mRNA_S-firma_M_contig9169.20109.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9169.20109.1
Unique NamemRNA_S-firma_M_contig9169.20109.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9169.20109.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.160e-14
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:   60 MKTLKKKFSIYQSSQKVRKLWCDYSEAKSAVASPFSSSTTSAE 188
            MKTLKKKFSIYQSSQKVRKLWCDYSEAKS + SP+SSSTTSAE
Sbjct:    1 MKTLKKKFSIYQSSQKVRKLWCDYSEAKSGIESPYSSSTTSAE 43
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BLAST of mRNA_S-firma_M_contig9169.20109.1 vs. uniprot
Match: A0A6H5K3Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Z3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.590e-5
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  102 QKVRKLWCDYSEAKSAVASPFSSSTTSAE 188
            ++VRKLWCDYSEAKS + SP+SSSTTSAE
Sbjct:   21 KQVRKLWCDYSEAKSGIESPYSSSTTSAE 49
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9169.20109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQH1_ECTSI1.160e-1490.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3Z3_9PHAE4.590e-579.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9169contigS-firma_M_contig9169:2070..3470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LQH1
EggNOG OGs2C9IK@1,2QS1U@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size313
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9169.20109.1prot_S-firma_M_contig9169.20109.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9169 2129..3470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828742.8253407-UTR-S-firma_M_contig9169:2069..21281622828742.8253407-UTR-S-firma_M_contig9169:2069..2128Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9169 2070..2128 +
1697105135.395331-UTR-S-firma_M_contig9169:2069..21281697105135.395331-UTR-S-firma_M_contig9169:2069..2128Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9169 2070..2128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828742.8442864-CDS-S-firma_M_contig9169:2128..21761622828742.8442864-CDS-S-firma_M_contig9169:2128..2176Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 2129..2176 +
1697105135.407912-CDS-S-firma_M_contig9169:2128..21761697105135.407912-CDS-S-firma_M_contig9169:2128..2176Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 2129..2176 +
1622828742.859281-CDS-S-firma_M_contig9169:3254..33361622828742.859281-CDS-S-firma_M_contig9169:3254..3336Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 3255..3336 +
1697105135.417894-CDS-S-firma_M_contig9169:3254..33361697105135.417894-CDS-S-firma_M_contig9169:3254..3336Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 3255..3336 +
1622828742.8753304-CDS-S-firma_M_contig9169:3348..34701622828742.8753304-CDS-S-firma_M_contig9169:3348..3470Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 3349..3470 +
1697105135.4285288-CDS-S-firma_M_contig9169:3348..34701697105135.4285288-CDS-S-firma_M_contig9169:3348..3470Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9169 3349..3470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9169.20109.1

