mRNA_S-firma_M_contig924.20187.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig924.20187.1
Unique NamemRNA_S-firma_M_contig924.20187.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig924.20187.1 vs. uniprot
Match: D8LEH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.560e-22
Identity = 78/143 (54.55%), Postives = 91/143 (63.64%), Query Frame = 1 
Query:   49 GKEARRLYLLLEEQGLEVVALRQRVLKAEIVARARGKDL-DQARLMIDRLKGRRHGGDCGGAVWRIPGAAGGGAGGVASAAAGRKSE-FVDNASLAEMEGRMAALHAEGNHGQALAAAREAVSALKLALVRSEGEAELQAQLL 471
            GKEARRL+ LLEEQGLEVVALRQRVLKAEIVAR R     D+ R   +  K R                  GG  GV    +  K++  V++A LAEMEGR+A LHA G+  +AL  ARE VSALKLAL+R+EGE EL AQLL
Sbjct:  302 GKEARRLHRLLEEQGLEVVALRQRVLKAEIVARTRDSGRHDEERWAKEEAKER------------------GGLKGVGVEGSSTKTQKLVESAVLAEMEGRVADLHARGDTREALMVARETVSALKLALIRTEGEVELHAQLL 426
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BLAST of mRNA_S-firma_M_contig924.20187.1 vs. uniprot
Match: D8LEG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG9_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.900e-19
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:  541 VAVEETLRGVSGGAVSAVALIDRFAGTLFRQSRRVKDLEEEVRTMRTRCGRLARLARGDSADACSPATAIA 753
            +AVE+TL GV+GG VSA+ALIDRFAGTL+RQSRRVKD+E++V TMR RC RLARLARGD+AD  SP+ A A
Sbjct:    1 MAVEKTLDGVAGGTVSALALIDRFAGTLYRQSRRVKDMEDQVWTMRNRCARLARLARGDTADGGSPSGAAA 71
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig924.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH0_ECTSI3.560e-2254.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEG9_ECTSI1.900e-1973.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig924contigS-firma_M_contig924:22709..24469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size789
Cds size786
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig924.20187.1prot_S-firma_M_contig924.20187.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig924 22709..24467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828751.4496384-CDS-S-firma_M_contig924:22708..231791622828751.4496384-CDS-S-firma_M_contig924:22708..23179Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 22709..23179 +
1697105140.6075385-CDS-S-firma_M_contig924:22708..231791697105140.6075385-CDS-S-firma_M_contig924:22708..23179Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 22709..23179 +
1622828751.4637346-CDS-S-firma_M_contig924:23810..239871622828751.4637346-CDS-S-firma_M_contig924:23810..23987Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 23811..23987 +
