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Homology
BLAST of mRNA_S-firma_M_contig919.20134.1 vs. uniprot
Match: A0A6H5K3E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E6_9PHAE) HSP 1 Score: 359 bits (921), Expect = 2.210e-116 Identity = 247/476 (51.89%), Postives = 296/476 (62.18%), Query Frame = 1
Query: 1 GLAARVKAGQPAFAWDDPTAVYSSPGGINGKAPANEAPSTEDEGVRRDPRNIGRPAFYDREALREQIKALQDENRDLSNKEVDLGLRLTKAQATLSGMRTKKRALSEEKILDEAASVVPAKGKSAGRIAHPWGEKYRDSSSNGEGASKRHEARDQQRQEKTNFAAQDRIMELELLNDQLRKGQGEAERQAKSQQAASDAARADVQRVLQRLKAMPKRFTQSLPSLRDEVDRLEREKLSLELAKQQKTLKEADLLAAAKRQQGYLREELASLLDEIDDVEEDRERWKRRLRVESTRAGSLRSQRDEALGALRQRFGGDAVERAAFAFFSN--------TRNKTRVGGRGGAEWGGRQRARGDVPIDEAGDDDLAGMTSGRFGDGIDDDGECPTIPASMIAKALKPAYGPDCGYASDGGGEGSAAVVLTAEXXXXXXXXXXXXXXXIKSEGEDRQGLRLTFEEFLAVAERLTRRGVDH 1404
GL ARV AG+P +AWDDP G A E + R + FYD+EAL+EQ++ L+ E DLS KE LG RL KAQATLS MR K LS+ K+LDE SV PA+ G+K+R+S SNG+ +R EAR QQR E+TNFAAQDR+MELELLN QLRKGQ EAER AK Q+A + RA+V +V +RLKAMPKRFTQSL SL+DEV+ LEREK LELAK++KT KEADLLA+AKRQQ YL EEL+SLLDEIDDVE+DR+RWKRRLRVE+TR SLRSQR+EAL ALR+RFG DAVER AFA F+ +R G RGG G + D E GD D G D G P I SMI+KALKP YGPDC + DGGGEG A +LT E K + G+ + ++EF A+A+RL R + H
Sbjct: 17 GLVARVNAGKPVYAWDDP--------GTRPGASLKEGGKVGRDHNRHLRHQNTQAPFYDKEALQEQLQGLRAEGIDLSEKEARLGFRLAKAQATLSRMREKMVGLSQAKMLDEVMSVFPARAADVS-----VGKKHRESESNGDYGGRR-EARSQQRHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEATFRSTRAEVNKVAERLKAMPKRFTQSLQSLQDEVETLEREKFDLELAKERKTSKEADLLASAKRQQSYLGEELSSLLDEIDDVEDDRDRWKRRLRVETTRTESLRSQREEALRALRERFGSDAVERVAFARFATGPKGSGKGLMTLSRRGRRGGRGTGSDRDEEDDY---EDGDHDSGERDDSGERGGFSDLGS-PKILVSMISKALKPVYGPDCDH--DGGGEGFA--LLTDEAVAEAALSECGIDCSEKEAADVEGGVGVGYDEFRAIAKRLVERRMAH 470
BLAST of mRNA_S-firma_M_contig919.20134.1 vs. uniprot
Match: D7G7D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D4_ECTSI) HSP 1 Score: 349 bits (896), Expect = 9.590e-113 Identity = 246/471 (52.23%), Postives = 292/471 (62.00%), Query Frame = 1
Query: 1 GLAARVKAGQPAFAWDDPTAVYSSPGGINGKAPANEAPSTEDEGVRRDPRNIGRPAFYDREALREQIKALQDENRDLSNKEVDLGLRLTKAQATLSGMRTKKRALSEEKILDEAASVVPAKGKSAGRIAHPWGEKYRDSSSNGEGASKRHEARDQQRQEKTNFAAQDRIMELELLNDQLRKGQGEAERQAKSQQAASDAARADVQRVLQRLKAMPKRFTQSLPSLRDEVDRLEREKLSLELAKQQKTLKEADLLAAAKRQQGYLREELASLLDEIDDVEEDRERWKRRLRVESTRAGSLRSQRDEALGALRQRFGGDAVERAAFAFFSNTRNKTRVGG------RGGAEWGGRQRARGDVPIDEAGDDDLAGMTSGRFGDGIDDDG-ECPTIPASMIAKALKPAYGPDCGYASDGGGEGSAAVVLTAEXXXXXXXXXXXXXXXIKSEGEDRQGLRLTFEEFLAVAERLTRR 1392