>prot_S-firma_M_contig9169.20109.1 ID=prot_S-firma_M_contig9169.20109.1|Name=mRNA_S-firma_M_contig9169.20109.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=84bp
MKTLKKKFSIYQSSQKVRKLWCDYSEAKSAVASPFSSSTTSAEKGEGEGE
GEGDDFDAAAAAAAATPTSTSTSTSVPSSGSIDL
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mRNA from alignment at S-firma_M_contig9169:2070..3470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9169.20109.1 ID=mRNA_S-firma_M_contig9169.20109.1|Name=mRNA_S-firma_M_contig9169.20109.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at S-firma_M_contig9169:2070..3470+ (Sphaerotrichia firma Sfir_13m male)
CAGCGATAGGGCGACGGGCGCAGCTGGCAGCAGGGCGGTCGGCGGGGCCA
TCCTTTTGAATGAAGACCCTCAAGAAGAAGTTCTCCATCTACCAATCGAG
CCAGAAGGTCAGAGCTGGCTGACAGTTTCCACAAGAGTATTCGTTTCACA
GGGTTTTCACACGTCGCGAAACATATGTTCGATACAATACGGACACCGAG
CCGTTCTCTTGCTTGTCGCAGACAGAATAGGCACGCTCTTGAACCCTCTC
GTGACTGCTGCTGGAAAAGGAGAGCCCTTTTTCTTGAAGAGAGGAAAAAG
TACTCCGGTGGGGGTTGCCTGAAAAAGAGCGAGTTGGAATTATTCATATC
ATGCCGGTGGAAGAAGAGGGGAACGTGCCTGCCTGCCCACGGAAAGAATC
CTATCCTTCGCAGGGGTGTGGTGGATCGTGTGCCCCTGAGTTCAGGTAGT
TTACGTCCAGGCCAATCCAGGCTGTTGGCACGCACCGCAGTTGTATCCGA
TTGGCCTCGGTATTTTTGTATTTTTGAAGATGCGCAGAAAGACCTGGCGC
GCACCTTGATTTGACACTCCTCCCGGCATGCCCGCATGTGGTGCTACGGT
GTGCCACAACCCTTTCACCAGGTAACTCTGCTGTACACGAAGACTAACGT
CACGTACACTTACCTACATATACCTTTATATTTACCTACTCCATATGGAG
TATTACTTCGAAGTATAAATAGATGGGAAGAACACACATTACAGCAGTAC
ATATCATAGCAACAGCCGTTCTAGGGCGGCGTTGTGTTTATTGGCCCTCT
CTCACTGCACGACAAAGCCTGCGGGTGTGCGTAAAGGTGTGTCACTGCCC
CCCCTCTTCTAAAGTGGCGACGCCAACGCGTATCGTATGTGCAATGTGCA
ACCAAGCGTGAGCGACACACCCACTACAGTACCCCGACACTTCCACGTCT
CTCTGTCTCTCTCTCGTAGTAATAACATTCCCCGGCCGCCACTATGATAC
AAAGTCAGTCTACTAACCCACTACAACAAAGTACCTACCGGTACTTCGAA
GAGTATTTAATATTTTATACTACTGTACTCTGTACTCCACGCCTTGTTCC
ACGTCTCGCCTTTGACCAGAGGTACCTGTTACCAAAATAGATGGGAAGAA
CACACACACACACACTCCATGGTTTTGTTTCCCAGGTCCGAAAGCTCTGG
TGCGACTATAGCGAGGCCAAGAGCGCCGTTGCCAGCCCTTTCAGCAGCTC
CACGACTAGCGCGGAGAGCCGGGAAGGAGAAGGAGAGGGAGAGGGAGAGG
GAGAGGGAGACGACTTCGATGCCGCCGCCGCCGCCGCCGCCGCCACGCCG
ACCTCGACCTCGACCTCGACCTCAGTCCCGAGCTCTGGCTCGATAGACCT
A
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Coding sequence (CDS) from alignment at S-firma_M_contig9169:2070..3470+

>mRNA_S-firma_M_contig9169.20109.1 ID=mRNA_S-firma_M_contig9169.20109.1|Name=mRNA_S-firma_M_contig9169.20109.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=504bp|location=Sequence derived from alignment at S-firma_M_contig9169:2070..3470+ (Sphaerotrichia firma Sfir_13m male)
ATGAAGACCCTCAAGAAGAAGTTCTCCATCTACCAATCGAGCCAGAAGAT
GAAGACCCTCAAGAAGAAGTTCTCCATCTACCAATCGAGCCAGAAGGTCC
GAAAGCTCTGGTGCGACTATAGCGAGGCCAAGAGCGCCGTTGCCAGCCCT
TTCAGCAGCTCCACGACTAGCGCGGAGAGTCCGAAAGCTCTGGTGCGACT
ATAGCGAGGCCAAGAGCGCCGTTGCCAGCCCTTTCAGCAGCTCCACGACT
AGCGCGGAGAAAGGAGAGGGAGAGGGAGAGGGAGAGGGAGACGACTTCGA
TGCCGCCGCCGCCGCCGCCGCCGCCACGCCGACCTCGACCTCGACCTCGA
CCTCAGTCCCGAGCTCTGGCTCGATAGACCTAAAGGAGAGGGAGAGGGAG
AGGGAGAGGGAGACGACTTCGATGCCGCCGCCGCCGCCGCCGCCGCCACG
CCGACCTCGACCTCGACCTCGACCTCAGTCCCGAGCTCTGGCTCGATAGA
CCTA
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