1697105140.6163287-CDS-S-firma_M_contig924:23810..239871697105140.6163287-CDS-S-firma_M_contig924:23810..23987Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 23811..23987 +
1622828751.4871805-CDS-S-firma_M_contig924:24329..244671622828751.4871805-CDS-S-firma_M_contig924:24329..24467Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 24330..24467 +
1697105140.6249049-CDS-S-firma_M_contig924:24329..244671697105140.6249049-CDS-S-firma_M_contig924:24329..24467Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig924 24330..24467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig924.20187.1

>prot_S-firma_M_contig924.20187.1 ID=prot_S-firma_M_contig924.20187.1|Name=mRNA_S-firma_M_contig924.20187.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=262bp
GGGGGAGGAGGGARGSGKEARRLYLLLEEQGLEVVALRQRVLKAEIVARA
RGKDLDQARLMIDRLKGRRHGGDCGGAVWRIPGAAGGGAGGVASAAAGRK
SEFVDNASLAEMEGRMAALHAEGNHGQALAAAREAVSALKLALVRSEGEA
ELQAQLLEDERGRSMAALSRAEDLQGRLDRVAVEETLRGVSGGAVSAVAL
IDRFAGTLFRQSRRVKDLEEEVRTMRTRCGRLARLARGDSADACSPATAI
AGTGERASAADE
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mRNA from alignment at S-firma_M_contig924:22709..24469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig924.20187.1 ID=mRNA_S-firma_M_contig924.20187.1|Name=mRNA_S-firma_M_contig924.20187.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at S-firma_M_contig924:22709..24469+ (Sphaerotrichia firma Sfir_13m male)
GGCGGCGGCGGCGGGGCAGGAGGAGCAGGAGGAGGAGCAAGAGGAAGCGG
CAAGGAAGCTCGGCGGCTGTACCTGCTGCTGGAGGAGCAAGGGCTGGAGG
TGGTGGCCCTCCGCCAGCGGGTGCTGAAGGCGGAGATCGTGGCGAGAGCG
AGAGGCAAGGACCTCGACCAGGCCCGCCTGATGATCGACCGGCTCAAAGG
ACGACGGCACGGCGGCGACTGCGGGGGCGCCGTTTGGAGAATCCCTGGTG
CCGCAGGTGGGGGGGCGGGGGGGGTAGCCTCGGCGGCGGCGGGGAGGAAG
AGCGAGTTTGTCGACAACGCGAGCTTGGCGGAGATGGAGGGGCGGATGGC
GGCTCTCCACGCGGAGGGGAACCACGGCCAGGCGCTGGCGGCCGCGCGTG
AGGCGGTGTCGGCGCTGAAGCTGGCGCTGGTTCGTTCGGAGGGCGAGGCC
GAGCTTCAAGCCCAGTTGCTGGTGAGGTATTTCTATCTCCCTACCTGTAC
GGCGCGTGTGTTGTGTGTTGAGTCTTCGGCGCCGTTGTATATTTCGATGT
TGCGCTTGTTTGGCAGCGCAGGCATGCACAGGTTTTTTGCGTTGGGGGGG
TACCGTAGCCTGGTTTTGTGTGACGTTGTTTCTGCTCCGGGTGTGCAGAA
CGACACAACATGTCGGACACTCAGTTGTCGAGCGTCAGGCTTGTCTCAAC
CGGAATGACCTCGGGTTGATTCATTTCCGCGGACGGCCACAGCTTAAAAT
GCTTTGGTTGGGTTTGGTACTGTAGGAGGCGATTTTGATGGATTTGCTCG
TCAGACGATCTCTCGGCCTTTTGTCTTGTGTGGCAGAAATACTGCCAGCT
TCTGGACCGACCCTTTGCCACTTTCCAGGGTTTTCTGTGATATTTTTTGC
GTACAGTAAGGAGTAGCCCGCCGGCTCATACATGCACATACCTACCCCGC
GGTACTTATCCACGTTCCCCCCTCGCCTTCTCCTTCCCCGCACAAACGCC
CAGCAGGGCACCCACTCACCCCCGTGTTCCCCCAGCCCTGCAGTGTGAGC
CGAACTCAAGCCAACCCCCAAATGTTTGCCCTCTTCTTCGCCGACCTTCC
AGGAAGACGAGAGGGGACGATCGATGGCGGCCTTGTCCAGGGCGGAAGAC
CTCCAGGGGAGGCTAGACAGGGTCGCCGTGGAGGAAACCCTCCGCGGGGT
CTCGGGGGGCGCCGTGAGCGCGGTGGCCCTGATCGATCGCTTCGCCGGGA
