mRNA_S-firma_M_contig9127.20076.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9127.20076.1
Unique NamemRNA_S-firma_M_contig9127.20076.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9127.20076.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.740e-21
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    7 VRMGLLTAMVDSPVHSAMTNTKGSNASTKHPCAACNISQEGLKDWQCDFQRNLRTAEGIDADIAYAEAGSTAYERGQRAMHRGVTPPALPNPLKRLTFDRVRQIGVDVLHQDGI 348
            VRMGLLTA +DSP+HS  TN K  NA T+  C AC + ++ L + + D  +N R+A+G+  D+A   +     E+ + +   GV  P  PNPL  +TFDRV   G+DVLHQ  +
Sbjct:  121 VRMGLLTANLDSPMHSLWTNQKHHNAKTERACQACTVPRKDLGNPRYDIVKNARSADGLREDLALVASIEKRQEQLKMSRALGVVVPRYPNPLDEVTFDRVEGCGMDVLHQSAL 234
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BLAST of mRNA_S-firma_M_contig9127.20076.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.080e-20
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:    7 VRMGLLTAMVDSPVHSAMTNTKGSNASTKHPCAACNISQEGLKDWQCDFQRNLRTAEGIDADIAYAEAGSTAYERGQRAMHRGVTPPALPNPLKRLTFDRVRQIGVDVLHQDGIVS 354
            VR+GLLTA +DSP+HS  TN K  NA T+  C AC + +  L + + D  +N RTA+G+  D++   A     +R + +   GV  P  PNP   + FDRV   G+D+LHQ  + S
Sbjct:   27 VRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNPQDEVAFDRVEGCGMDILHQSALNS 142
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BLAST of mRNA_S-firma_M_contig9127.20076.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-14
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:    7 VRMGLLTAMVDSPVHSAMTNTKGSNASTKHPCAACNISQEGLKDWQCDFQRNLRTAEGIDADIAYAEAGSTAYERGQRAMHRGVTPPALPNPLKRLTFDRVRQIGVD 327
            VR+GLLTA +DSP+HS   N K  NA T   C AC + +  L + + D  +N RTA+G+  D+    A     +R + +   GV  P  PNPL  +  DRV   G+D
Sbjct:   24 VRLGLLTANLDSPMHSLWANQKHHNAKTT--CQACVVPRRDLGNPKYDIVKNARTADGLKEDLDRVAATEKKQDRVKLSRALGVVVPRYPNPLHEVAIDRVDGCGMD 128
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9127.20076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZI4_ECTSI1.740e-2142.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI3.080e-2040.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX4_9PHAE4.390e-1439.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9127contigS-firma_M_contig9127:3441..3803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828739.4461288-CDS-S-firma_M_contig9127:3440..37911622828739.4461288-CDS-S-firma_M_contig9127:3440..3791Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9127 3441..3791 -
1697105133.336311-CDS-S-firma_M_contig9127:3440..37911697105133.336311-CDS-S-firma_M_contig9127:3440..3791Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9127 3441..3791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828739.4604542-UTR-S-firma_M_contig9127:3791..38031622828739.4604542-UTR-S-firma_M_contig9127:3791..3803Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9127 3792..3803 -
1697105133.3456712-UTR-S-firma_M_contig9127:3791..38031697105133.3456712-UTR-S-firma_M_contig9127:3791..3803Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9127 3792..3803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9127.20076.1prot_S-firma_M_contig9127.20076.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9127 3441..3791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9127.20076.1

>prot_S-firma_M_contig9127.20076.1 ID=prot_S-firma_M_contig9127.20076.1|Name=mRNA_S-firma_M_contig9127.20076.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=117bp
MGLLTAMVDSPVHSAMTNTKGSNASTKHPCAACNISQEGLKDWQCDFQRN
LRTAEGIDADIAYAEAGSTAYERGQRAMHRGVTPPALPNPLKRLTFDRVR
QIGVDVLHQDGIVSDG*
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mRNA from alignment at S-firma_M_contig9127:3441..3803-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9127.20076.1 ID=mRNA_S-firma_M_contig9127.20076.1|Name=mRNA_S-firma_M_contig9127.20076.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=363bp|location=Sequence derived from alignment at S-firma_M_contig9127:3441..3803- (Sphaerotrichia firma Sfir_13m male)
GTTTTCGTGCGCATGGGTCTGTTGACGGCAATGGTTGACAGTCCGGTCCA
CTCGGCCATGACGAACACCAAGGGGTCTAATGCCTCCACAAAGCATCCTT
GTGCCGCGTGCAACATCAGCCAAGAGGGGCTCAAGGACTGGCAGTGCGAC
TTCCAGCGCAATCTTCGAACTGCTGAAGGCATTGACGCCGACATAGCCTA
CGCCGAAGCCGGGAGCACAGCCTACGAGCGAGGACAACGAGCAATGCACC
GAGGCGTTACGCCTCCCGCTCTGCCAAACCCTCTGAAGCGCTTGACGTTC
GACAGAGTTCGCCAGATTGGAGTAGACGTGTTGCACCAAGACGGCATCGT
AAGTGATGGGTGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9127:3441..3803-

>mRNA_S-firma_M_contig9127.20076.1 ID=mRNA_S-firma_M_contig9127.20076.1|Name=mRNA_S-firma_M_contig9127.20076.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=702bp|location=Sequence derived from alignment at S-firma_M_contig9127:3441..3803- (Sphaerotrichia firma Sfir_13m male)
ATGGGTCTGTTGACGGCAATGGTTGACAGTCCGGTCCACTCGGCCATGAC
GAACACCAAGGGGTCTAATGCCTCCACAAAGCATCCTTGTGCCGCGTGCA
ACATCAGCCAAGAGGGGCTCAAGGACTGGCAGTGCGACTTCCAGCGCAAT
CTTCGAACTGCTGAAGGCATTGACGCCGACATAGCCTACGCCGAAGCCGG
GAGCACAGCCTACGAGCGAGGACAACGAGCAATGCACCGAGGCGTTACGC
CTCCCGCTCTGCCAAACCCTCTGAAGCGCTTGACGTTCGACAGAGTTCGC
CAGATTGGAGTAGACGTGTTGCACCAAGACGGCATCGTAAGTGATGGGTG
AATGGGTCTGTTGACGGCAATGGTTGACAGTCCGGTCCACTCGGCCATGA
CGAACACCAAGGGGTCTAATGCCTCCACAAAGCATCCTTGTGCCGCGTGC
AACATCAGCCAAGAGGGGCTCAAGGACTGGCAGTGCGACTTCCAGCGCAA
TCTTCGAACTGCTGAAGGCATTGACGCCGACATAGCCTACGCCGAAGCCG
GGAGCACAGCCTACGAGCGAGGACAACGAGCAATGCACCGAGGCGTTACG
CCTCCCGCTCTGCCAAACCCTCTGAAGCGCTTGACGTTCGACAGAGTTCG
CCAGATTGGAGTAGACGTGTTGCACCAAGACGGCATCGTAAGTGATGGGT
GA
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