GL ARVKAG+P +AWDDP + GKA + + + FYD+EAL+EQ++ LQ E DLS KE LGLRL KAQATLS MR KK LS+ K+LDE SV PAK A I+ G K+R+S SNG+G +R EAR QQR E+TNFAAQDR+MELELLN QLRKGQ EAER AK Q+ + RA+V +V +RLKAMPKRFTQSL SLRDEV+ LEREK +LELAK++KT KEADL+A+AKRQQ YL EEL SLLDEIDDVE+DR+RWKRRLRVE+TRA SLRSQRDEAL ALR+RFG DAVERAAFA F+ + G RG G + G P IP SMI+KALKP YGPD Y DGGGEG A + A +E E G+ + ++EF A+A+RL R
Sbjct: 4 GLVARVKAGKPVYAWDDPGTRPGASLEERGKAGRHHNRHLRYQN--------NQAPFYDKEALQEQLQGLQAEGIDLSEKETHLGLRLAKAQATLSKMREKKVGLSQAKMLDEVMSVFPAK---AADIS--VGRKHRESESNGDGGGRR-EARSQQRHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEDTFRSTRAEVNKVAERLKAMPKRFTQSLQSLRDEVETLEREKFNLELAKERKTSKEADLIASAKRQQSYLGEELKSLLDEIDDVEDDRDRWKRRLRVETTRAESLRSQRDEALRALRERFGSDAVERAAFARFATAPKGSGGDGLMALSRRGWXXXXXXXXXXXXXXXXXYGXXXXXXXXXXXXXEKGGFSGLRSPKIPVSMISKALKPVYGPD--YDHDGGGEGFALLTEEAVGEAVLSECGIDCSAMEATEVEG-GGVGVGYDEFRAIAKRLVER 457
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-04_003230.1 |
| Exons | 4 |
| Model size | 1422 |
| Cds size | 1422 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622828745.4648604-CDS-S-firma_M_contig919:9891..10444 | 1622828745.4648604-CDS-S-firma_M_contig919:9891..10444 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 9892..10444 - |
| 1697105136.831901-CDS-S-firma_M_contig919:9891..10444 | 1697105136.831901-CDS-S-firma_M_contig919:9891..10444 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 9892..10444 - |
| 1622828745.4956527-CDS-S-firma_M_contig919:10872..10994 | 1622828745.4956527-CDS-S-firma_M_contig919:10872..10994 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 10873..10994 - |
| 1697105136.842531-CDS-S-firma_M_contig919:10872..10994 | 1697105136.842531-CDS-S-firma_M_contig919:10872..10994 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 10873..10994 - |
| 1622828745.5305636-CDS-S-firma_M_contig919:11242..11503 | 1622828745.5305636-CDS-S-firma_M_contig919:11242..11503 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 11243..11503 - |
| 1697105136.8527534-CDS-S-firma_M_contig919:11242..11503 | 1697105136.8527534-CDS-S-firma_M_contig919:11242..11503 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 11243..11503 - |
| 1622828745.5485914-CDS-S-firma_M_contig919:11816..12302 | 1622828745.5485914-CDS-S-firma_M_contig919:11816..12302 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 11817..12302 - |
