGGGCCGACGAGGCCGAGCGCGACGCCAAGGACGAGCGCCGTCTGCG
CTCGCTTGCCCCCGCCGCCGCCGCCGCCGCCGCCGCTAGCGGTGGAAGAA
GCACAATCATCACCCGTGACGATGATAATAGCGATGGCGTCGACGACGCC
GCGGCTCTCCGGCGAAAGCTGAAGCTCGCCACCAGCGAGATCGAGGCGCT
TCGCACTCACACTACGGACCTCCGCAACCAGATCCAGTCCGGCTGGTGGT
CCTGGGGGGCGGCTGCTTCGGAAGTGGCCACCGGGGGCCAAGGGGAC
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Coding sequence (CDS) from alignment at S-firma_M_contig924:25360..25656+

>mRNA_S-firma_M_contig924.20188.1 ID=mRNA_S-firma_M_contig924.20188.1|Name=mRNA_S-firma_M_contig924.20188.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=594bp|location=Sequence derived from alignment at S-firma_M_contig924:25360..25656+ (Sphaerotrichia firma Sfir_13m male)
CGACGGGCCGACGAGGCCGAGCGCGACGCCAAGGACGAGCGCCGTCTGCG
CTCGCTTGCCCCCGCCGCCGCCGCCGCCGCCGCCGCTAGCGGTGGAAGAA
GCACAATCATCACCCGTGACGATGATAATAGCGATGGCGTCGACGACGCC
GCGGCTCTCCGGCGAAAGCTGAAGCTCGCCACCAGCGAGATCGAGGCGCT
TCGCACTCACACTACGGACCTCCGCAACCAGATCCAGTCCGGCTGGTGGT
CCTGGGGGGCGGCTGCTTCGGAAGTGGCCACCGGGGGCCAAGGGGACCGA
CGGGCCGACGAGGCCGAGCGCGACGCCAAGGACGAGCGCCGTCTGCGCTC
GCTTGCCCCCGCCGCCGCCGCCGCCGCCGCCGCTAGCGGTGGAAGAAGCA
CAATCATCACCCGTGACGATGATAATAGCGATGGCGTCGACGACGCCGCG
GCTCTCCGGCGAAAGCTGAAGCTCGCCACCAGCGAGATCGAGGCGCTTCG
CACTCACACTACGGACCTCCGCAACCAGATCCAGTCCGGCTGGTGGTCCT
GGGGGGCGGCTGCTTCGGAAGTGGCCACCGGGGGCCAAGGGGAC
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