CGCTGTTCCGACAGTCCCGTCGTGTCAAGGTTGGTACCATAGCGCGCTCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTACTTTGCATCG
CCCTCGCTATCCGGCTGACCAGTGAAAAGACTTCAGCCTTCAGCGGGGTA
AAAACGCAAGATGGTTTTCCTCTCTCTGTGTGTGTTGTGCTGGTTTACAC
GCCTTTGTGTGGATGTAAAGCGGTGGAGGGAGACGTCGTATTTGAACGTC
CGACACACGGGGAATGTTGCGTTATGCCACGCGAGGAGGGGTGGAGGGAT
AGTGGCGGTAATGGTGTGCACTGCTGTTTGCCACACGACTGACTCTCGGT
CAACTTTTCACCCCAAAAAAGGACCTCGAGGAAGAAGTTCGGACCATGCG
GACGCGGTGCGGCCGACTGGCTCGCCTGGCTCGCGGCGACTCCGCTGATG
CCTGCTCCCCTGCTACCGCCATCGCCGGCACCGGAGAGCGAGCATCAGCA
GCGGACGAGTG
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Coding sequence (CDS) from alignment at S-firma_M_contig924:22709..24469+

>mRNA_S-firma_M_contig924.20187.1 ID=mRNA_S-firma_M_contig924.20187.1|Name=mRNA_S-firma_M_contig924.20187.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1572bp|location=Sequence derived from alignment at S-firma_M_contig924:22709..24469+ (Sphaerotrichia firma Sfir_13m male)
GGCGGCGGCGGCGGGGCAGGAGGAGCAGGAGGAGGAGCAAGAGGAAGCGG
CAAGGAAGCTCGGCGGCTGTACCTGCTGCTGGAGGAGCAAGGGCTGGAGG
TGGTGGCCCTCCGCCAGCGGGTGCTGAAGGCGGAGATCGTGGCGAGAGCG
AGAGGCAAGGACCTCGACCAGGCCCGCCTGATGATCGACCGGCTCAAAGG
ACGACGGCACGGCGGCGACTGCGGGGGCGCCGTTTGGAGAATCCCTGGTG
CCGCAGGTGGGGGGGCGGGGGGGGTAGCCTCGGCGGCGGCGGGGAGGAAG
AGCGAGTTTGTCGACAACGCGAGCTTGGCGGAGATGGAGGGGCGGATGGC
GGCTCTCCACGCGGAGGGGAACCACGGCCAGGCGCTGGCGGCCGCGCGTG
AGGCGGTGTCGGCGCTGAAGCTGGCGCTGGTTCGTTCGGAGGGCGAGGCC
GAGCTTCAAGCCCAGTTGCTGGGCGGCGGCGGCGGGGCAGGAGGAGCAGG
AGGAGGAGCAAGAGGAAGCGGCAAGGAAGCTCGGCGGCTGTACCTGCTGC
TGGAGGAGCAAGGGCTGGAGGTGGTGGCCCTCCGCCAGCGGGTGCTGAAG
GCGGAGATCGTGGCGAGAGCGAGAGGCAAGGACCTCGACCAGGCCCGCCT
GATGATCGACCGGCTCAAAGGACGACGGCACGGCGGCGACTGCGGGGGCG
CCGTTTGGAGAATCCCTGGTGCCGCAGGTGGGGGGGCGGGGGGGGTAGCC
TCGGCGGCGGCGGGGAGGAAGAGCGAGTTTGTCGACAACGCGAGCTTGGC
GGAGATGGAGGGGCGGATGGCGGCTCTCCACGCGGAGGGGAACCACGGCC
AGGCGCTGGCGGCCGCGCGTGAGGCGGTGTCGGCGCTGAAGCTGGCGCTG
GTTCGTTCGGAGGGCGAGGCCGAGCTTCAAGCCCAGTTGCTGGAAGACGA
GAGGGGACGATCGATGGCGGCCTTGTCCAGGGCGGAAGACCTCCAGGGGA
GGCTAGACAGGGTCGCCGTGGAGGAAACCCTCCGCGGGGTCTCGGGGGGC
GCCGTGAGCGCGGTGGCCCTGATCGATCGCTTCGCCGGGACGCTGTTCCG
ACAGTCCCGTCGTGTCAAGGAAGACGAGAGGGGACGATCGATGGCGGCCT
TGTCCAGGGCGGAAGACCTCCAGGGGAGGCTAGACAGGGTCGCCGTGGAG
GAAACCCTCCGCGGGGTCTCGGGGGGCGCCGTGAGCGCGGTGGCCCTGAT
CGATCGCTTCGCCGGGACGCTGTTCCGACAGTCCCGTCGTGTCAAGGACC
TCGAGGAAGAAGTTCGGACCATGCGGACGCGGTGCGGCCGACTGGCTCGC
CTGGCTCGCGGCGACTCCGCTGATGCCTGCTCCCCTGCTACCGCCATCGC
CGGCACCGGAGAGCGAGCATCAGCAGCGGACGAGGACCTCGAGGAAGAAG
TTCGGACCATGCGGACGCGGTGCGGCCGACTGGCTCGCCTGGCTCGCGGC
GACTCCGCTGATGCCTGCTCCCCTGCTACCGCCATCGCCGGCACCGGAGA
GCGAGCATCAGCAGCGGACGAG
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