| 1697105136.8628466-CDS-S-firma_M_contig919:11816..12302 | 1697105136.8628466-CDS-S-firma_M_contig919:11816..12302 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig919 11817..12302 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig919.20134.1 >prot_S-firma_M_contig919.20134.1 ID=prot_S-firma_M_contig919.20134.1|Name=mRNA_S-firma_M_contig919.20134.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=474bp
GLAARVKAGQPAFAWDDPTAVYSSPGGINGKAPANEAPSTEDEGVRRDPR NIGRPAFYDREALREQIKALQDENRDLSNKEVDLGLRLTKAQATLSGMRT KKRALSEEKILDEAASVVPAKGKSAGRIAHPWGEKYRDSSSNGEGASKRH EARDQQRQEKTNFAAQDRIMELELLNDQLRKGQGEAERQAKSQQAASDAA RADVQRVLQRLKAMPKRFTQSLPSLRDEVDRLEREKLSLELAKQQKTLKE ADLLAAAKRQQGYLREELASLLDEIDDVEEDRERWKRRLRVESTRAGSLR SQRDEALGALRQRFGGDAVERAAFAFFSNTRNKTRVGGRGGAEWGGRQRA RGDVPIDEAGDDDLAGMTSGRFGDGIDDDGECPTIPASMIAKALKPAYGP DCGYASDGGGEGSAAVVLTAEAVAEAVASECGADCSIKSEGEDRQGLRLT FEEFLAVAERLTRRGVDHTTRSD* back to topmRNA from alignment at S-firma_M_contig919:9892..12302- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig919.20134.1 ID=mRNA_S-firma_M_contig919.20134.1|Name=mRNA_S-firma_M_contig919.20134.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2411bp|location=Sequence derived from alignment at S-firma_M_contig919:9892..12302- (Sphaerotrichia firma Sfir_13m male) GGCCTGGCGGCACGCGTCAAAGCAGGGCAACCAGCTTTTGCTTGGGACGA
CCCGACGGCCGTATACTCTAGCCCTGGCGGGATCAATGGTAAAGCACCAG
CGAACGAAGCACCATCCACGGAAGACGAAGGTGTTCGTCGAGACCCACGA
AATATAGGGCGACCCGCATTCTACGACAGAGAAGCCTTACGGGAGCAGAT
AAAGGCTCTCCAGGACGAGAACCGGGATCTTTCCAACAAGGAGGTCGACT
TGGGGCTGAGATTGACCAAGGCGCAAGCAACCCTGTCGGGTATGCGGACT
AAAAAGCGCGCACTTTCCGAGGAAAAAATATTAGATGAGGCTGCCTCGGT
CGTGCCGGCGAAAGGCAAGAGTGCAGGGCGAATTGCACACCCCTGGGGGG
AGAAGTATCGAGACAGCAGTAGTAACGGCGAGGGCGCTAGCAAGAGGCAC
GAAGCGAGGGATCAACAGCGTCAAGAAAAAACAAATGTGAGCAAGGTACT
CGACAACACGGTAGCTACACTTTGAGAGGTACTGCTGTAGCGGATCATCA
TGTGCTGCCCGGAACTTCTGCCCCTCCGTCGATGCTTTTAGCTTCCCTCG
AATAATGTATTCAAGTGCCGCAAGGAGCTACTCAAAACTCAGCACATCTA
AGGTGATACTGATGTGGCTCACAGCAGCAGGAAAAGTTCTGCTTGATTCG
AAACAACTAATGAAGCAACACCACGAGGCACGGGCCACCCTCAGTTTCAT
CCCTCTCCGCGGGGAGGGTGCCTACCTAAGCAGCCATCGTATTCACCAGT
TTGCAGCGCAGGACAGAATAATGGAGCTGGAACTCTTGAACGATCAGCTG
AGGAAAGGCCAGGGGGAGGCTGAAAGGCAGGCTAAGTCGCAGCAGGCCGC
CTCCGACGCTGCCAGAGCGGACGTGCAGAGAGTATTGCAGAGGCTGAAGG
CCATGCCGAAGCGATTCACCCAGAGCCTGCCGTCGCTGCGGGACGAAGTG
GACAGGCTGGAGCGCGAAAAGCTGTCGTTGGAGCTAGCGAAGCAACAGAA
GACCTTGAAGGTATATAGCGGTTCGAACAACTGTCCTTCTGTCACGATAC
GGCACGGTGAGAGTATTTCTCGTCTGTACATAAACGTTGACCCCATCTCC
CTAAACGAATAGGCCCCACCCCGGCACACGGAAGCTAGCGCATGAAGGAA
ACAGGCGAGGCTCCGATGGTACTTGCTAGTTTTTGTGTTTTCAGGTACAG
TATCATAGTACGTGCTCAACAGATCGGTAACATCACCCGTAACAATCCAC
TCGCACAGGAAGCTGATCTGCTAGCCGCTGCGAAGAGGCAACAGGGGTAC
CTGAGAGAAGAGCTGGCCTCCCTTTTGGATGAAATCGACGACGTCGAAGA
AGACCGAGAACGATGGAAGCGCCGGCTCCGGTGAGAAACAGCCTGAAATA
GAATCGGCGACGACTGGAGACGTACATGGTACGAAGCTGAGCCTTGGAGG
CAATCAACACATTATTGGTTTCTAGGCGAAGGATGCAAGCCGTACCAATT
CTCATGTCTCCAGCAAAACCCTGTTTTTGACATAGTTTTTCTCTATGAAG
CCATCCGTTGCTCTCGGATGGCGCTCGCTTTCACCGCAACCAAGTTGGTC
TCCCAAGCTTGAACTTCGTGGTCGTGCCTATCTGAGGACGTTTTTGGTAC
GTACCACGCCTACCCGCTATCACCGGGAGTTAGTGCGTCTGCCTCCACAA
GCAGCGGGGAGCACGTACGGTATTCCTATGCCGAGATCATATGCCGAGAA
ATAAAAATATTTCCCCGTTATTCTCCGTTCCCGAATACACCGTGAATGCT
GCATGCAGGGTGGAGTCCACTCGCGCCGGGTCATTGCGCTCCCAGCGCGA
CGAGGCCCTCGGAGCTCTGAGGCAGCGTTTCGGTGGCGATGCCGTCGAGC
GAGCGGCGTTCGCGTTCTTCTCAAATACGCGCAACAAGACCAGGGTAGGA
GGACGAGGAGGGGCAGAGTGGGGGGGGCGGCAGAGAGCAAGGGGTGACGT
ACCCATAGACGAGGCCGGGGACGATGACCTCGCCGGCATGACGAGTGGTA
GATTCGGAGACGGCATAGACGACGATGGCGAGTGTCCCACAATACCGGCG
TCGATGATAGCGAAGGCGTTGAAACCGGCGTACGGGCCGGACTGCGGCTA
CGCTAGTGATGGTGGGGGCGAGGGGAGTGCAGCGGTGGTTCTTACGGCCG
AGGCTGTCGCGGAGGCGGTGGCGTCGGAGTGTGGGGCAGACTGTTCGATT
AAGAGCGAGGGAGAAGACAGGCAGGGGTTGCGACTGACGTTTGAGGAGTT
CCTGGCCGTTGCGGAGCGGTTGACGAGGAGGGGGGTGGATCACACCACTC
GTTCCGATTGA back to topCoding sequence (CDS) from alignment at S-firma_M_contig919:9892..12302- >mRNA_S-firma_M_contig919.20134.1 ID=mRNA_S-firma_M_contig919.20134.1|Name=mRNA_S-firma_M_contig919.20134.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2844bp|location=Sequence derived from alignment at S-firma_M_contig919:9892..12302- (Sphaerotrichia firma Sfir_13m male) GGCCTGGCGGCACGCGTCAAAGCAGGGCAACCAGCTTTTGCTTGGGACGA CCCGACGGCCGTATACTCTAGCCCTGGCGGGATCAATGGTAAAGCACCAG CGAACGAAGCACCATCCACGGAAGACGAAGGTGTTCGTCGAGACCCACGA AATATAGGGCGACCCGCATTCTACGACAGAGAAGCCTTACGGGAGCAGAT AAAGGCTCTCCAGGACGAGAACCGGGATCTTTCCAACAAGGAGGTCGACT TGGGGCTGAGATTGACCAAGGCGCAAGCAACCCTGTCGGGTATGCGGACT AAAAAGCGCGCACTTTCCGAGGAAAAAATATTAGATGAGGCTGCCTCGGT CGTGCCGGCGAAAGGCAAGAGTGCAGGGCGAATTGCACACCCCTGGGGGG AGAAGTATCGAGACAGCAGTAGTAACGGCGAGGGCGCTAGCAAGAGGCAC GAAGCGAGGGATCAACAGCGTCAAGAAAAAACAAATGGCCTGGCGGCACG CGTCAAAGCAGGGCAACCAGCTTTTGCTTGGGACGACCCGACGGCCGTAT ACTCTAGCCCTGGCGGGATCAATGGTAAAGCACCAGCGAACGAAGCACCA TCCACGGAAGACGAAGGTGTTCGTCGAGACCCACGAAATATAGGGCGACC CGCATTCTACGACAGAGAAGCCTTACGGGAGCAGATAAAGGCTCTCCAGG ACGAGAACCGGGATCTTTCCAACAAGGAGGTCGACTTGGGGCTGAGATTG ACCAAGGCGCAAGCAACCCTGTCGGGTATGCGGACTAAAAAGCGCGCACT TTCCGAGGAAAAAATATTAGATGAGGCTGCCTCGGTCGTGCCGGCGAAAG GCAAGAGTGCAGGGCGAATTGCACACCCCTGGGGGGAGAAGTATCGAGAC AGCAGTAGTAACGGCGAGGGCGCTAGCAAGAGGCACGAAGCGAGGGATCA ACAGCGTCAAGAAAAAACAAATTTTGCAGCGCAGGACAGAATAATGGAGC TGGAACTCTTGAACGATCAGCTGAGGAAAGGCCAGGGGGAGGCTGAAAGG CAGGCTAAGTCGCAGCAGGCCGCCTCCGACGCTGCCAGAGCGGACGTGCA GAGAGTATTGCAGAGGCTGAAGGCCATGCCGAAGCGATTCACCCAGAGCC TGCCGTCGCTGCGGGACGAAGTGGACAGGCTGGAGCGCGAAAAGCTGTCG TTGGAGCTAGCGAAGCAACAGAAGACCTTGAAGTTTGCAGCGCAGGACAG AATAATGGAGCTGGAACTCTTGAACGATCAGCTGAGGAAAGGCCAGGGGG AGGCTGAAAGGCAGGCTAAGTCGCAGCAGGCCGCCTCCGACGCTGCCAGA GCGGACGTGCAGAGAGTATTGCAGAGGCTGAAGGCCATGCCGAAGCGATT CACCCAGAGCCTGCCGTCGCTGCGGGACGAAGTGGACAGGCTGGAGCGCG AAAAGCTGTCGTTGGAGCTAGCGAAGCAACAGAAGACCTTGAAGGAAGCT GATCTGCTAGCCGCTGCGAAGAGGCAACAGGGGTACCTGAGAGAAGAGCT GGCCTCCCTTTTGGATGAAATCGACGACGTCGAAGAAGACCGAGAACGAT GGAAGCGCCGGCTCCGGAAGCTGATCTGCTAGCCGCTGCGAAGAGGCAAC AGGGGTACCTGAGAGAAGAGCTGGCCTCCCTTTTGGATGAAATCGACGAC GTCGAAGAAGACCGAGAACGATGGAAGCGCCGGCTCCGGGTGGAGTCCAC TCGCGCCGGGTCATTGCGCTCCCAGCGCGACGAGGCCCTCGGAGCTCTGA GGCAGCGTTTCGGTGGCGATGCCGTCGAGCGAGCGGCGTTCGCGTTCTTC TCAAATACGCGCAACAAGACCAGGGTAGGAGGACGAGGAGGGGCAGAGTG GGGGGGGCGGCAGAGAGCAAGGGGTGACGTACCCATAGACGAGGCCGGGG ACGATGACCTCGCCGGCATGACGAGTGGTAGATTCGGAGACGGCATAGAC GACGATGGCGAGTGTCCCACAATACCGGCGTCGATGATAGCGAAGGCGTT GAAACCGGCGTACGGGCCGGACTGCGGCTACGCTAGTGATGGTGGGGGCG AGGGGAGTGCAGCGGTGGTTCTTACGGCCGAGGCTGTCGCGGAGGCGGTG GCGTCGGAGTGTGGGGCAGACTGTTCGATTAAGAGCGAGGGAGAAGACAG GCAGGGGTTGCGACTGACGTTTGAGGAGTTCCTGGCCGTTGCGGAGCGGT TGACGAGGAGGGGGGTGGATCACACCACTCGTTCCGATTGAGGTGGAGTC CACTCGCGCCGGGTCATTGCGCTCCCAGCGCGACGAGGCCCTCGGAGCTC TGAGGCAGCGTTTCGGTGGCGATGCCGTCGAGCGAGCGGCGTTCGCGTTC TTCTCAAATACGCGCAACAAGACCAGGGTAGGAGGACGAGGAGGGGCAGA GTGGGGGGGGCGGCAGAGAGCAAGGGGTGACGTACCCATAGACGAGGCCG GGGACGATGACCTCGCCGGCATGACGAGTGGTAGATTCGGAGACGGCATA GACGACGATGGCGAGTGTCCCACAATACCGGCGTCGATGATAGCGAAGGC GTTGAAACCGGCGTACGGGCCGGACTGCGGCTACGCTAGTGATGGTGGGG GCGAGGGGAGTGCAGCGGTGGTTCTTACGGCCGAGGCTGTCGCGGAGGCG GTGGCGTCGGAGTGTGGGGCAGACTGTTCGATTAAGAGCGAGGGAGAAGA CAGGCAGGGGTTGCGACTGACGTTTGAGGAGTTCCTGGCCGTTGCGGAGC GGTTGACGAGGAGGGGGGTGGATCACACCACTCGTTCCGATTGA back to top
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